KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:54:18 2014 Check: 00 .. Name: bmy_18719T0/1-612 Len: 771 Check: 4736 Weight: 1.00 Name: ENSP00000305442/1-770 Len: 771 Check: 7378 Weight: 1.00 Name: ENSBTAP00000043047/1-770 Len: 771 Check: 2200 Weight: 1.00 Name: ENSTTRP00000004921/1-712 Len: 771 Check: 2673 Weight: 1.00 Name: BACU018201/1-748 Len: 771 Check: 6151 Weight: 1.00 // 1 50 bmy_18719T0/1-612 MDFSKFLAED FDVKEWINAA FRAGPKEVAA GKADSHAATL VMKLQLFIQE ENSP00000305442/1-770 MDFSKFLADD FDVKEWINAA FRAGSKEAAS GKADGHAATL VMKLQLFIQE ENSBTAP00000043047/1-770 MDFSKFLAED FDVKEWINAA FRAGPKEAAA GKADSHAATL VMKLQLFIQE ENSTTRP00000004921/1-712 ---------- ---------- ---------- ---------- ---------- BACU018201/1-748 MDFSKFLAED FDVKEWINAA FRAGPKEVAA GKADSHAATL VMKLQLFIQE 51 100 bmy_18719T0/1-612 VNHAVE---- VIIEHLLCTC QEMSAGDEKF TFL------- ---------- ENSP00000305442/1-770 VNHAVEETSH QALQNMPKVL RDVEALKQEA SFLKEQMILV KEDIKKFEQD ENSBTAP00000043047/1-770 VNHAVEETSH QALQNMPKVL RDVEALKQEA SFLKEQMILV KEDIKKFEQD ENSTTRP00000004921/1-712 -------TSH QALQNMPKVL RDVEALKQEA SFLKEQMILV KEDIKKFEQD BACU018201/1-748 VNHAVEETSH QALQNMPKVL RDVEALKQEA SFLKEQMILV KEDIKKFEQD 101 150 bmy_18719T0/1-612 ---------- ---------- ---------- ------ELAA LWGTYDIAVI ENSP00000305442/1-770 TSQSMQVLVE IDQVKSRMQL AAESLQEADK WSTLSADIEE TFKTQDIAVI ENSBTAP00000043047/1-770 TSQSMQVLVE IDQVKSRMQL AAESLQEADK WSTLSADIEE TFKTQDIAVI ENSTTRP00000004921/1-712 TSQSMQVLVE IDQVKSRMQL AAESLQEADK WSTLSADIEE TFKTQDIAVI BACU018201/1-748 TSQSMQVLVE IDQVKSRMQL AAESLQEADK WSTLSADIEE TFKTQDIAVI 151 200 bmy_18719T0/1-612 SAKLT----- VLSIVKA--- ---CKGLASL ALVVKSHRSG ALL-ELSPGE ENSP00000305442/1-770 SAKLTGMQNS LMMLVDTPDY SEKCVHLEAL KNRLEALASP QIVAAFTSQA ENSBTAP00000043047/1-770 SAKLTGMQNS LMMLVDTPDY SEKCVHLEAL KNRLEALASP QIVAAFTSQS ENSTTRP00000004921/1-712 SAKLTGMQNS LMMLVDTPDY SEKCVHLEA- KNRLEALASP QIVAAFTSQS BACU018201/1-748 SAKLTGMQNS LMMLVDTPDY SEKCVHLEAL KNRLEALASP QIVAAFTSQS 201 250 bmy_18719T0/1-612 LYQSKVFVKV FTEIDRMPQL LAYYYKCHKV QLLAAWQELC QTDLPLDRQL ENSP00000305442/1-770 VDQSKVFVKV FTEIDRMPQL LAYYYKCHKV QLLAAWQELC QSDLSLDRQL ENSBTAP00000043047/1-770 IDQSKMFVKV FSEIDRMPQL LAYYYKCHKV QLLAAWQELC QTDLPLDRQL ENSTTRP00000004921/1-712 VDQSKVFVKV FTEIDRMPQL LAYYYKCHKX XXXXXXXXXX XXXLPLDRQL BACU018201/1-748 IDQSKVFVKV FTEIDRMPQL LAYYYKCHKV QLLAAWQELC QTDLPLDRQL 251 300 bmy_18719T0/1-612 TGLYDALLGA WHTQIQWAMQ VFRNPHEVVT VLLIQTLGAL VPSLPICLSS ENSP00000305442/1-770 TGLYDALLGA WHTQIQWATQ VFQKPHEVVM VLLIQTLGAL MPSLPSCLSN ENSBTAP00000043047/1-770 TGLYDALLGA WHAQIQWASQ VFKNPHDVVT VLLIQTLGAL VPSLPVCLSS ENSTTRP00000004921/1-712 TGLYDALLGA LHTQIQWAMQ VFRNPYEVVT VLLIQTLGAL VPSLPICLSS BACU018201/1-748 TGLYDALLGA WHTQIQWAMQ VFRNPHEVVT VLLIQTLGAL VPSLPICLSA 301 350 bmy_18719T0/1-612 SVERAGPELE LVKLLEFYDA TAHFAKGLEM ALLPHADEQN LVKVVELVDA ENSP00000305442/1-770 GVERAGPEQE LTRLLEFYDA TAHFAKGLEM ALLPHLHEHN LVKVTELVDA ENSBTAP00000043047/1-770 GVERAGPELE LVKLLEFYDA TAHFAKGLEM ALLPHAYEQN LVKVMELVDA ENSTTRP00000004921/1-712 SVERAGPELE LVKLLDFYDA TAHFAKGLEM ALLPHADEQT LVKVVELVDA BACU018201/1-748 SVERAGPELE LVKLLELYDA TAHFAKGLEM ALLPHADEQN LVKVVELVDA 351 400 bmy_18719T0/1-612 VYGPYRPYQL KYGDMEEKNL LIQISAVPLE RGEVIDCVQE LSHSVNKLFG ENSP00000305442/1-770 VYDPYKPYQL KYGDMEESNL LIQMSAVPLE HGEVIDCVQE LSHSVNKLFG ENSBTAP00000043047/1-770 VYGPYKPYQL KYGDMEEKYL LIQFSEVPLE HGEVIDCVQE LSHSVNKLFG ENSTTRP00000004921/1-712 VYGPYRPYQL KYGDMEEKNL LLQISAVPLE RGEVIDCVQE LSHSVNKLFG BACU018201/1-748 VYGPYRPYQL KYGDMEEKNL LIQISAVPLE RGEVIDCVQE LSHSVNKLFG 401 450 bmy_18719T0/1-612 LASAAIDRCI KFTNGLGTCG LLTALKSLFA KYVSDFTSTL HSIRKKYRLD ENSP00000305442/1-770 LASAAVDRCV RFTNGLGTCG LLSALKSLFA KYVSDFTSTL QSIRKKCKLD ENSBTAP00000043047/1-770 LSSAAVDRCI RFTSGLGTCG LLTALKSLFA KYVSDFTSTL HSIRKKYRLD ENSTTRP00000004921/1-712 LASAAIDRCI TFTNGLGTCG LLTALKSLFA KYVSDFTSTL YSIRKKYRLD BACU018201/1-748 LASAAIDRCV KFTNGLGTCG LLTALKSLFA KYVSDFTSTL HSIRKKYRLD 451 500 bmy_18719T0/1-612 DIPLNSLFQE DWAAFQNSIR IIATCGELLR QCGDFEQQLA NRILSTAGKY ENSP00000305442/1-770 HIPPNSLFQE DWTAFQNSIR IIATCGELLR HCGDFEQQLA NRILSTAGKY ENSBTAP00000043047/1-770 DIPLNSLFQE DWTAFQNSIR IIATCGELLR QCGDFEQQLA NRILSTAGKY ENSTTRP00000004921/1-712 DIPLNSLFQE DWAAFQNSIR IIATCGELLR QCGDLEQQLA NRILSTAGKY BACU018201/1-748 DIPLNSLFQE DWAAFQNSI- ---------- ---------- -RILSTAGKY 501 550 bmy_18719T0/1-612 LSESYSPRSL TGFQDSILTD KKSSARNPWQ EYNYLQKDSP AEYGSLMEIL ENSP00000305442/1-770 LSDSCSPRSL AGFQESILTD KKNSAKNPWQ EYNYLQKDNP AEYASLMEIL ENSBTAP00000043047/1-770 LSDSFSPRSL TGFQDSILTD KKSSAKNPWQ EYNYLQKDSP AEYGSLMEIL ENSTTRP00000004921/1-712 LSESYSPRSL TGFQDSILTD KKSSARNPWQ EYNYLQKDSP AEYGSLMEIL BACU018201/1-748 LSESYSPRSL TGFQDSILTD KKSSARNPWQ EYNYLQKDSP AEYGSLMEIL 551 600 bmy_18719T0/1-612 YTLKEKGSSN HNLLSASRAA LTRLNQQAHQ LAFDSVFLRI KQQLLLISKM ENSP00000305442/1-770 YTLKEKGSSN HNLLAAPRAA LTRLNQQAHQ LAFDSVFLRI KQQLLLISKM ENSBTAP00000043047/1-770 YTLKEKGSSN HHLLSASRSA LTRLNQQAHQ LAFDSVFLRI KQQLLLIPKM ENSTTRP00000004921/1-712 YTLKEKGSGN HNLLSASRAA LTRLNQQAHQ LAFDSVFLRI KQQLLLISKM BACU018201/1-748 YTLKEKGSSN HNLLSASRAA LTRLNQQAHQ LAFDSVFLRI KQQLLLISKM 601 650 bmy_18719T0/1-612 DSWNTAGIGE TLTDDLPTFS LTPLEYISNI GQYIMSLPLN LEPFVTQEDS ENSP00000305442/1-770 DSWNTAGIGE TLTDELPAFS LTPLEYISNI GQYIMSLPLN LEPFVTQEDS ENSBTAP00000043047/1-770 DSWNTAGIGE TLTDDLPTFS LTPLEYISNI GQYIMSLPLN LEPFVTQEDS ENSTTRP00000004921/1-712 DSWNTAGIGE TLTDDLPTFS LTPLEYISNI GQYIMSLPLN LEPFVTQEDS BACU018201/1-748 DSWNTAGIGE TLTDDLPPFS LTPLEYISNI GQYIMSLPLN LEPFVTQEDS 651 700 bmy_18719T0/1-612 ALELALHAGK LPFPPEQGKR DLQERERRA- -WM------- ---------- ENSP00000305442/1-770 ALELALHAGK LPFPPEQGD- ELPELDNMAD NWLGSIARAT MQTYCDAILQ ENSBTAP00000043047/1-770 ALELALHAGK LPFPPEQGD- ELPELDNMAD NWLGSIARAT MQTYCDAILQ ENSTTRP00000004921/1-712 ALELALHAGK LPFPPEQGD- ELPELDNMTD SWLGSIARAT MQTYCDAVLQ BACU018201/1-748 ALELALHAGK LPFPPEQGD- ELPELDNMAD SWLGSVARAT MQTYCDAVLQ 701 750 bmy_18719T0/1-612 ---------- ---------- ---------- ---------- ---------- ENSP00000305442/1-770 IPELSPHSAK QLATDIDYLI NVMDALGLQP SRTLQHIVTL LKTRPEDYRQ ENSBTAP00000043047/1-770 IPELTPHSTK QLATDIDYLI NVMDALGLQP SRTLQNIVML LKAKPEDYRQ ENSTTRP00000004921/1-712 IPELTPHSTK QLATDIDYLI NVMDALGLQP SRTLQNILML LKAKPEDYRQ BACU018201/1-748 IPELTPHSTK QLATDIDYLI NVMDALGLQP SRTLHNIVML LKAKPEDYRQ 751 800 bmy_18719T0/1-612 ---------- ---------- - ENSP00000305442/1-770 VSKGLPRRLA TTVATMRSVN Y ENSBTAP00000043047/1-770 VSKGLPRRLA TTVATMRSVD Y ENSTTRP00000004921/1-712 VSKGLPRRLA TTVAAMRAVD Y BACU018201/1-748 VSKGLPRRLA TTVAAMRDVD Y