KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:54:17 2014 Check: 00 .. Name: ENSTTRP00000002053/1-802 Len: 1420 Check: 3127 Weight: 1.00 Name: ENSBTAP00000043043/1-810 Len: 1420 Check: 9904 Weight: 1.00 Name: bmy_18138T0/1-482 Len: 1420 Check: 646 Weight: 1.00 Name: BACU007385/1-1411 Len: 1420 Check: 7721 Weight: 1.00 // 1 50 ENSTTRP00000002053/1-802 ---------- ---------- ---------- ---------- ---------M ENSBTAP00000043043/1-810 ---------- ---------- ---------- ---------- ---------M bmy_18138T0/1-482 ---------- ---------- ---------- ---------- ---------- BACU007385/1-1411 MADLGVHRIL LLVISLTKCL EGTKLLADLK KCGDLECETL ISRVLAIRDY 51 100 ENSTTRP00000002053/1-802 EGP------- ---------- ---------- ---------- ---------- ENSBTAP00000043043/1-810 EGP------- ---------- ---------- ---------- ---------- bmy_18138T0/1-482 ---------- ---------- ---------- ---------- ---------- BACU007385/1-1411 RGPDCRYLNF TKGEEISVYV KLAGEREDLW AGSKGKDFGY FPRDAVQIEE 101 150 ENSTTRP00000002053/1-802 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000043043/1-810 ---------- ---------- ---------- ---------- ---------- bmy_18138T0/1-482 ---------- ---------- ---------- ---------- ---------- BACU007385/1-1411 VFISEEVEIS TKESDFLCLL GISYTFENED SELNSDNGEN TYPYEEDKEP 151 200 ENSTTRP00000002053/1-802 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000043043/1-810 ---------- ---------- ---------- ---------- ---------- bmy_18138T0/1-482 ---------- ---------- ---------- ---------- ---------- BACU007385/1-1411 KSRVYESDFQ IDLGFYSTSE STLFEDQFPA SEAPEDIRST SESKDWEAVE 201 250 ENSTTRP00000002053/1-802 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000043043/1-810 ---------- ---------- ---------- ---------- ---------- bmy_18138T0/1-482 ---------- ---------- ---------- ---------- ---------- BACU007385/1-1411 AGNVEQYPIP EGDHVPPSSA IPEVKGWFGF GKDQAGEKTF ESVTEPLEES 251 300 ENSTTRP00000002053/1-802 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000043043/1-810 ---------- ---------- ---------- ---------- ---------- bmy_18138T0/1-482 ---------- ---------- ---------- ---------- ---------- BACU007385/1-1411 SFQSRKIPVE DENDSEGLNN GEPQTEHKQE LESEFDSVPK KESELVSESE 301 350 ENSTTRP00000002053/1-802 ---------- -GTVSQPHLG L--------- ---------- ---------- ENSBTAP00000043043/1-810 ---------- -GSAPQPYLG L--------- ---------- ---------- bmy_18138T0/1-482 ---------- ---------- ---------- ---------- ---------- BACU007385/1-1411 HILNPQDTGW FGGGFTSYFG FGGEDTGLEL LSKESNPPLQ DVPSSISSEE 351 400 ENSTTRP00000002053/1-802 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000043043/1-810 ---------- ---------- ---------- ---------- ---------- bmy_18138T0/1-482 ---------- ---------- ---------- ---------- ---------- BACU007385/1-1411 EPTVPCTEIL TEKEDTITND SSILKPSWFD FGFAMLGFAY ANEDKIISDD 401 450 ENSTTRP00000002053/1-802 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000043043/1-810 ---------- ---------- ---------- ---------- ---------- bmy_18138T0/1-482 ---------- ---------- ---------- ---------- ---------- BACU007385/1-1411 GKNEEEGGGD KHGHPPTSEF DTDKEQEIKI TKIMETENQI GKKMVLEKTD 451 500 ENSTTRP00000002053/1-802 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000043043/1-810 ---------- ---------- ---------- ---------- ---------- bmy_18138T0/1-482 ---------- ---------- ---------- ---------- ---------- BACU007385/1-1411 DSDTLPYFKK FLYTFDNPWN FQNILKETEL PSPKETLDEN NGGENVKREE 501 550 ENSTTRP00000002053/1-802 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000043043/1-810 ---------- ---------- ---------- ---------- ---------- bmy_18138T0/1-482 ---------- ---------- ---------- ---------- ---------- BACU007385/1-1411 FSAEYYPTDN TEDMMLKNGY SQPDMVSKIE LSMRIHEEVH FKTLFSENND 551 600 ENSTTRP00000002053/1-802 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000043043/1-810 ---------- ---------- ---------- ---------- ---------- bmy_18138T0/1-482 ---------- ---------- ---------- ---------- ---------- BACU007385/1-1411 EKSKTSLDTE RPAQVEVDTF VENTLSNSQI FSTDYSLSSQ NYVAQKEDAS 601 650 ENSTTRP00000002053/1-802 ---------- ---------- ---VLGKLRR VVAALPEDMR PGSNFYGFPW ENSBTAP00000043043/1-810 ---------- ---------- ---VLAKLRW AVAALPEDMR Q-SNLYGFPW bmy_18138T0/1-482 ---------- ---------- ---------- ---------- ---------- BACU007385/1-1411 ECQILKYLFQ IDVYDFLTSA YSPIVVLTER VVAALPEDMR PGSNFYGFPW 651 700 ENSTTRP00000002053/1-802 ELVIFATVVG FFAILLFLWR SFRSVRSRLY VGREKKLAAE LSTLIEEKCK ENSBTAP00000043043/1-810 ELVICATIVG FFAVLLFLWR SFQSVRSRLY VGREKKLAIE LSTLIEEKCK bmy_18138T0/1-482 ---------- ---------- ---------- ---------- ---------- BACU007385/1-1411 ELVICATIVG FFAILLFLWR SFRSVRSRLY VGREKKLAAE LSTLIEEKCK 701 750 ENSTTRP00000002053/1-802 LLEKFSVVQK EYEGLESSLK DASFEKESTE AQSLEAV--- ------CEKL ENSBTAP00000043043/1-810 LLEKFSIVQK EYESLESSLK DASYEKESTE AQSLEFVEGS QISEAFYEKL bmy_18138T0/1-482 ---------- ---------- ---------- -----AV--- ------CEKL BACU007385/1-1411 LLEKFSVVQK EYEGLESSLK DASFEKESTE AQHLEAV--- ------CEKL 751 800 ENSTTRP00000002053/1-802 TRSTSELEDE ILILEKELKE EKSKHSEQDE LMVDISKRIQ SLEDESKSLK ENSBTAP00000043043/1-810 TESKSELEDE ILILEKELKE EKSKHSKQDE LMSEISKRIQ SLEDESKSLK bmy_18138T0/1-482 TRSTSELEDE ILILEKELKE EKSKHSEQDE LMVDISKRIQ SLEDESKSLK BACU007385/1-1411 TRSTSELEDE ILILEKELKE EKSKHSEQDE LMVDISKKIQ SLEDESKSLK 801 850 ENSTTRP00000002053/1-802 SQVSEXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX LLQEAEEWRE ENSBTAP00000043043/1-810 SQVAEAKTTF KIFQMNEERL KIAIKDALSE NSQLQESQKQ LLQEAEEWRE bmy_18138T0/1-482 SQVSEAKTTF KIFQMNEERL KVAIKEALSE NSQLQESQKQ LLQEAEEWRE BACU007385/1-1411 SQVSEAKTTF KIFQMNEERL KVAIKEALSE NSQLQESQKQ LLQEAEEWRE 851 900 ENSTTRP00000002053/1-802 KVNELNKQKI TFEDSKVHVE QVLCDKENQM KXXXXXXXXX XXXXXXXXXX ENSBTAP00000043043/1-810 QVNELNKQRM TFEDSKVHVE QVLCDKENQI KSLTERLRKM KDWTAVLGEE bmy_18138T0/1-482 QVNELNKQKI TFEDSKVHVE QVLCDKENQI KSLTERLQKM KDWAAVLGED BACU007385/1-1411 QVNELNKQKV TFEDSKVHVE QVLCDKENQI KSLTERLQKM KDWAAVLGED 901 950 ENSTTRP00000002053/1-802 XXXXXXXXXX XXXXXXXXXX XXNQPKGALK KLIHAAKLRA SLKTLEGERN ENSBTAP00000043043/1-810 IADDDNLEWE MKSDSENDAH LDNQPKGALK KLIHAAKLRA SLKTLEGERN bmy_18138T0/1-482 ITDDDNLELE MKSDSGNGAH LDNQPKGALK KLIHAAKLRA SLKTLEGERN BACU007385/1-1411 ITDDDNLELE MKSDSGNGAH LDNQPKGALK KLIHAAKLRA SLKTLEGERN 951 1000 ENSTTRP00000002053/1-802 QIYTQLSEAD KTKEELTECI KNLQTEQASL QSENTEFESE TQKLQQKLKV ENSBTAP00000043043/1-810 QIYTQLSEVD KTKEELTECI KNLQTEQASL QSENTQFENE TQKLQQKLKV bmy_18138T0/1-482 QIYTQLSEVG KTKEELTECI KNLQTEQASL QSENTQFESD TQKLQQKLKV BACU007385/1-1411 QIYTQLSEVD KTKEELTECI KNLQTEQASL QSENTQFESD TQKLQQKLKV 1001 1050 ENSTTRP00000002053/1-802 MTELYQENEM TLHRKLTAEE NYRLEKEEKL SKADEKISHA AEELETYRKR ENSBTAP00000043043/1-810 MTELYQENEM ILHRKLTMEE NYRLEKEEKL SKADEKINHA AEELETYRKR bmy_18138T0/1-482 ITELYQENEM TLHRKLTAEE NYRLEKEEKL SKADEKISHA AEELETYRKR BACU007385/1-1411 ITELYQENEM TLHRKLTAEE NYRLEKEEKL SKADEKISHA AEELETYRKR 1051 1100 ENSTTRP00000002053/1-802 AKDLEEELER TIHSYQGQII SHEKKAHDNW LAARTTERNL NDLRKENAHN ENSBTAP00000043043/1-810 AKDLEEELER TIHSYQGQII SHEKKAHDNW LAARTAERNL NDLRKENAHN bmy_18138T0/1-482 AKDLEEELER TIHSYQGQII SHEKKAHDNW LAARTAERNL NDLRKENAHN BACU007385/1-1411 AKDLEEELER TIHSYQGQII SHEKKAHDNW LAARTVERNL NDLRKENAHN 1101 1150 ENSTTRP00000002053/1-802 RQKLTETEFK FELLEKDPYA LDVPNTAFGR EHSPYGPSPL GRPSPEMRAF ENSBTAP00000043043/1-810 RQKLTETEFK IELLEKDPYA LDVPNTAFGR EHSPYGPSPL GRPSPEMRAF bmy_18138T0/1-482 RQKLTETEFK FELLEKDPYA LDVPNTAFGR ERSPYGPSPL GRPSPEMRAF BACU007385/1-1411 RQKLTETEFK FELLEKDPYA LDVPNTAFGR ERSPYGPSPL GRPSPEMRAF 1151 1200 ENSTTRP00000002053/1-802 LSPPTLLEGP LRLSPLLPGG GGRGSRGPGN PLDHQITNER GESSSDRLTD ENSBTAP00000043043/1-810 LSPPTLLEGP LRLSPLLPGG GGRGSRGPGN PLDHPITNER GESNSDRLTD bmy_18138T0/1-482 LSPPTLLEGP LRLSPLLPGG GGRGSRGPGN PLDHQITNER GESSSDRLID BACU007385/1-1411 LSPPTLLEGP LRLSPLLPGG GGRGSRGPGN PLDHQITNER GESSSDRLID 1201 1250 ENSTTRP00000002053/1-802 PHRASSDTGS LSPPWEQDRR MMIPPSGQPY PDPVLPPQRQ DRFYSNSGRL ENSBTAP00000043043/1-810 PHRASSDTGS LSPPWEQDRR MMIPPSGQPY PDPVLLPQRQ DRFYSNSGRL bmy_18138T0/1-482 PHRAPSDTGS LSPPWEQDRR MMIPPS---- ---------- ---------- BACU007385/1-1411 PHRAPSDTGS LSPPWEQDRR MMIPPSGQPY PDPVLPPQRQ DRFYSNSGRL 1251 1300 ENSTTRP00000002053/1-802 SGPAELRSFN MPSLDKTDGP VSSEMESSRN DSKDDLGNLN VPDSSHPIEN ENSBTAP00000043043/1-810 SGPAELRSFN MPSLDKTDGP VSSEMESSRN ESKDDLGNLN VPDSSLPIEN bmy_18138T0/1-482 ---------- ---------- ---------- ---------- ---------- BACU007385/1-1411 SGPAELRSFN MPSLEKTDGP ASSEMESGRN DSKDDLGNLN VPDSSHLIEN 1301 1350 ENSTTRP00000002053/1-802 EAPGPGLVPP PHPPIRGPLF PMGTRGPFIR RGPPFPPPPP GSMYGASRDY ENSBTAP00000043043/1-810 EATGPGFVPP PRPPVRVPLF PMDTRGPFIR RGPPFPPPPP GSMYGGPRDY bmy_18138T0/1-482 ---------- ---------- ---------- ---------- ---------- BACU007385/1-1411 EAPGPGLVPP PHPPIRGPLF PMGTRGPFIR RGPPFPPPPP GSMYGASRDY 1351 1400 ENSTTRP00000002053/1-802 FPPRDFPGPA PPLFAMRNVY PPRGFPHYLP PRAGFFPPPP HPESRSDFPS ENSBTAP00000043043/1-810 FPPRDFPGPP PPPFAMRNVY PPRGFPHYLP PRAGFFPPPP HPESRSEFPS bmy_18138T0/1-482 ---------- ---------- ---------- ---------- ---------- BACU007385/1-1411 FPPRDFPGPA PPPFPVRNIC PPRVFPHYLP PRAGFFPPPP HPESRSEFPS 1401 1450 ENSTTRP00000002053/1-802 GLIPPSNEPT TEHPEPQQET ENSBTAP00000043043/1-810 GLVPPSNEPT TEHPEPPQEP bmy_18138T0/1-482 ---------- ---------- BACU007385/1-1411 GLIPPSNEPT TEHPEPQQET