KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:54:19 2014 Check: 00 .. Name: ENSTTRP00000002857/1-978 Len: 1003 Check: 6618 Weight: 1.00 Name: ENSP00000366513/1-981 Len: 1003 Check: 3800 Weight: 1.00 Name: ENSBTAP00000043064/1-951 Len: 1003 Check: 5431 Weight: 1.00 Name: bmy_06055T0/1-918 Len: 1003 Check: 6718 Weight: 1.00 Name: BACU002998/1-980 Len: 1003 Check: 344 Weight: 1.00 // 1 50 ENSTTRP00000002857/1-978 ---------M LRRPAPALAP AAWLLLAG-- ---------- LLCGGGVWAA ENSP00000366513/1-981 ---------M LRRPAPALAP AARLLLAG-- ---------- LLCGGGVWAA ENSBTAP00000043064/1-951 ---------- ---------- ---------- ---------- ---------- bmy_06055T0/1-918 ---------M KRK------- ---------- ---------- ---------- BACU002998/1-980 MDRNYIFIFS VNKHKPWLEP TYHGLVTESD STVLLDPPLI ALDKDAPLRF 51 100 ENSTTRP00000002857/1-978 RVNKHKPWLE PTYHGLVTES DSTVLLDPPL IALDKDAPLR FAESFEVTVT ENSP00000366513/1-981 RVNKHKPWLE PTYHGIVTEN DNTVLLDPPL IALDKDAPLR FAESFEVTVT ENSBTAP00000043064/1-951 -VNKHKPWLE PTYHGLVTES DSTVLLDPPL IALDKDAPLR FAESFEVTVT bmy_06055T0/1-918 ---------- ---------- ---ILMTP-- ---------- -EESFEVTVT BACU002998/1-980 AVNKHKPWLE PTYHGLVTES DSTVLLDPPL IALDKDAPLR FAESFEVTVT 101 150 ENSTTRP00000002857/1-978 KEGEICGFKI HGQNVPFDAV VVDKSTGEGI IRSKEKLDCE LQKDYTFTIQ ENSP00000366513/1-981 KEGEICGFKI HGQNVPFDAV VVDKSTGEGV IRSKEKLDCE LQKDYSFTIQ ENSBTAP00000043064/1-951 KEGEICGFKI HGQNVPFDAV VVDKSTGEGV IRSTEKLDCE LQKDYTFTIQ bmy_06055T0/1-918 KEGEICGFKI HGQNVPFDAV VVDKSTGEGI IRSKEKLDCE LQKDYTFTIQ BACU002998/1-980 KEGEICGFKI HGQNVPFDAV VVDKSTGEGI IRSKEKLDCE LQKDYTFTIQ 151 200 ENSTTRP00000002857/1-978 AYDCGKGPDG ANAKKSHKAT VHIQVNDVNE YAPVFKEKSY KATVVEGKQY ENSP00000366513/1-981 AYDCGKGPDG TNVKKSHKAT VHIQVNDVNE YAPVFKEKSY KATVIEGKQY ENSBTAP00000043064/1-951 AYDCGKGPDG ANVKKSHKAT VHIQVNDVNE YAPVFKEKSY KATVVEGKQY bmy_06055T0/1-918 AYDCGKGPDG ANVKKSHKAT VHIQVNDVNE YAPVFKEKSY KATVVEGKQY BACU002998/1-980 AYDCGKGPDG ANVKKSHKAT VHIQVNDVNE YAPVFKEKSY KATVVEGKQY 201 250 ENSTTRP00000002857/1-978 DSILRVEAVD ADCSPQFSQI CSYEIVTPDV PFAVDKD-GY IKNTEKLNSR ENSP00000366513/1-981 DSILRVEAVD ADCSPQFSQI CSYEIITPDV PFTVDKD-GY IKNTEKLNYG ENSBTAP00000043064/1-951 DSILRVEAVD ADCSPQFSQI CSYEIVTPDV PFTVDKDEGY IKNTEKLNYG bmy_06055T0/1-918 DSVLRVEAVD ADCSPQFSQI CSYEIVTPDV PFAVDKD-GY IKNTEKLNYR BACU002998/1-980 DSVLRVEAAD ADCSPQFSQI CSYEIVTPDV PFAVDKD-GY IKNTEKLSYR 251 300 ENSTTRP00000002857/1-978 KEQQYKLTVT AYDCGKKRAT EDALVKISIK PTCTPGWQGW NKRVEYEPGT ENSP00000366513/1-981 KEHQYKLTVT AYDCGKKRAT EDVLVKISIK PTCTPGWQGW NNRIEYEPGT ENSBTAP00000043064/1-951 KEHQYKLTVT AYDCGKKRAA EDVLVKISIK PTCTPGWQGW NNRVEYEPGT bmy_06055T0/1-918 KEQQYKLTVT AYDCGKKRAT EDVLVKISIK PTCTPGWQGW NNRVEYEPGT BACU002998/1-980 KAQQYKLTVT AYDCGKKRAT EDVLVKISIK PTCTPGWQGW NNRVEYEPGT 301 350 ENSTTRP00000002857/1-978 GALALFPNVH LETCGESVAS VQVTVELETS HIGKGCDRDT YSEKSLHRLC ENSP00000366513/1-981 GALAVFPNIH LETCDEPVAS VQATVELETS HIGKGCDRDT YSEKSLHRLC ENSBTAP00000043064/1-951 GALTLFPNVH LETCDESVAS AQVVVELETS HIGKGCDRDT YSEKSLHRLC bmy_06055T0/1-918 GALALFPNVH LETCDESVAS VQVTVELETS HIGKGCDRDT YSEKSLHRLC BACU002998/1-980 GALALFPNVH LETCDESVAS VRVTVELETS HIGKGCDRDT YSEKSLHRLC 351 400 ENSTTRP00000002857/1-978 GAASGTAELL PSPGGSLNWT IGLPTDNGHD SDQVFEFNGT QGVRVPDGVV ENSP00000366513/1-981 GAAAGTAELL PSPSGSLNWT MGLPTDNGHD SDQVFEFNGT QAVRIPDGVV ENSBTAP00000043064/1-951 GAASGTAELL PSPGGSWNWT IGLPTDNGHD SDQVFEFNGT QAVRVPDGIV bmy_06055T0/1-918 GAASGTAELL PSPGGSLNWT IGLPTDNGHD SDQVFEFNGT QGVRVPDGVV BACU002998/1-980 GAASGTAELL PSPGGSLNWT IGLPTDNGHD SDQVFEFNGT QGVRVPDGVV 401 450 ENSTTRP00000002857/1-978 SVNPKEPFTI SVWMRHGPFG RKKETVLCSS DKTDMNRHHY SLYVHGCRLI ENSP00000366513/1-981 SVSPKEPFTI SVWMRHGPFG RKKETILCSS DKTDMNRHHY SLYVHGCRLI ENSBTAP00000043064/1-951 SVNPKEPFTI SVWMRHGPFG KKKETILCSS DKTEMNRHHY SLYVHGCRLV bmy_06055T0/1-918 SVNPKEPFTI SVWMRHGPFG RKKETVLCSS DKTDMNRHHY SLYVHGCRLI BACU002998/1-980 SVNPKEPFTI SVWMRHGPFG RKKETVLCSS DKTDMNRHHY SLYVHGCRLI 451 500 ENSTTRP00000002857/1-978 FLLRQDPSEE KKYKPAEFHW KLNQVCDEEW HHYVLNVEIP NVTLYVDGVS ENSP00000366513/1-981 FLFRQDPSEE KKYRPAEFHW KLNQVCDEEW HHYVLNVEFP SVTLYVDGTS ENSBTAP00000043064/1-951 FLLRQDPSEE KKYKPAEFHW KLSQVCDEEW HHYVLNVEIP SVTLYVDGVP bmy_06055T0/1-918 FLLRQDPSEE KKYKPAEFHW KLNQVCDEEW HHYVLNVEIP NVTLYVDGVS BACU002998/1-980 FLLRQDPSEE KKYKPAEFHW KLNQVCDEEW HHYVLNVEIP NVTLYVDGVS 501 550 ENSTTRP00000002857/1-978 HKPFSVTEDY PLHASKIETQ LMVGACWQEY SGVENDNETE PVPVASAGGD ENSP00000366513/1-981 HEPFSVTEDY PLHPSKIETQ LVVGACWQEF SGVENDNETE PVTVASAGGD ENSBTAP00000043064/1-951 HEPFSVTEDY PLHPSKIETQ LVVGACWQEY SGVESDNETE PVPLASAGGD bmy_06055T0/1-918 HEPFSVTEDY PLHASKIETQ LMVGACWQEY SGVENDNETE PVPVASAGGD BACU002998/1-980 HEPFSVTEDY PLHASKIETQ LMVGACWQ-- ---------- -------GGD 551 600 ENSTTRP00000002857/1-978 LHMTQFFRGN LAGLTIRSGK LTDKKVIDCL YTCKEGLDLH IPEGSGSGVK ENSP00000366513/1-981 LHMTQFFRGN LAGLTLRSGK LADKKVIDCL YTCKEGLDLQ VLEDSGRGVQ ENSBTAP00000043064/1-951 LRMTQFFRGN LAGLTIRSGK LTDKKVIDCL YTCKEGLDLH TPEDNGRGVK bmy_06055T0/1-918 LHMTQFFRGN LAGLTIRSGK LADKKVIDCL YTCKEGLDLH VPEDSGSGVK BACU002998/1-980 LHMTQFFRGN LAGLTIRSGK LADKKVIDCL YTCKEGLDLH VPEDSGSGVK 601 650 ENSTTRP00000002857/1-978 I-ANPSQSVL TLEGEDVAEL DKAMQHISYL NSRQFPTPGI RRLKITSVVK ENSP00000366513/1-981 IQAHPSQLVL TLEGEDLGEL DKAMQHISYL NSRQFPTPGI RRLKITSTIK ENSBTAP00000043064/1-951 IQANPSQSTL TLEGEDVGEL DKAMQHVSYL NSRQFPTPGI RRLKITSTVK bmy_06055T0/1-918 IQANPSQSVL TLEGEDVGEL DKAMQHISYL NSRQFPTPGI RRLKITSVVK BACU002998/1-980 IQASPSQSVL TLEGEDVGEL DKAMQHISYL NSRQFPTPGI RRLKITSMVK 651 700 ENSTTRP00000002857/1-978 CFNEAVCLSV PALDGYVMVL QPEEPKISLS GIHHFARAAS EFESAEGVFL ENSP00000366513/1-981 CFNEATCISV PPVDGYVMVL QPEEPKISLS GVHHFARAAS EFESSEGVFL ENSBTAP00000043064/1-951 CFNEATCISI PPVDGYIMVL QPEEPKISLS GIHHFARAAS EFESSEGVFL bmy_06055T0/1-918 CFNEATCLSV PPLDGYVMVL QPEEPKISLS GIHHFARAAS EFESSEGVFL BACU002998/1-980 CFNEATCLSV PPLDGYVMVL QPEEPKISLS GIHHFARAAS EFESSEGVFL 701 750 ENSTTRP00000002857/1-978 FPELRIISTI TREVEPEGEG DEDPTXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000366513/1-981 FPELRIISTI TREVEPEGDG AEDPTVQESL VSEEIVHDLD TCEVTVEGEE ENSBTAP00000043064/1-951 FPELRIISTI TREVEPEGEG DEDPTVQESL VSEEIVHDLD TCEVTVEGEE bmy_06055T0/1-918 FPELRIISTI TREVEPEGEG DEDPTVQESL VSEEIVHDLD TCEVTVEGEE BACU002998/1-980 FPELRIISTI TREVEPEGEG DEDPTVQESL VSEEIVHDLD TCEVTVEGEE 751 800 ENSTTRP00000002857/1-978 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXY EEVLH-LRYR ENSP00000366513/1-981 LNHEQESLEV DMARLQQKGI EVSSSELGMT FTGVDTMASY EEVLHLLRYR ENSBTAP00000043064/1-951 LNGEQESLEV DAARLQQKGI EMSSSDMGVV FTGVDTMASY EEILHLLRYR bmy_06055T0/1-918 LNREQESLEV DAGRLQQKGI EVSSSDLGVV FTGVDTMASY EEVLHLLRYR BACU002998/1-980 LNREQESLEV DAARLQQKGI EVSSSDLGVV FTGVDTMASY EEVLHLLHYR 801 850 ENSTTRP00000002857/1-978 NWH-RSLLDR KFKLVCSELN GRYVSNEFQV EVNVIHTANP VEHASHMAAQ ENSP00000366513/1-981 NWHARSLLDR KFKLICSELN GRYISNEFKV EVNVIHTANP MEHANHMAAQ ENSBTAP00000043064/1-951 NWHTRSLLDR KFKLVCSELN GRYVSKEFQV EVNVIHTANP MEHASHIAAQ bmy_06055T0/1-918 NWHTRSLLDR KFKLVCSELN GRYVSNEFQV EVNVIHTANP VEHASHMAAQ BACU002998/1-980 NWHARSLLDR KFKLVCSELN GRYVSNEFQV EVNVIHTANP VEHASHMAAQ 851 900 ENSTTRP00000002857/1-978 PQFVHPEHRS FIDLSGHNLA NPHPFAVVPS TATVVIVVCV SFLVFMIILG ENSP00000366513/1-981 PQFVHPEHRS FVDLSGHNLA NPHPFAVVPS TATVVIVVCV SFLVFMIILG ENSBTAP00000043064/1-951 PQFVHPEHRS FIDLSGHNLA NPHPFAVVPS TATVVIVVCV SFLVFMIILG bmy_06055T0/1-918 PQFVHPEHRS FIDLSGHNLA NPHPFAVVPS TATVVIVVCV SFLVFMIILG BACU002998/1-980 PQFVHPEHRS FIDLSGHNLA NPHPFAVVPS TATVVIVVCV SFLVFMIVLG 901 950 ENSTTRP00000002857/1-978 VFRIRAAHQR TMRDQDSGKE NEMDWDDSAL TITVNPMETY EDQHSSEEEE ENSP00000366513/1-981 VFRIRAAHRR TMRDQDTGKE NEMDWDDSAL TITVNPMETY EDQHSSEEEE ENSBTAP00000043064/1-951 VFRIRAAHQR TMRDQDTGKE NEMDWDDSAL TITVNPMETY EDQHSS-EEE bmy_06055T0/1-918 VFRIRAAHQR TMRDQDSGKE NEMDWDDSAL TITVNPMETY EDQHSS--EE BACU002998/1-980 VFRIRAAHQS TMRDQDGGKE NEMDWDDSAL TITVNPMETY EDQHSS---E 951 1000 ENSTTRP00000002857/1-978 EEEEEEESDA GDEEDDITSA ESESSEEEGV EPGDRQTASR QQQLEWDDST ENSP00000366513/1-981 EEEEEEESED GEEEDDITSA ESESSEEEEG EQGDPQNATR QQQLEWDDST ENSBTAP00000043064/1-951 EEEEEEESED GDEEDDITSA ESESSEEDEG EHGDPQTSNR QQQLEWDDST bmy_06055T0/1-918 EEEEEEESED GDEEDDITSA ESESSEEEEG EHGDQQAANR QQQLEWDDST BACU002998/1-980 EEEEEEESED GDEEDDITSA ESESSEEEEG EHGDQQTANR QQQLEWDDST 1001 1050 ENSTTRP00000002857/1-978 LSY ENSP00000366513/1-981 LSY ENSBTAP00000043064/1-951 LSY bmy_06055T0/1-918 LSY BACU002998/1-980 LSY