KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:54:25 2014 Check: 00 .. Name: ENSP00000381740/1-540 Len: 597 Check: 8592 Weight: 1.00 Name: ENSBTAP00000043156/1-504 Len: 597 Check: 9645 Weight: 1.00 Name: bmy_11542T0/1-438 Len: 597 Check: 8172 Weight: 1.00 Name: ENSTTRP00000016568/1-534 Len: 597 Check: 4151 Weight: 1.00 // 1 50 ENSP00000381740/1-540 MSLLFLAMAP KPKPWVQTEG PEKKKGRQAG REEDPFRSTA EALKAIPAEK ENSBTAP00000043156/1-504 ---------- ---------- ---------- ---DSFRSTA EALKAAPTEK bmy_11542T0/1-438 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016568/1-534 RSLLLLAMAP KRKPQVQREG PEKKKGRQGA QEEDSFRSTA EAL---PTEK 51 100 ENSP00000381740/1-540 RIIRVDPTCP LSSNPGTQVY EDYNCTLNQT NIENNNNKFY IIQLLQDSNR ENSBTAP00000043156/1-504 CIARVDPSCP LSCNPGTQVH EDYNCTLNQT NIERN-NKFY IIQLLKDADC bmy_11542T0/1-438 ----MDPLCP LSCNPGTQVH EDYDCTLNQT NIGSNNNKFY IIQLLEEGDC ENSTTRP00000016568/1-534 RIA-VDPLCP LSCNPRTQVH EDYDCALNQT NTGSNKNKFY IIQLLEEGDC 101 150 ENSP00000381740/1-540 FFTCWNHWGR VGEVGQSKIN HFTRLEDAKK DFEKKFREKT KNNWAERDHF ENSBTAP00000043156/1-504 FF-CWTRWGR VGEVGQSKLS RFESLEDAKK SFEKKFRDKT KNSWAERDHF bmy_11542T0/1-438 FI-CWNRWGH V--------- ------DAQK DFEKKFRDKT KNSWAERDHF ENSTTRP00000016568/1-534 FI-CWNRWGR VGEVGQSQLS RFMSLEDAQK DFEKKFRDKT KNSWAERDHF 151 200 ENSP00000381740/1-540 VSHPGKYTLI EVQAEDEAQE AVVKVDRGPV RTVTKRVQPC SLDPATQKLI ENSBTAP00000043156/1-504 VAQPGKYTLT EVQREDEAQE VVEKVDGGPV KAVVQWVRPC SLDAATQKLI bmy_11542T0/1-438 VAHPSKYTLI EVQREDEAQE AMVKVDRGPV RTVVQQVQPC SLDAATQKLI ENSTTRP00000016568/1-534 VAHPSKYTLI EVQREDEAQE AMVKVDGGPV RTVVQQVQPC SLDAATQKLI 201 250 ENSP00000381740/1-540 TNIFSKEMFK NTMALMDLDV KKMPLGKLSK QQIARGFEAL EALEEALKGP ENSBTAP00000043156/1-504 TNIFSKDVFQ NAMALMNLDV KKMPLGKLSK QQIA-GFEAL EEVEAALKAP bmy_11542T0/1-438 TNIFSKDTFK NAMAIMNL-- ---------- ---------- --VEAALKAP ENSTTRP00000016568/1-534 TNIFSKDMFK NAMAI-KLDV KKMPLGKLSK QQISRGLEAL EAVEAALKAP 251 300 ENSP00000381740/1-540 TDGGQSLEEL SSHFYTVIPH NFGHSQPPPI NSPELLQAKK DMLLVLADIE ENSBTAP00000043156/1-504 ADSGRSLEEL SSHFYTIIPH NFGRSRPPPI NSPELLQAKK DMLLVLADIE bmy_11542T0/1-438 ADRGRSLEEL SSHFYTIIPH NFGHSQPPPI NSPELLQAKK DMLLVLADIE ENSTTRP00000016568/1-534 AGRGLSLEEL SSHFYTIIPH NFGRSQPPPI NSPELLQPKK DMLLVLADIE 301 350 ENSP00000381740/1-540 LAQALQAVSE QEK------- ---------- ---------- ---------- ENSBTAP00000043156/1-504 LAQTLQAAPE ETK------- ---------- ---------- ---------- bmy_11542T0/1-438 LAQTLQAAPE ETKWRRCHTH WTEITSSSSA SSSCWTQRRL RTRWAGPHRG ENSTTRP00000016568/1-534 LAQTLQAAPE ETK------- ---------- ---------- ---------- 351 400 ENSP00000381740/1-540 ---------- ----TVEEVP HPLDR----- -DYQLLKCQL QLLDSGAPEY ENSBTAP00000043156/1-504 ---------- ----KVEEVP HPLDR----- -DYQLLKCQL QLLGPETPEY bmy_11542T0/1-438 AELAVPRRIP LLGPSLAVSP GPEESSGTAG DKWRLVHTLL ALGTQLLVSP ENSTTRP00000016568/1-534 ---------- ----KVEEVP HPLDR----- -DYQLLKCQL QLLDPKVPEY 401 450 ENSP00000381740/1-540 KVIQTYLEQT GSNHRCPTLQ HIWKVNQEGE EDRFQAHSKL GNRKLLWHGT ENSBTAP00000043156/1-504 KVVHAYLKQT SNSDRPPALQ HVYSHLPPPQ GDRFQVHAKL GNRKLLWHGT bmy_11542T0/1-438 QVIHTYLEKT GSKYSCPALQ HSWTVNREGE GDQFQAHDKL GNRKLLWHGT ENSTTRP00000016568/1-534 KVIHPCLEKT GSKYSCPALQ HSWTVNREGE GDQFQAHDKL GNRKLLWHGT 451 500 ENSP00000381740/1-540 NMAVVAAILT SGLRIMPHSG GRVGKGIYFA SENSKSAGYV IGMKCGAHHV ENSBTAP00000043156/1-504 NVAVVAAILT SGLRIMPHSG GRVGNGICFS SENHKSAGCV IGISCGAHHI bmy_11542T0/1-438 NMAVVAAILT SGLRIMPHSG GRVGKGIYFA SENSK----- ---------- ENSTTRP00000016568/1-534 NVAVVAAILT SGLRIRPHSG GRVGKGIYFA SENSKSDGYV TGMSCGAHDI 501 550 ENSP00000381740/1-540 GYMFLGEVAL GREHHINTDN PSLKSPPPGF DSVIARGHTE PDPTQDTELE ENSBTAP00000043156/1-504 GYMFLGEVAL GREYHITVDE PRLKQPPSGF DSVIARGHTE PDPTRDTELE bmy_11542T0/1-438 ---------- --EYHITVYE PSLKQPPPGF DSVIARGHTE PVPTQDTKLE ENSTTRP00000016568/1-534 GYMFLGEVAV RREYRITVYE PSLKQHPPGF DSVITRGHTE PVPTQDTKLE 551 600 ENSP00000381740/1-540 LDGQQVVVPQ GQPVPCPEFS SSTFSQSEYL IYQESQCRLR YLLEVHL ENSBTAP00000043156/1-504 LDGQRVVVPQ GQPVLCPDFR SCNFSQSEYL IYQESQRCLR YLLEIHL bmy_11542T0/1-438 LDGQRVVVP- ---------- ---------- ---------- ------- ENSTTRP00000016568/1-534 LDGQQVVVPQ GQPMPCPEFS SSSFFQSEYL IYQESQCRLC YLLEVRL