KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:54:27 2014 Check: 00 .. Name: ENSTTRP00000010855/1-500 Len: 669 Check: 2149 Weight: 1.00 Name: ENSP00000342098/1-529 Len: 669 Check: 1401 Weight: 1.00 Name: ENSBTAP00000043206/1-513 Len: 669 Check: 5783 Weight: 1.00 Name: bmy_09176T0/1-607 Len: 669 Check: 6319 Weight: 1.00 Name: BACU008520/1-529 Len: 669 Check: 4754 Weight: 1.00 // 1 50 ENSTTRP00000010855/1-500 TVPGGMMAGA RLSQARIPAV AVWLLCSLGL LGTEAGPPPV PPSLLTADNC ENSP00000342098/1-529 MAPARTMARA RLAPAGIPAV ALWLLCTLGL QGTQAGPPPA PPGLPAGADC ENSBTAP00000043206/1-513 ------MAGG RLSRARIPAV AVWLLCALVL QGAEAGPPPV TPGLLTADGC bmy_09176T0/1-607 -----MMAGA RLSQARIPAV AVWLLCALGF LGTEAGPPPV PPSLLTADNC BACU008520/1-529 -----MMAGA RLSQARIPAV AVWLLCALGL LGTEAGPPPL PPSLLTADNC 51 100 ENSTTRP00000010855/1-500 LDRFTPGVPA FVLDTDASVR NGATFLRSLT VRRGRDCVHA CCSSNDCNLA ENSP00000342098/1-529 LNSFTAGVPG FVLDTNASVS NGATFLESPT VRRGWDCVRA CCTTQNCNLA ENSBTAP00000043206/1-513 LNRFTPGVPD FVLDTDASVR NGATFLRSLT ARRGRDCVHA CCSSNDCNLA bmy_09176T0/1-607 LDRFTPGVPA FVLDTDASVR NGATFLRSLT VRRGRDCVHA CCSSNDCNLA BACU008520/1-529 LDRFTPGVPA FVLDTDASVR NGATFLRSLT VRRGRDCVHA CCSSNDCNLA 101 150 ENSTTRP00000010855/1-500 LVELQPDGGE DAIASCFLIN CLYEQNFVCK FAPRKGFINY LTREVYRSYL ENSP00000342098/1-529 LVELQPDRGE DAIAACFLIN CLYEQNFVCK FAPREGFINY LTREVYRSYR ENSBTAP00000043206/1-513 LVELQPDGGE DAIVSCFLIN CLYEQNFVCK FAPREGFINY LTREVYRSYR bmy_09176T0/1-607 LVELQPDGGE DAIASCFLIN CLYEQNFVCK FAPREGFINY LTREVYRSYR BACU008520/1-529 LVELQPDGGE AAIASCFLIN CLYEQNFVCK FAPREGFINY LTREVYRSYR 151 200 ENSTTRP00000010855/1-500 ELRTQGFVXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000342098/1-529 QLRTQGFGGS GIPKAWAGID LKVQPQEPLV LKDVENTDWR LLRGDTDVRV ENSBTAP00000043206/1-513 ELRTQGFRGS RIPMAWDGID LKVQPQEPLV LKGVENTDWR LLRGDTDIRV bmy_09176T0/1-607 ELRTQGFGGS RIPKAWEGTD LKVQPQEPLV LKGVESTDWH LLQGDTDVRV BACU008520/1-529 ELRTQGFGGS RIPKAWEGTD LKVQPQEPLV LKGVESTDWH LLQGDTDVRV 201 250 ENSTTRP00000010855/1-500 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000342098/1-529 ERKDPNQVEL WGLKEGTYLF QLTVTSSDHP EDTANVTVTV LSTKQTEDYC ENSBTAP00000043206/1-513 ERNDPDQVEL WGLKEGSYLF QLTATGSDQP ERTSNVTVTV LSPEQTEEYC bmy_09176T0/1-607 KRNDPDQVEL WGLKEGSYLF QLTVAGSDQP ESMSNITVTV LSPKQTEEYC BACU008520/1-529 KRNDPDQVEL WGLKEGTYLF QLTAAGSDQP ESTSNITVTV LSPKQTEEYC 251 300 ENSTTRP00000010855/1-500 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000342098/1-529 LASNKVGRCR GSFPRWYYDP TEQICKSFVY GGCLGNKNNY LREEECILAC ENSBTAP00000043206/1-513 LASRKVGRCR GSFPRWYYDP TEQICKSFVY GGCLGNKNNY LREEECKLAC bmy_09176T0/1-607 LASSKVGRCR GSFPRWYYNP TEQICKSFIY GGCLGNKNNY LREEECKLAC BACU008520/1-529 LASSKVGRCR GSFPRWYYNP TEQICKSFVY GGCLGNKNNY LREEECKLAC 301 350 ENSTTRP00000010855/1-500 XXXXXXXXXX XXXXXXXXXX XPSVERHH-- ---------- ---------- ENSP00000342098/1-529 RGVQGGPLRG SSGAQATFPQ GPSMERRH-- ---------- ---------- ENSBTAP00000043206/1-513 RNVQG----- ---------- -PSAERHH-- ---------- ---------- bmy_09176T0/1-607 RNVQG----- ---------- -PSVERHHPG GLCSCPYSPH PCQLSNLSQV BACU008520/1-529 RNVQG----- ---------- -PSVERHH-- ---------- ---------- 351 400 ENSTTRP00000010855/1-500 ---------- ---------- ---------- ---------- ---------- ENSP00000342098/1-529 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000043206/1-513 ---------- ---------- ---------- ---------- ---------- bmy_09176T0/1-607 QAPDHTALAQ QPIPTLRMKA HECPSPCSPG SSYQLLPILC VEGYKGQGWK BACU008520/1-529 ---------- ---------- ---------- ---------- ---------- 401 450 ENSTTRP00000010855/1-500 ---------- ---------- ---------- ---------- -PVCSGTCHS ENSP00000342098/1-529 ---------- ---------- ---------- ---------- -PVCSGTCQP ENSBTAP00000043206/1-513 ---------- ---------- ---------- ---------- -PVCSGSCHS bmy_09176T0/1-607 GNRGCVMMPP WGREGQVDDG LLVFAGHCLS LTSPSTPSRP HPVCSGTCHS BACU008520/1-529 ---------- ---------- ---------- ---------- -PVCSGTCHS 451 500 ENSTTRP00000010855/1-500 SEFRCSDGCC IDSFLECDDT PDCPDASDEA TCEKYTRGFD KLQKIHFPRD ENSP00000342098/1-529 TQFRCSNGCC IDSFLECDDT PNCPDASDEA ACEKYTSGFD ELQRIHFPSD ENSBTAP00000043206/1-513 SKFRCGDGCC IDSFLECDDT PDCPDASDEA TCEKYTRDFD KLQRIHFPGD bmy_09176T0/1-607 SKFRCSDGCC IDSFLECDDT PDCPDASDEA TCENYTRGFD KLQRIHFPRD BACU008520/1-529 SKFRCSDGCC IDSFLECDDT PDCPDASDEA ACEKYTRGFD KLQRIHFPTD 501 550 ENSTTRP00000010855/1-500 KGHCVDLPDT GLCLESIPRW YYNPFTERCA RFTYGGCYGN KNNFEEEEQC ENSP00000342098/1-529 KGHCVDLPDT GLCKESIPRW YYNPFSEHCA RFTYGGCYGN KNNFEEEQQC ENSBTAP00000043206/1-513 KGHCVDMPDT GLCSESIPRW YYNPFTEHCA RFTYGGCYGN KNNFEEEEQC bmy_09176T0/1-607 KGHCMDLPDT GLCLESIPRW YYNPFTERCA RFTYGGCYGN KNNFEEEEQC BACU008520/1-529 KGHCVDLPDT GLCLESIPRW YYNPFTERCA RFTYGGCYGN KNNFEGEEQC 551 600 ENSTTRP00000010855/1-500 LESCRVISKK DVFGLRRESP IPNTDS---- --VEVAIAVL L-TCI-VEVA ENSP00000342098/1-529 LESCRGISKK DVFGLRREIP IPSTGS---- --VEMAVAVF LVICIVVVVA ENSBTAP00000043206/1-513 LESCRGISKK DVFGLRRESP VPNTGSLPPP GPVEVAIAVL LGTCIVVVVA bmy_09176T0/1-607 LESCRGISR- ---------- -----S---- --VEVAIAVL LGTCIVVVVA BACU008520/1-529 LESCRGISKK DVFGLRRESP IPNTGS---- --VEVAIAVL LGTCIVVVVT 601 650 ENSTTRP00000010855/1-500 ILGYCCF--D QRGFTEHH-- -----TPTST ---------- ---------- ENSP00000342098/1-529 ILGYCFFKNQ RKDFHGHHHH PPP--TPASS ---------- ---------T ENSBTAP00000043206/1-513 ILGYCFFKNQ RKDFHRHRH- -PPPSTPTSS ---------- ---------K bmy_09176T0/1-607 ILGYCFFKNQ RKGFHRHRHH PPPPSTPTST ---------- ---------K BACU008520/1-529 ILGYCFFKHQ RKGFHRHRHH PPPPSTPTST KVSTTEDMEH LPPSTPTSSK 651 700 ENSTTRP00000010855/1-500 ---------- --------- ENSP00000342098/1-529 VSTTEDTEHL VYNHTTRPL ENSBTAP00000043206/1-513 VSTTDDMEHL VYYQTTRPL bmy_09176T0/1-607 VSTTEDMEHL VYYQTTRPL BACU008520/1-529 VSTTEDMEHL VYYQTTRPL