KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:54:27 2014 Check: 00 .. Name: ENSP00000387549/1-525 Len: 525 Check: 8368 Weight: 1.00 Name: ENSBTAP00000043172/1-524 Len: 525 Check: 7381 Weight: 1.00 Name: ENSTTRP00000012974/1-517 Len: 525 Check: 7030 Weight: 1.00 Name: bmy_22269T0/1-481 Len: 525 Check: 3914 Weight: 1.00 Name: BACU010705/1-488 Len: 525 Check: 453 Weight: 1.00 // 1 50 ENSP00000387549/1-525 MLRTILDAPQ RLLKEGRASR QLVLVVVFVA LLLDNMLFTV VVPIVPTFLY ENSBTAP00000043172/1-524 MLRTVLDAPQ RLLKKGRESR KLVLLVVFVA LLLDNMLLTV VVPIVPTYLY ENSTTRP00000012974/1-517 MLRAVLDVPQ WLLKKGRESR KLVLLVVFVA LLLDNMLLTV VVPIVPTYLY bmy_22269T0/1-481 MLRAALDAPQ WLLKKGRESR KLVLLVVFVA LLLDNMLLTV VVPIVPTYLY BACU010705/1-488 MLRAALDVPQ WLLKKGRESR KLVLLVVFVA LLLDNMLLTV VVPIVPTYLY 51 100 ENSP00000387549/1-525 DMEFKEVNSS LHLGHAGSSP HALASPAFST IFSFFNNNTV AVEESVPSGI ENSBTAP00000043172/1-524 AIEFKDINGS LYLGSATTTQ PSL-TPAFST ILSFFENNTV AVEESVPSGI ENSTTRP00000012974/1-517 ATEFK-VNTS VYPGPTTASQ PAL-TSTSST IFSFFENNTL AIEESVPGGI bmy_22269T0/1-481 ATEFK-VNTS LYPGPTTASQ PAL-TSAFST IFPFFENNTL AIEESVPSGI BACU010705/1-488 ATEFK-VNTS LYPGPTTASQ PAL-TSAFST IFPFFENNTL AIEESVPSGI 101 150 ENSP00000387549/1-525 AWMNDTASTI PPPATEAISA HKNNCLQGTG FLEEEITRVG VLFASKAVMQ ENSBTAP00000043172/1-524 ARTSSISGTI SPPVTEAIPA HGNNCFQATE FLKEENLWVG VLFASKALMQ ENSTTRP00000012974/1-517 AWTSDTPGTV PAPVTEAIPA HENNCFQGTE FLKEENLWVG LLFASKALMQ bmy_22269T0/1-481 AWTSDTSGTI PPPVTEAIPA HENNCFQGTE FLKEENXWVG LLFASKALMQ BACU010705/1-488 AWTSDTSGTI PPPVTEAIPA HENNCFQGTE FLKEENIWVG LLFASKALMQ 151 200 ENSP00000387549/1-525 LLVNPFVGPL TNRIGYHIPM FAGFVIMFLS TVMFAFSGTY TLLFVARTLQ ENSBTAP00000043172/1-524 LLVNPFVGPL TNRIGYHIPM FAGFVIMFIS TVMFAFSGTY TLLFVARTLQ ENSTTRP00000012974/1-517 LLVNPFVGPL TNRIGYHIPM FAGFVIVFIS TVXXXXXXXX XXXXXXXXXX bmy_22269T0/1-481 LLVNPFVGPL TNRIGYHIPM FAGFVIMFIS TVMFAFSGTY TLLFVARTLQ BACU010705/1-488 LLVNPFVGPL TNRIGYHIPM FAGFVIMFIS TVMFAFSGTY TLLFVARTLQ 201 250 ENSP00000387549/1-525 GIGSSFSSVA GLGMLASVYT DDHERGRAMG TALGGLALGL LVGAPFGSVM ENSBTAP00000043172/1-524 GIGSSFSSVA GLGMLACVYT DDHERGRAMG IALGGLALGV LVGAPFGSVT ENSTTRP00000012974/1-517 XXXXXXXSVA GLGMLASVYT DDCERGQAMG IALGGLALGV LVGAPFGSVT bmy_22269T0/1-481 GIGSSFSSVA GLGMLASVYT DDCERGQAMG IALGGLALGV LVGAPFGSVT BACU010705/1-488 GIGSSFSSVA GLGMLASVYT DDCERGQAMG IALGGLALGV LVGAPFGSVT 251 300 ENSP00000387549/1-525 YEFVGKSAPF LILAFLALLD GALQLCILQP SKVSPESAKG TPLFMLLKDP ENSBTAP00000043172/1-524 YVFLGKTVPF LILAFLALLD GALQLCILQP SKVSPESAKG TPLLTLLRDP ENSTTRP00000012974/1-517 YVLWGKTVPF LILASLALLD GALQLCILQP SKVSPESAKG TPLLTLVRDP bmy_22269T0/1-481 YVFLGKIVPF LILAFLALLD G--------- ---------- ---------- BACU010705/1-488 YVFLGKIVPF LILAFLALLD G--------- ---------- ---------- 301 350 ENSP00000387549/1-525 YILVAAGSIC FANMGVAILE PTLPIWMMQT MCSPKWQLGL AFLPASVSYL ENSBTAP00000043172/1-524 YILVAAGSIC LANMGVAMLE PTLPIWMLQT MCAPEWQLGL AFLPASVSYL ENSTTRP00000012974/1-517 FILVAAGSLC FANMGVAMLE PTLPIWMMQT MCAPEWQLGL AFLPSSVSYL bmy_22269T0/1-481 ------GSLC FANMGVAMLE PTLPIWMMQT MCAPEWQLGL AFLPASVSYL BACU010705/1-488 ------GSLC FANMGVAMLE PTLPIWMMQT MCAPDWQLGL AFLPASVSYL 351 400 ENSP00000387549/1-525 IGTNLFGVLA NKMGRWLCSL IGMLVVGTSL LCVPLAHNIF GLIGPNAGLG ENSBTAP00000043172/1-524 IGTSLFGVLA NKMGRWLCSL IGMLVVGTSL LCVPLAHDIF GLIGPNAGLG ENSTTRP00000012974/1-517 IGTNLFGVLA NKMGRWLCSL IGMVVVGTSL LCIPLARNIF GLIGPNAGLG bmy_22269T0/1-481 IGTNLFGVLA NKMGRYVAWR SGKSQV---- ---PLAHNIF GLIGPNAGLG BACU010705/1-488 IGTNLFGVLA NKMGRWLCSL IGMVVVGTSL LCVPLAHNIF GLIGPNAGLG 401 450 ENSP00000387549/1-525 LAIGMVDSSM MPIMGHLVDL RHTSVYGSVY AIADVAFCMG FAIGPSTGGA ENSBTAP00000043172/1-524 ISIGMVDSSM MPIMGHLVDL RHAPVYGSVY AIADVAFCLG FAVGPSTGGA ENSTTRP00000012974/1-517 FSIGMVDSSM MPIMGHLVDL RHAPVYGSIY AIADVAFCMG FAIGPSTGGA bmy_22269T0/1-481 FSIGMVDSSI MPIMGHLVDL RHAPVYGSVY AIADVAFCMG FAIGPSTGGA BACU010705/1-488 FSIGMVDSSM MPIMGHLVDL RHAPVYGSVY AIADVAFCMG FAIGPSTGGA 451 500 ENSP00000387549/1-525 IVKAIGFPWL MVITGVINIV YAPLCYYLRS PPAKEEKLAI LSQDCPMETR ENSBTAP00000043172/1-524 IVRAIGFPWL MVITGVTDII YAPLCYYLRS PPAKEEKLAV LSQDCPMETR ENSTTRP00000012974/1-517 IVQAIGFPWL MVIIGVINII YAPLCYYLRS PPAKEEKL-- ----CPMETR bmy_22269T0/1-481 IVQAIGFPWL MVIIGVINII YAPLCYYLRS PPAKEEKLAV LSQDCPMETR BACU010705/1-488 IVQAIGFPWL MVIIGVINII YAPLCYYLRS PPAKEEKLAV LSQDCPMETR 501 550 ENSP00000387549/1-525 MYATQKPTKE FPLGEDSDEE PDHEE ENSBTAP00000043172/1-524 MYAAEKHTRQ FPLGEDSDEE PGCEE ENSTTRP00000012974/1-517 MHAAEKHMRE FPLGEDSDEE PGCEE bmy_22269T0/1-481 MHAAEKHMRE FPLGEDSDEE PGYEA BACU010705/1-488 MHAAEKHMRE FPLGEDSDEE PGCEE