KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:54:23 2014 Check: 00 .. Name: ENSTTRP00000001350/1-1356 Len: 1471 Check: 6040 Weight: 1.00 Name: ENSBTAP00000043096/1-1470 Len: 1471 Check: 9440 Weight: 1.00 Name: bmy_17357T0/1-1399 Len: 1471 Check: 3614 Weight: 1.00 Name: ENSP00000386520/1-1467 Len: 1471 Check: 7912 Weight: 1.00 // 1 50 ENSTTRP00000001350/1-1356 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000043096/1-1470 MSDESASGSD PDLDPDVELE DAEEEEEEEE EVAVEEHGRD DGEDLLDDPS bmy_17357T0/1-1399 ---------- ---------- ---------- ---------- ---------- ENSP00000386520/1-1467 MSDESASGSD PDLDPDVELE DA-EEEEEEE EVAVEECDRD DEEDLLDDPS 51 100 ENSTTRP00000001350/1-1356 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000043096/1-1470 LEDMCGTECA QLGEDGQQPP RCTSTTSSQS EPSEQLRRHQ GKGLASEDPK bmy_17357T0/1-1399 ---MCGTECA QLGEDGQRPP RCTSTTSSQS EPSEQLRRHQ GKSLASEDPK ENSP00000386520/1-1467 LEGMCGTEHA QLGEDGQQPP RCTSTTSSQS EPSEQLRRHQ GKNLASEDPK 101 150 ENSTTRP00000001350/1-1356 ---------M RRNIRKLLRE DQLEPVTKAA QQEELERRKR LEQQRKDYAA ENSBTAP00000043096/1-1470 KKRAQKPSHM RRNIRKLLRE DQLEPVTKAA QQEELERRKR LEQQRKDYAA bmy_17357T0/1-1399 KKRAQKPSHM RRNIRKLLRE DQLEPVTKAA QQEELERRKR LEQQRKDYAA ENSP00000386520/1-1467 KKRAQKPSHM RRNIRKLLRE DQLEPVTKAA QQEELERRKR LEQQRKDYAA 151 200 ENSTTRP00000001350/1-1356 PIPTVPLEFL PEEIVLRASD GPQLPPRVLT QEVICLDSSS GSEDEKSSRD ENSBTAP00000043096/1-1470 PIPTVPLELF PEEIVLRASD GPQLPPRVLT QEVICLDSSS GSEDEKSSRD bmy_17357T0/1-1399 PIPTVPLEFL PEEIVLRASD GPQLPPRVLT QEVICLDSSS GSEDEKSSRD ENSP00000386520/1-1467 PIPTVPLEFL PEEIALRASD GPQLPPRVLA QEVICLDSSS GSEDEKSSRD 201 250 ENSTTRP00000001350/1-1356 EVIELSSGEE DTLHIVDSSE SVSEEDEEEE KGGTHVNDVL NQRDALGRVL ENSBTAP00000043096/1-1470 EVIELSSGEE DTLHIVDSSE SVSEEDEEEE KGGTHVNDVL NQRDALGRVL bmy_17357T0/1-1399 EVIELSSGEE DTLHIVDSSE SVSEEDEEEE KGGTHVNDVL NQRDALGRVL ENSP00000386520/1-1467 EVIELSSGEE DTLHIVDSSE SVSEDDEEEE KGGTHVNDVL NQRDALGRVL 251 300 ENSTTRP00000001350/1-1356 VNLNHPPEEE NVFLAPQLAR AVKPHQIGGI RFLYDNLXXX XXXXXXXXXX ENSBTAP00000043096/1-1470 VNLNHPPEEE NVFLAPQLAR AVKPHQIGGI RFLYDNLVES LERFKTSSGF bmy_17357T0/1-1399 VNLNHPPEEE NVFLAPQLAR AVKPHQIGGI RFLYDNLVES LERFKTSSGF ENSP00000386520/1-1467 VNLNHPPEEE NVFLAPQLAR AVKPHQIGGI RFLYDNLVES LERFKTSSGF 301 350 ENSTTRP00000001350/1-1356 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXVNT LQNWLAEFNM ENSBTAP00000043096/1-1470 GCILAHSMGL GKTLQVISFI DVLFRHTPAK TVLAIVPVNT LQNWLAEFNM bmy_17357T0/1-1399 GCILAHSMGL GKTLQVISFI DVLFRHTPAK TVLAIVPVNT LQNWLAEFNM ENSP00000386520/1-1467 GCILAHSMGL GKTLQVISFI DVLFRHTPAK TVLAIVPVNT LQNWLAEFNM 351 400 ENSTTRP00000001350/1-1356 WFPAPEALPA DNKPEEVQPR FFKVHILNDE HKTMAARA-- KVMADWVSEG ENSBTAP00000043096/1-1470 WLPAPEALPA DSKPEEVQPR FFKVHILNDE HKTVSPHVVN EIEPEFSCSG bmy_17357T0/1-1399 WLPAPEALPA DNKPEEVQPR FFKVHILNDE HKTMAARA-- KVMADWVSEG ENSP00000386520/1-1467 WLPPPEALPA DNKPEEVQPR FFKVHILNDE HKTMASRA-- KVMADWVSEG 401 450 ENSTTRP00000001350/1-1356 GVLLMGYEMY RLLTLKKSFA TGR-PKKTKK RSHPVIIDLD EEDRQQEFRR ENSBTAP00000043096/1-1470 GEFIQ-FKME KLLIFSRDFL VHNFPFGTYS KNNIFILSLK GKENQERKEG bmy_17357T0/1-1399 GVLLMGYEMY RLLTLKKSFA AGR-PKKTKK RSHPVIIDLD EEDRQQEFRR ENSP00000386520/1-1467 GVLLMGYEMY RLLTLKKSFA TGR-PKKTKK RSHPVIIDLD EEDRQQEFRR 451 500 ENSTTRP00000001350/1-1356 EFERALCRPG -DVVICDEGH RIKNC-ASTS QALKNIRSRR RVVLTGYPLQ ENSBTAP00000043096/1-1470 KFEKALCRPG PDVVICDEGH RIKNCQASTS QALKNIRSRR RVVLTGYPLQ bmy_17357T0/1-1399 EFEKALCRPG PDVVICDEGH RIKNCQASTS QALKNIRSRR RVVLTGYPLQ ENSP00000386520/1-1467 EFEKALCRPG PDVVICDEGH RIKNCQASTS QALKNIRSRR RVVLTGYPLQ 501 550 ENSTTRP00000001350/1-1356 NNLIEYWCMV DFVRPDFLGT RQEFSNMFER PILNGQCIDS TPQDVRLMRY ENSBTAP00000043096/1-1470 NNLIEYWCMV DFVRPDFLGT RQEFSNMFER PILNGQCIDS TPQDVRLMRY bmy_17357T0/1-1399 NNLIEYWCMV DFVRPDFLGT RQEFSNMFER PILNGQCIDS TPQDVRLMRY ENSP00000386520/1-1467 NNLIEYWCMV DFVRPDFLGT RQEFSNMFER PILNGQCIDS TPQDVRLMRY 551 600 ENSTTRP00000001350/1-1356 RSHVLHSLLE GFVQRRGHTV LKIHLPAKEE NVILVRLSKI QRDLYTQFMD ENSBTAP00000043096/1-1470 RSHVLHSLLE LFLSRRGHTV LKIHLPAKEE NVILVRLSQI QRDLYTQFMD bmy_17357T0/1-1399 RSHVLHSLLE GFVQRRGHTV LKIHLPAKEE NVILVRLSKI QRDLYTQFMD ENSP00000386520/1-1467 RSHVLHSLLE GFVQRRGHTV LKIHLPAKEE NVILVRLSKI QRDLYTQFMD 601 650 ENSTTRP00000001350/1-1356 RFRDCGSSGW LGLNPLKAFC VCCKXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000043096/1-1470 RFRDCGNSGW LGLNPLKAFC VCCKIWNHPD VLYEALQKEN LANEQDLDVE bmy_17357T0/1-1399 RFRDCGSSGW LGLNPLKAFC VCCKIWNHPD VLYEALQKEN LANEQDLDVE ENSP00000386520/1-1467 RFRDCGSSGW LGLNPLKAFC VCCKIWNHPD VLYEALQKES LANEQDLDVE 651 700 ENSTTRP00000001350/1-1356 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000043096/1-1470 ELGSAGTSAR CPSQGTKGKV EDSALASSMG EATNSKFLQG VGFNPFQERG bmy_17357T0/1-1399 ELGSAGTSAR CPSQGTKGKG EDSA---SMG EATNSKFLQG VGFNPFQERG ENSP00000386520/1-1467 ELGSAGTSAR CPPQGTKGKG EDSTLASSMG EATNSKFLQG VGFNPFQERG 701 750 ENSTTRP00000001350/1-1356 XXXXXXXXAK DLLTNYQTGV LENSPKMVLL FHLIEESVKL GDKILVFSQS ENSBTAP00000043096/1-1470 NNIVTYEWAK DLLTNYQTGV LENSPKMVLL FHLIEESVKL GDKILVFSQS bmy_17357T0/1-1399 NNIVTYEWAK DLLTNYQTGV LENSPKMVLL FHLIEESVKL GDKILVFSQS ENSP00000386520/1-1467 NNIVTYEWAK DLLTNYQTGV LENSPKMVLL FHLIEESVKL GDKILVFSQS 751 800 ENSTTRP00000001350/1-1356 LSTLALIEEF LGKREAPCLP GAEGQGVQKW VRNVSYFXXX XXXXXXXXXX ENSBTAP00000043096/1-1470 LSTLALIEEF LGKREVPCLP GAEGQGVQKW IRNVSYFRLD GSTPAFERER bmy_17357T0/1-1399 LSTLALIEEF LGKREAPCLP GAEGQGVQKW VRNVSYFRLD GSTPAFERER ENSP00000386520/1-1467 LSTLALIEEF LGKREVPCPP GTEGQGAQKW VRNISYFRLD GSTPAFERER 801 850 ENSTTRP00000001350/1-1356 XXXXXXXXXX XXXXXXXXXX XAGCLGVNLI GANRVVVFDA SWNPCHDAQA ENSBTAP00000043096/1-1470 LINQFNDPSN LTTWLFLLST RAGCLGVNLI GANRVVVFDA SWNPCHDAQA bmy_17357T0/1-1399 LINQFNDPSN LTTWLFLLST RAGCLGVNLI GANRVVVFDA SWNPCHDAQA ENSP00000386520/1-1467 LINQFNDPSN LTTWLFLLST RAGCLGVNLI GANRVVVFDA SWNPCHDAQA 851 900 ENSTTRP00000001350/1-1356 VCRVYRYGQK KPCHIYRLVA DFTLEKKIYD RQISKQGMSD RVVDDLNPML ENSBTAP00000043096/1-1470 VCRVYRYGQK KPCHIYRLVA DFTLEKKIYD RQISKQGMSD RVVDDLNPML bmy_17357T0/1-1399 VCRVYRYGQK KPCHIYRLVA DFTLEKKIYD RQISKQGMSD RVVDDLNPML ENSP00000386520/1-1467 VCRVYRYGQK KPCYIYRLVA DYTLEKKIYD RQISKQGMSD RVVDDLNPML 901 950 ENSTTRP00000001350/1-1356 N-TRKEVENL LHFVEKEPAP QASLNVKGIK EPVLQLACLK YPHLITKEPF ENSBTAP00000043096/1-1470 NFTRKEVENL LHFVEKEPAP QTSLNVKGIK EPVLQLACLK YPHLITKEPF bmy_17357T0/1-1399 NFTRKEVENL LHFVEKEPAP QASLNIKGIK EPVLQLACLK YPHLITKEPF ENSP00000386520/1-1467 NFTRKEVENL LHFVEKEPAP QVSLNVKGIK ESVLQLACLK YPHLITKEPF 951 1000 ENSTTRP00000001350/1-1356 EHESLLLNRK DHKLTKAEKK AAKKSYEEDK RTSVPYTRPS YAQYYPASDQ ENSBTAP00000043096/1-1470 EHESLLLNRK DHKLTKAEKK AAKKSYEEDK RTSVPYTRPS YAQYYPASDQ bmy_17357T0/1-1399 EHESLLLNRK DHKLTKAEKK AAKKSYEEDK RTSVPYTRPS YAQYYPASDQ ENSP00000386520/1-1467 EHESLLLNRK DHKLTKAEKK AAKKSYEEDK RTSVPYTRPS YAQYYPASDQ 1001 1050 ENSTTRP00000001350/1-1356 SLTSIPAFSQ RNWQPTLKSD EKPVASVRPV QSTPIPMMPR HVPLGGSVSS ENSBTAP00000043096/1-1470 SLTSIPAFSQ RNWQPTLKSD EKPVASVRPV QSTPIPMMPR HVPLGGSVSS bmy_17357T0/1-1399 SLTSIPAFSQ RNWQPTLKSD EKPVASVRPV QSTPIPMMPR HVPLGGSVSS ENSP00000386520/1-1467 SLTSIPAFSQ RNWQPTLKGD EKPVASVRPV QSTPIPMMPR HVPLGGSVSS 1051 1100 ENSTTRP00000001350/1-1356 ASSTNPAMNF PINYLQRAGV LVQKVVTTTD IVIPGLNSST DVQARINAGE ENSBTAP00000043096/1-1470 ASSTNPAMNF PINYLQRAGV LVQKVVTTTD IVIPGLNSST DVQARINAGE bmy_17357T0/1-1399 ASSTNPAMNF PINYLQH--- ---------- IVIPGLNSST DVQARINAGE ENSP00000386520/1-1467 ASSTNPSMNF PINYLQRAGV LVQKVVTTTD IVIPGLNSST DVQARINAGE 1101 1150 ENSTTRP00000001350/1-1356 SIHIIRGTKG TYIRTSDGRI FAVRATGKPK APEDGQMAAS GSQGPSLEST ENSBTAP00000043096/1-1470 SIHIIRGTKG TYIRTSDGRI FAVRATGKPK APEDGRMAAS GSQGPSLEST bmy_17357T0/1-1399 SIHIIRGTKG TYIRTSDGRI FAVRATGKPK APEDGQMAAS GSQGPSLEST ENSP00000386520/1-1467 SIHIIRGTKG TYIRTSDGRI FAVRATGKPK VPEDGRMAAS GSQGPSCEST 1151 1200 ENSTTRP00000001350/1-1356 SNGRHSASSP KAPDPEGLAR PVSPDSPEII SELQQYADVA AARESRQSSP ENSBTAP00000043096/1-1470 SNGRHSASSP KAPDPEGLAR PVSPDSPEII SELQQYADVA AARESRQSSP bmy_17357T0/1-1399 SNGRHSASSP KAPDPEGLAR PVSPDSPEII SELQQYADVA AARESRQSSP ENSP00000386520/1-1467 SNGRHSASSP KAPDPEGLAR PVSPDSPEII SELQQYADVA AARESRQSSP 1201 1250 ENSTTRP00000001350/1-1356 SSNAALPGPP AQLVDSSAVP GTALGTEPRH GGHCLNSSLL VTGQPCGDRH ENSBTAP00000043096/1-1470 SSSTALPGPP APLVDSSAVP GTALGTEPRH GGHCLNSSLL VTGQPCGDRH bmy_17357T0/1-1399 SSNAALPGPP AQLVDSSAVP GTALGTEPRH GGHCLNSSLL VTGQPCGDRH ENSP00000386520/1-1467 STNAALPGPP AQLMDSSAVP GTALGTEPRL GGHCLNSSLL VTGQPCGDRH 1251 1300 ENSTTRP00000001350/1-1356 PVLDLRGHKR KLATPPAAQE SARRRSRKGH LPAPVQPYEH GYPVSGGFAM ENSBTAP00000043096/1-1470 PVLDLRGHKR KLATPPAAQE SARRRSRKGH LPAPVQPYEH GYPVSGGFAM bmy_17357T0/1-1399 PVLDLRGHKR KLATPPAAQE SARRRSRKGH LPAPVQPYEH GYPVSGGFAM ENSP00000386520/1-1467 PVLDLRGHKR KLATPPAAQE SSRRRSRKGH LPAPVQPYEH GYPVSGGFAM 1301 1350 ENSTTRP00000001350/1-1356 PPVSLNHNLT PPFTSQAGEN SLFMGSTPSY YQLSNLLADA RLVFPVTTDP ENSBTAP00000043096/1-1470 PPVSLNHNLT PPFTSQAGEN SLFMGSTPSY YQLSNLLADA RLVFPVTTDP bmy_17357T0/1-1399 PPVSLNHNLT PPFTSQAGEN SLFMGSTPSY YQLSNLLADA RLVFPVTTDP ENSP00000386520/1-1467 PPVSLNHNLT TPFTSQAGEN SLFMGSTPSY YQLSNLLADA RLVFPVTTDP 1351 1400 ENSTTRP00000001350/1-1356 LVPAGPVSSS STATSVTASN PSFMLNPSVP GILPSYSLPF SQPLLSEPRM ENSBTAP00000043096/1-1470 LVPAGPVSSS STATSVTASN PSFMLNPSVT GILPSYSLPF SQPLLSEPRM bmy_17357T0/1-1399 LVPAGPVSSS STATSVTASN PSFMLNPSVP GILPSYSLPF SQPLLSEPRM ENSP00000386520/1-1467 LVPAGPVSSS STATSVTASN PSFMLNPSVP GILPSYSLPF SQPLLSEPRM 1401 1450 ENSTTRP00000001350/1-1356 FAPFPSPVLP GNLSRGMSVY PGYISPHAGY PAGGLLRSQV PPFDSHEVAE ENSBTAP00000043096/1-1470 FAPFPSPVLP SNLSRGMSVY PSYISPHTGY PAGGLLRSQV PPFDSHEVAE bmy_17357T0/1-1399 FAPFPSPVLP SNLSRGMSVY PGYISPHAGY PAGGLLRSQV PPFDSHEVAE ENSP00000386520/1-1467 FAPFPSPVLP SNLSRGMSIY PGYMSPHAGY PAGGLLRSQV PPFDSHEVAE 1451 1500 ENSTTRP00000001350/1-1356 VGFSSNDDED KDDDVIEVTG K ENSBTAP00000043096/1-1470 VGFSSNDDED KDDDVIEVTG K bmy_17357T0/1-1399 VGFSSNDDED KDDDVIEVTG K ENSP00000386520/1-1467 VGFSSNDDED KDDDVIEVTG K