KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:54:31 2014 Check: 00 .. Name: ENSTTRP00000009980/1-690 Len: 864 Check: 7316 Weight: 1.00 Name: ENSBTAP00000043258/1-711 Len: 864 Check: 3860 Weight: 1.00 Name: ENSP00000299853/1-708 Len: 864 Check: 9240 Weight: 1.00 Name: bmy_12038T0/1-752 Len: 864 Check: 4462 Weight: 1.00 Name: BACU013835/1-823 Len: 864 Check: 2567 Weight: 1.00 // 1 50 ENSTTRP00000009980/1-690 MANE------ ----EDDPVI Q--------- ---------- ---------- ENSBTAP00000043258/1-711 MANE------ ----EDDPVV Q--------- ---------- ---------- ENSP00000299853/1-708 MANE------ ----EDDPVV Q--------- ---------- ---------- bmy_12038T0/1-752 MANE------ ----EDDPVI Q--------- ---------- ---------- BACU013835/1-823 MAPDYFSSVF ITAVDQPPSI LLPGGEFFIE SKDRVAGSPL VWPMKRMTQS 51 100 ENSTTRP00000009980/1-690 ---------- ---------- ---EIDVYLA KSLAEKLYLF QYPVRPVSMT ENSBTAP00000043258/1-711 ---------- ---------- ---EIDVYLA KSLAEKLYLF QYPVRPASMT ENSP00000299853/1-708 ---------- ---------- ---EIDVYLA KSLAEKLYLF QYPVRPASMT bmy_12038T0/1-752 ---------- ---------- ---EIDVYLA KSLAEKLYLF QYPVRPVSMT BACU013835/1-823 YRRPGGGREH GSQEELGSRK VNCEIDVYLA KSLAEKLYLF QYPVRPVSMT 101 150 ENSTTRP00000009980/1-690 YDDIPHLSAR IKPKQQKVEL EMAIDTLNPN YCRSKGEQIA LNVDGACADE ENSBTAP00000043258/1-711 YDDIPHLSAK IKPKQQKVEL EMAIDTLNPN YCRSKGEQIA LNVDGACADE ENSP00000299853/1-708 YDDIPHLSAK IKPKQQKVEL EMAIDTLNPN YCRSKGEQIA LNVDGACADE bmy_12038T0/1-752 YDDIPHLSAR IKPKQQKVEL EMAIDTLNPN YCRSKGEQIA LNVDGACADE BACU013835/1-823 YDDIPHLSAR IKPKQQKVEL EMAIDTLNPN YCRSKGEQIA LNVDGACADE 151 200 ENSTTRP00000009980/1-690 TSTYSS-LMD KQTFCSS-TT SNTSRYAAAL YRQGELHLTP LHGILQLRPS ENSBTAP00000043258/1-711 TSTYSSKLMD KQTFCSSQTT SNTSRYAAAL YRQGELHLTP LHGILQLRPS ENSP00000299853/1-708 TSTYSSKLMD KQTFCSSQTT SNTSRYAAAL YRQGELHLTP LHGILQLRPS bmy_12038T0/1-752 TGTYSSKLMD KQTFCSSQTT SNTSRYAAAL YRQGELHLTP LHGILQLRPS BACU013835/1-823 TGTYSSKLMD KQTFCSSQTT SNTSRYAAAL YRQGELHLTP LHGILQLRPS 201 250 ENSTTRP00000009980/1-690 FSYLDKADAK HREREAANE- ---------- ---------- ---------- ENSBTAP00000043258/1-711 FSYLDKADAK HREREAANE- ---------- ---------- ---------- ENSP00000299853/1-708 FSYLDKADAK HREREAANE- ---------- ---------- ---------- bmy_12038T0/1-752 FSYLDKADAK HREREAANE- ---------- ---------- ---------- BACU013835/1-823 FSYLDKADAK HREREAANEA TSVQKENSQA PLLETCLVGG VEEPPTEAAS 251 300 ENSTTRP00000009980/1-690 ------AGDS SQDEAEEDVK QITVRFSRPE SEQARQRRVQ SYEFLQKKHA ENSBTAP00000043258/1-711 ------AGDS SQDEAEEDVK QITVRFSRPE SEQARQRRVQ SYEFLQKKHA ENSP00000299853/1-708 ------AGDS SQDEAEDDVK QITVRFSRPE SEQARQRRVQ SYEFLQKKHA bmy_12038T0/1-752 ------AGDS SQDEAEEDVK QITVRFSRPE SEQARQRRVQ SYEFLQKKHA BACU013835/1-823 KAFSFAAGDS SQDEAEEDVK QITVRFSRPE SEQARQRRVQ SYEFLQKKHA 301 350 ENSTTRP00000009980/1-690 EEPWVHLHYY GLRDSRSEHE RQYLLCQGSS GVENTELVKS PSEYLMMLMP ENSBTAP00000043258/1-711 EEPWVHLHYH GLRDSRSEHE RQYLLCQGSS GVENTELVKS PSEYLMMLMP ENSP00000299853/1-708 EEPWVHLHYY GLRDSRSEHE RQYLLCPGSS GVENTELVKS PSEYLMMLMP bmy_12038T0/1-752 EEPWVHLHYY GLRDSRSEHE RQYLLCQGSS GVENTELVKS PSEYLMMLMP BACU013835/1-823 EEPWVHLHYY GLRDSRSEHE RQYLLCQGSG GVENTELVKS PSEYLMMLMP 351 400 ENSTTRP00000009980/1-690 PSQEEEKDKP VAPSNVLSMA QLRTLPLADQ IKILMKN--- -XXXXXXXXX ENSBTAP00000043258/1-711 PSQEEEKDKP VAPSNVLSMA QLRTLPLADQ IKILMKN--- -VKVMPFANL ENSP00000299853/1-708 PSQEEEKDKP VAPSNVLSMA QLRTLPLADQ IKILMKN--- -VKVMPFANL bmy_12038T0/1-752 PSQEEEKDKP VAPSNVLSMA QLRTLPLADQ IKILMKNGFN LTRAWGLSAS BACU013835/1-823 PSQEEEKDKP VAPSNVLSMA QLRTLPLADQ IKILMKN--- -VKVMPFANL 401 450 ENSTTRP00000009980/1-690 XXXXXX-XXX XXXVLRGIQK VAMLVQGNWV VKSDILYPKD SSSPHSGVPA ENSBTAP00000043258/1-711 MSLLGP-SVD SVAVLRGIQK VAMLVQGNWV VKSLLKYGWA SASPMLGPPA ENSP00000299853/1-708 MSLLGP-SID SVAVLRGIQK VAMLVQGNWV VKSDILYPKD SSSPHSGVPA bmy_12038T0/1-752 QSLTPPASAH TAPPFRFSQR ---------- ---DILYPKD SSSPHSGVPA BACU013835/1-823 MSLLGP-SID SVAVLRGIQK VAMLVQGNWV VKSDILYPKD SSSPHSGVPA 451 500 ENSTTRP00000009980/1-690 EVLCRGRDFV MWKFTQSRWV VRKEVAAVTK ---------- ---------- ENSBTAP00000043258/1-711 ALLCSCRHCH MWKFTQSRWV VRKEVAAVTK ---------- ---------- ENSP00000299853/1-708 EVLCRGRDFV MWKFTQSRWV VRKEVATVTK ---------- ---------- bmy_12038T0/1-752 EVLCRGRDFV MWKFTQSRWV VRKEVAAVTK VSEVLLGPRP GPTTGGMGAG BACU013835/1-823 EVLCRGRDFV MWKFTQSRWV VRKEVAAVTK ---------- ---------- 501 550 ENSTTRP00000009980/1-690 ---------- ------XXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000043258/1-711 ---------- ------LCTE DVKDFLEHMA VVRINKGWEF ILPYDGEFIK ENSP00000299853/1-708 ---------- ------LCAE DVKDFLEHMA VVRINKGWEF ILPYDGEFIK bmy_12038T0/1-752 WGFRAGLASP LAPSPQLCAE DVKDFLEHMA VVRINKGWEF ILPYDGEFIK BACU013835/1-823 ---------- ------LCAE DVKDFLEHMA VVRINKGWEF ILPYDGEFIK 551 600 ENSTTRP00000009980/1-690 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX PVGLVSGDQR ENSBTAP00000043258/1-711 KHPDVVQRQH MLWTGIQAKL EKVYNLVKEA MPKKPDGQSG PVGLVSGDQR ENSP00000299853/1-708 KHPDVVQRQH MLWTGIQAKL EKVYNLVKET MPKKPDAQSG PAGLVCGDQR bmy_12038T0/1-752 KHPDVVQRQH MLWTGIQAKL EKVYNLVKET MPKKPDGQSG PAGLVSGDQR BACU013835/1-823 KHPDVVQRQH MLWSGIQAKL EKVYNLVKET MPKKPDGQSG PAGLVSGDQR 601 650 ENSTTRP00000009980/1-690 VQVAKRQAQQ NHALLERELQ RRKEQLRASS VLPAVRIKEE PVSEEGEEEE ENSBTAP00000043258/1-711 VQVAKRQAQQ NHALLERELQ RRKEQLQASA VLPGVRIKEE PMSEEGEDEE ENSP00000299853/1-708 IQVAKTKAQQ NHALLERELQ RRKEQLRVPA VPPGVRIKEE PVSEEGEEDE bmy_12038T0/1-752 VQVAKRQAQQ NHALLERELQ RRKEQLRAAS VLPGVRIKEE PVSEEGEEEE BACU013835/1-823 VQVAKRQAQQ NHALLERELQ RRKEQLRAAS VLPGVRIKEE PVSEEGEEEE 651 700 ENSTTRP00000009980/1-690 ERGAED-EQP MDTSPGGGLH SRLANGLPAA RAAGGDSFNG HPPSGSAGTP ENSBTAP00000043258/1-711 EREAEDEEEP MDTSPGGGLH GGLANGLPAG RAAGGDSFNG HPPSGSASTP ENSP00000299853/1-708 EQEAE--EEP MDTSPS-GLH SKLANGLPLG RAAGTDSFNG HPPQGCASTP bmy_12038T0/1-752 ERGAEEAEEP MDTSPSGGLH GRLANGLPAG RAAGGDGFIG HPPSGSAGTP BACU013835/1-823 ERGAEEAEEP MDTSPSGGLH GRLANRLPAG RAAGGDGFNG HPPSGSAGTP 701 750 ENSTTRP00000009980/1-690 VARELRAFVE ATFQRQFVLT LSELKRLFNL HLASLPPGHM LFSGISDRML ENSBTAP00000043258/1-711 VARELRAFVQ ATFQKQFVLT LSELKRLFNL HLASLPPGHM LFSGISDRML ENSP00000299853/1-708 VARELKAFVE ATFQRQFVLT LSELKRLFNL HLASLPPGHT LFSGISDRML bmy_12038T0/1-752 VARELRAFVE ATFQRQFVLT LSELKRLFNL HLASLPPGHM LFSGISDRML BACU013835/1-823 VARELRAFVE ATFQRQFVLT LSELKRLFNL HLASLPPGHM LFSGISDRML 751 800 ENSTTRP00000009980/1-690 QDTVLAAGCK QILVPFPPQT AASPDEQKVF ALWESGDMSD Q--------- ENSBTAP00000043258/1-711 QDTVLAAGCK QILVPFPPQT AASPDEQKVF ALWESGDISD Q--------- ENSP00000299853/1-708 QDTVLAAGCK QILVPFPPQT AASPDEQKVF ALWESGDMSD Q--------- bmy_12038T0/1-752 QDTVLAAGCK QILVPFPPQT AASPDEQKVF ALWESGDMSD QVIVSHNNMF BACU013835/1-823 QDTVLAAGCK QILVPFPPQT AASPDEQKVF ALWESGDMSD QVIVSHNNMF 801 850 ENSTTRP00000009980/1-690 ----HRQVLL EIFSKNYRVR RNMIQSRLTQ ECGEDLSKQE VDKVLK---- ENSBTAP00000043258/1-711 ----HRQVLL EIFSKNYRVR RNMIQARLTQ ECGEDLSKQE VDKVLKDCCV ENSP00000299853/1-708 ----HRQVLL EIFSKNYRVR RNMIQSRLTQ ECGEDLSKQE VDKVLKDCCV bmy_12038T0/1-752 LLLKHRQVLL EIFSKNYRVR RNMIQSRLTQ ECGEDLSKQE LDKVLKDCCV BACU013835/1-823 LLLKHRQVLL EIFSKNYRVR RNMIQSRLTQ ECGEDLSKQE LDKVLKDCCV 851 900 ENSTTRP00000009980/1-690 ---------- ---- ENSBTAP00000043258/1-711 SYGGMWYLKG TVQS ENSP00000299853/1-708 SYGGMWYLKG TVQS bmy_12038T0/1-752 SYGGMWYLKG TVQS BACU013835/1-823 SYGGMWYLKG TVQS