KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:54:28 2014 Check: 00 .. Name: ENSP00000204604/1-955 Len: 1095 Check: 4590 Weight: 1.00 Name: ENSBTAP00000043209/1-938 Len: 1095 Check: 5924 Weight: 1.00 Name: BACU016564/1-875 Len: 1095 Check: 3752 Weight: 1.00 Name: bmy_10414T0/1-648 Len: 1095 Check: 9342 Weight: 1.00 Name: ENSTTRP00000010672/1-908 Len: 1095 Check: 3582 Weight: 1.00 // 1 50 ENSP00000204604/1-955 MPSLPAPPAP LLLLGLLLLG SRPARGAGPE PPVLPIRSEK EPLPVRGAAG ENSBTAP00000043209/1-938 ---------- --RGPARSAR GGHTAGAGQR PPAKPV---- -------PAG BACU016564/1-875 ---------- ---------- ---------- ---------- ---------- bmy_10414T0/1-648 ---------- -----AGSAR GGHTAGAGQL PPAKSV---- -------PAG ENSTTRP00000010672/1-908 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000204604/1-955 CTFGGKVYAL DETWHPDLGE PFGVMRCVLC ACEAPQWGRR TRGPGRVSCK ENSBTAP00000043209/1-938 CSFGGKVYAL DETWHPDLGE PFGVMRCVLC ACEAPQWGRR ARGAGRVSCK BACU016564/1-875 ---------- ---------- ----MRCVLC ACEAPQWGRR ARGAGRVSCK bmy_10414T0/1-648 CSFGGKVYAL DETWHPDLGE PFGVMRCVLC ACEAPQWGRR ARGAGRVSCK ENSTTRP00000010672/1-908 CSFGGKVYAL DETWHPDLGE PFGVMRCVLC ACEAPQWGRR ARGAGRVSCK 101 150 ENSP00000204604/1-955 NIKPECPTPA CGQPRQLPGH CCQTCPQ--- ---------- ---------- ENSBTAP00000043209/1-938 NIKPECPTLA CGQPRQLPGH CCQTCPQ--- ---------- ---------- BACU016564/1-875 NIKPECPTLA CGQPRQLPGH CCQTCPQ--- ---------- ---------- bmy_10414T0/1-648 NIKPECPTLA CGQPRQLPGH CCQTCPQGKA RSAVRGGQQG RDAWSWATRM ENSTTRP00000010672/1-908 NIKPECPTLA CGQPRQLPGH CCQTCPQ--- ---------- ---------- 151 200 ENSP00000204604/1-955 ---------- ---------- ---ERSSSER QPSGLSFEYP RDPEHRSYSD ENSBTAP00000043209/1-938 ---------- ---------- ---EHSSPEK QPTGLAFEYP RDPEHRSYSD BACU016564/1-875 ---------- ---------- ---ERSGLEK QPTGLAFEYP RDPEHRSYSD bmy_10414T0/1-648 ERMERPTGPP RAQLKPASPT PGAERSGLEK QPTGLAFEYP RDPEHRSYSD ENSTTRP00000010672/1-908 ---------- ---------- ---ERSGPET QPTGLAFEYP RDPEHRSYSD 201 250 ENSP00000204604/1-955 RGEPGAEERA RGDGHT---- -DFVALLTGP RSQAVARARV SLLRSSLRFS ENSBTAP00000043209/1-938 RGEPGAEDRG RGDGHT---- -DFVALLTGP RSQAVARARV SLQRSSLRFS BACU016564/1-875 RGEPGAEDRG RGDGHTGRQG LDFVALLTGP RSQAVARARV SLLRSSLRFS bmy_10414T0/1-648 RGEPGAEDRG RGDGHTGRQG LDFVALLTGP RSQAVARARV SLLRSSLRFS ENSTTRP00000010672/1-908 RGEPGAEDRG RGDGHT---- -DFVALLTGP RSQAVARARV SLLRSSLRFS 251 300 ENSP00000204604/1-955 ISYRRLDRPT RIRFSDSNGS VLFEHPAAPT QDGLVCGVWR AVPRLSLRLL ENSBTAP00000043209/1-938 ISYRRLDRPT RIRFSDSTGS ILFEHPAAPT QDGLVCGVWR AVPRLSLRLL BACU016564/1-875 ISYRRLDRPT RIRFSDSTGS ILFEHPAAPT QDGLVCGVWR AVPRLSLRLL bmy_10414T0/1-648 ISYRR----- ---------P VLHSEQSLLV CLLQVCGVWR AVPRLSLRLL ENSTTRP00000010672/1-908 ISYRRLDRPT RIRFSDSTGS ILFEHPAAPT QDGLVCGVWR AVPRLSLRLL 301 350 ENSP00000204604/1-955 RAEQLHVALV TLTHPSGEVW GPLIRHRALA AETFSAILTL EGPPQQGVGG ENSBTAP00000043209/1-938 RAEQLYVALV TPTQPSGEVW GPLIRHRALA AETFSAILTL EGPPQPGIGG BACU016564/1-875 RAEQLHVALV TPSHPSGEVW GPLIRHRALA AETFSAILTL EGPPQQGIGG bmy_10414T0/1-648 RAEQLHVALV TPSHPSGEVW GPLIRHRALA AETFSAILTL EGPPQQGIGG ENSTTRP00000010672/1-908 RAEQLHVALV TPSHPSGEVW GPLIRHRALA AETFSAILTL EGPPQQGIGG 351 400 ENSP00000204604/1-955 ITLLTLSDTE DSLHFLLLFR GLLEPRSG-- ---------- ---------- ENSBTAP00000043209/1-938 IALLTLSDTE DSLHFLLLFR GLLESRSG-- ---------- ---------- BACU016564/1-875 IALLTLSDTE DSLHFLLLFR GLLEARSG-- ---------- ---------- bmy_10414T0/1-648 IALLTLSDTE DSLHFLLLFR GLLEARSGGK WDGGSTCEEG REITYVSEVS ENSTTRP00000010672/1-908 IALLTLSDTE DSLHFLLLFR GLLEARSG-- ---------- ---------- 401 450 ENSP00000204604/1-955 ------GLTQ VPLRLQILHQ GQLLRELQAN VSAQEPGFAE VLPNLTVQEM ENSBTAP00000043209/1-938 ------GPAQ VPLRLQILHQ GKLLRELQAN ASAQEPGFAE VLPNLTAQEM BACU016564/1-875 ------GPAQ VPLRLQILHQ GKLLRELQAN ASAQEPGFAE VLPNLTSQEM bmy_10414T0/1-648 TCAAVAGPAQ VPLRLQILHQ GKLLRELQAN ASAQEPGFAE VLPNLTAQEM ENSTTRP00000010672/1-908 ------GPAQ VPLRLQILHQ GKLLRELQAN ASAQEPGFAE VLPNLTAQEM 451 500 ENSP00000204604/1-955 DWLVLGELQM ALEWAGRPGL RISGHIAARK SCDVLQSVLC GADALIPVQT ENSBTAP00000043209/1-938 DWLVLGELQM ALERASGPGL RISGHIAARQ SCDVLQSVLC GADALIPVQT BACU016564/1-875 DWLVLGELQM ALERASGPGL RISGHIAARQ SCDVLQSVLC GADALIPVQT bmy_10414T0/1-648 DWLVLGELQM ALERASGPGL RISGHIAARQ SCDVLQSVLC GADALIPVQT ENSTTRP00000010672/1-908 DWLVLGELQM ALERASGSGL RISGHIAARQ SCDVLQSVLC GADALIPVQT 501 550 ENSP00000204604/1-955 GAAGSASLTL LGNGSLIYQV QVVGTSSEVV AMTLETKPQR RDQRTVLCHM ENSBTAP00000043209/1-938 GAAGSASLTL LGNGSLIYQV QVVGTGSEVV AMTLETKPQR RNQHTVLCHM BACU016564/1-875 GAAGSASLTL LGNGSLIYQV QVVGTGSEVV AMTLETKPQR RNQHTVLCHM bmy_10414T0/1-648 GAAGSASLTL LGNGSLIYQV QVVGTGSEVV AMTLETKPQR RNQHTVLCHM ENSTTRP00000010672/1-908 GAAGSASLTL LGNGSLIYQV QVVGTGSEVV AMTLETKPQR RNQHTVLCHM 551 600 ENSP00000204604/1-955 AGLQPGGHTA VGICPGLGAR GAHMLLQNEL FLNVGTKDFP DGELRGHVAA ENSBTAP00000043209/1-938 VGLQPGGHRA VGICPGLGAR GAHMLLQNEL FLNVGTKDFP DGELRGHVAA BACU016564/1-875 AGLQLGGYMA VGVCPGLGAR GAHMLLQNEL FLNVGTKDFP DGELRGHVAA bmy_10414T0/1-648 AGLQPGGYMA VGVCLGLGAR GAHMLLQNEL FLNVGTKDFP DGELRGHVAA ENSTTRP00000010672/1-908 AGLQPGGYMA VGVCPGLGAR GAHMLLQNEL FLNVGTKDFP DGELRGHVAA 601 650 ENSP00000204604/1-955 LPYCGHSARH DTLPVPLAGA LVLPPVKSQA AGHAWLSLDT HCHLHYEVLL ENSBTAP00000043209/1-938 LPYSGHSARH DTLPVPLAGA LVLPPVQSQA AGHAWLSLDT HCHLHYEVLL BACU016564/1-875 LPYSGHSARH DTLPVPLAGA LVLPPVQSQA AGHAWLSLDT HCHLHYEVLL bmy_10414T0/1-648 LPYSGHSARH DTLPVPLAGA LVLPPVQSQA AGHAWLSLDT HCHLHYEVLL ENSTTRP00000010672/1-908 LPYSGHSARH DTLPVPLAGA LVLPPVQSQA AGHAWLSLDT HCHLHYEVLL 651 700 ENSP00000204604/1-955 AGLGGSEQGT VTAHLLGPPG TPGPRRLLKG FYGSEAQGVV KDLEPELLRH ENSBTAP00000043209/1-938 AGLGGSEQGT ITAHLLGPPG MPGPRRLLKG FYGPEAQGVV KDLEPELLRH BACU016564/1-875 AGLGGSEQGT ITAHLLGPPG MPGPRRLLKG FYGPEAQGVV KDLEPELLRH bmy_10414T0/1-648 AGLGGSEQGT ITAHLLGPPG MPGPRRLLKG FYGPEVRT-- ---------- ENSTTRP00000010672/1-908 AGLGGSEQGT ITAHLLGPPG MPGPRRLLKG FYGPEAQGVV KDLEPELLRH 701 750 ENSP00000204604/1-955 LAKGMASLMI TTKGSPRGEL RGQVHIANQC EVGGLRLEAA GAEGVRALGA ENSBTAP00000043209/1-938 LAQGSASLLI TTKGSPQGEL RGQVHIANQC EVGGLRLAAA GDQEVQAPGA BACU016564/1-875 LAQGSASLLI TTKGSPQGEL QGQVHITNQC EAGGLRLAAA GAEEVRVPGA bmy_10414T0/1-648 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010672/1-908 LAQGSASLLI TTKGSPQGEL RGQVHIANQC EAGGLRLAAA GAEEVRVPGA 751 800 ENSP00000204604/1-955 PDTA---SAA PPVVPGLPAL APAKPGGPGR PRDPNTCFFE GQQRPHGARW ENSBTAP00000043209/1-938 LEAVAAMVAP LPAVPGPDTP VPARPGGPSR LRDPNTCFFE GQQRPHGARW BACU016564/1-875 LDAVVAEAAA LPAVLGPDAP APAKPGGPGR LRDPNTCFFE GQQRPHGARW bmy_10414T0/1-648 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010672/1-908 LDAVVAEVAA LPAVLGPDAP APAKPGGPGR LRDPNTCFFE GQQRPHGARW 801 850 ENSP00000204604/1-955 APNYDPLCSL CTCQRRTVIC DPVVCPPPSC PHPVQAPDQC CPVCP---EK ENSBTAP00000043209/1-938 APNYDPLCSL CICQRRTVIC DPVVCPPPSC PSPVQAPDQC CPVCPGSTEK BACU016564/1-875 APNYDPLCSL CTCQRRTVIC DPMVCPPPSC PSPVQAPDQC CPVCL---EK bmy_10414T0/1-648 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010672/1-908 APNYDPLCSL CTCQRRTVIC DPMVCPPPSC PSPVQEPDQF CSVCP---EK 851 900 ENSP00000204604/1-955 QDVRDLPGLP RSRDPGEGCY FDGDRSWRAA GTRWHPVVPP FGLIKCAVCT ENSBTAP00000043209/1-938 QDVKDLPGLP RNRDPGEGCY FDGDRSWRAA GTRWHPVVPP FGLIKCAVCT BACU016564/1-875 QDVRDLPGLP KNRDPGE--- ---------- ---------- ---------- bmy_10414T0/1-648 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010672/1-908 QDVGDLPGLP KNRDPGEGCY FDGDRSWRAA GTRWHPVVPP FGLIKCAVCT 901 950 ENSP00000204604/1-955 CKGGTGEVHC EKVQCPRLAC AQPVRVNPTD CCKQCPVGSG AHPQLGDPMQ ENSBTAP00000043209/1-938 CKGGTGEVHC EKVQCPRLAC AQPVRANPTD CCKQCPVGSG GHPQLGDPMQ BACU016564/1-875 ---------- ---------- ---------- ------VGSG AHPQLGDPMQ bmy_10414T0/1-648 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010672/1-908 CKGGTGEVHC EKVQCPRLAC AQPVRANPTD CCKQCPVGSG AHPQLGDPMQ 951 1000 ENSP00000204604/1-955 ADGPRGCRFA GQWFPESQSW HPSVPPFGEM SCITCRCG-- --AGVPHCER ENSBTAP00000043209/1-938 ADGPRGCRFA GQWFPESQSW HPSVPPFGEM SCITCRCG-- --AGVPHCER BACU016564/1-875 ADGPRGCRFA GQWFPESQSW HPSVPPFGEM SCITCRCGQL QTPGQSQSWR bmy_10414T0/1-648 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010672/1-908 ADGPRGCRFA GQWFPESQSW HPSVPPFGEM SCITCRCG-- --AGVPHCER 1001 1050 ENSP00000204604/1-955 DDCSLP---- -------LSC GSGKESRCCS R--------- ---------- ENSBTAP00000043209/1-938 DDCSPP---- -------LSC GPGKESRCCS H--------- ---------- BACU016564/1-875 KKLKAPREQP EGRVTKRMGP GLGEEGRRGP RILLRELQCL WPLFSASSPS bmy_10414T0/1-648 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010672/1-908 DDCSLP---- -------LSC GPGKESRCCS H--------- ---------- 1051 1100 ENSP00000204604/1-955 ---------- ---------- -CTAHRRPAP ETRTDPELEK EAEGS ENSBTAP00000043209/1-938 ---------- ---------- -CTPRRRPAP ETRTVPELGK EDEGS BACU016564/1-875 PTTSGNHNST RGGGSQGRPM PCPLQLRPCH PLASALEAQP LSFCT bmy_10414T0/1-648 ---------- ---------- ---------- ---------- ----- ENSTTRP00000010672/1-908 ---------- ---------- -CTARRRSVA DTRTVPELEK EAEGS