KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:54:25 2014 Check: 00 .. Name: ENSTTRP00000001656/1-221 Len: 245 Check: 3336 Weight: 1.00 Name: ENSP00000319486/1-245 Len: 245 Check: 8484 Weight: 1.00 Name: ENSBTAP00000043153/1-245 Len: 245 Check: 9578 Weight: 1.00 Name: bmy_16833T0/1-156 Len: 245 Check: 1895 Weight: 1.00 Name: BACU002479/1-153 Len: 245 Check: 4858 Weight: 1.00 // 1 50 ENSTTRP00000001656/1-221 ---AHTPYYS LKKLLSFFNG VMAXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000319486/1-245 MAEIHTPYSS LKKLLSLLNG FVAVSGIILV GLGIGGKCGG ASLTNVLGLS ENSBTAP00000043153/1-245 MAERHIPYYS LKKLFSFFNG VTVLSGMILI GLSIYVNFRG AVLTKVLGRS bmy_16833T0/1-156 ---------- -------MFS VLKLSGVILN GLGIYVSFRG AVL-MVLGLS BACU002479/1-153 ---------- ---------- ---------- ---------- ----MVLGLS 51 100 ENSTTRP00000001656/1-221 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXC FSVMVIILIV ENSP00000319486/1-245 SAYLLHVGNL CLVMGCITVL LGCAGWYGAT KESRGTLLFC ILSMVIVLIM ENSBTAP00000043153/1-245 SAYLFHVGYL CLVMGSVTVL LGFARWHGAA KESRGTLLFC FLVMVIILIV bmy_16833T0/1-156 SAYLFHVGYL CLVMGCITVL LGFAGWHRAT KESRGTLLFC FSVMVIILIV BACU002479/1-153 SAYLFHVGYL CLVMGCITVL LGFAGWHRAT KESRSTLLFC FSVMVIILIV 101 150 ENSTTRP00000001656/1-221 EITVATVVLA FFPIVREVAL EHNFVTL--N YRGYN-PDDY SLEWNLVMEK ENSP00000319486/1-245 EVTAATVVLL FFPIVGDVAL EHTFVTLRKN YRGYNEPDDY STQWNLVMEK ENSBTAP00000043153/1-245 QITAATVVLA FFPVVREVAL EHNFVTLRKN YRGYKEPDDY SMRWNLVMEK bmy_16833T0/1-156 EIIVATVVLA FFPIG---VF KCLFSSL--- ---------- ---------Q BACU002479/1-153 EITVATVVLA FFP------- ---------- ---------- ---------T 151 200 ENSTTRP00000001656/1-221 LKGCGMKDYT DF--PSFERM TGHTYPRGCY KSIGTVACDG HNVSAGVIHQ ENSP00000319486/1-245 LKCCGVNNYT DFSGSSFEMT TGHTYPRSCC KSIGSVSCDG RDVSPNVIHQ ENSBTAP00000043153/1-245 LKCCGVKNYT DFSGSSFERV TGHTYPRCCC KSPGTVDCDG HNVSADVIHQ bmy_16833T0/1-156 LKCCGMKNYT DF--PSFERM TGHTYPRGCY KSIGTVACDG HNVFADVIHQ BACU002479/1-153 LKCCGMKNYT DF--PSFERM TGHTYPRGCY KSIRTVACKG HNVSADVTDQ 201 250 ENSTTRP00000001656/1-221 EGCFPKLLKI TKTQSINLSG GSLGEAVIQ- ---------- ----- ENSP00000319486/1-245 KGCFHKLLKI TKTQSFTLSG SSLGAAVIQR WGSRYVAQAG LELLA ENSBTAP00000043153/1-245 EGCFPKLLKI TKTQSANLSG GCLGTAVMQV SSSSSGTHRG LWLLN bmy_16833T0/1-156 E--------- ---------- ---------- ---------- ----- BACU002479/1-153 EGCFPKLLKI TKTQSINLSG GSLGAAVIQA EDLRA----- -----