KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:54:33 2014 Check: 00 .. Name: ENSP00000380920/1-230 Len: 231 Check: 9843 Weight: 1.00 Name: ENSTTRP00000015778/1-182 Len: 231 Check: 3891 Weight: 1.00 Name: bmy_13732T0/1-199 Len: 231 Check: 595 Weight: 1.00 Name: ENSBTAP00000043279/1-225 Len: 231 Check: 4126 Weight: 1.00 // 1 50 ENSP00000380920/1-230 MPWTILLFAA GSLAIPAPSI RLVPPYPSSQ EDPIHIACMA PGNFPGANFT ENSTTRP00000015778/1-182 MPWTVLLFAA XXXXXXXXXX XXXXXXXXXX XXXXHIACMA PRDFPGTNFT bmy_13732T0/1-199 ---------- ---------- MLVPPHPSSQ EDPIHISCMA PRDFPGANFT ENSBTAP00000043279/1-225 MPWIVLLFAA GSLAIPAPSI MLVPPHPSSK EDPIHISCMA PRGFPGANFT 51 100 ENSP00000380920/1-230 LYRGGQVVQL LQAPTDQRGV TFNLSGGSSK APGGPFHCQY GVLGELNQSQ ENSTTRP00000015778/1-182 LYQGR--VVQ LQAPVDQLEV IFN-SGGSRE VPGGPFRCQY GVLGELRQ-Q bmy_13732T0/1-199 LYQGKEVVQL LQAPADQLEV IFNLSGGSRE VPGGPFCCQY GVLGEHRQPQ ENSBTAP00000043279/1-225 LYQDGEVVEL LKAPKDQLRV IFNLSGGSRE VRGGPFCCQY SVLGENRQPQ 101 150 ENSP00000380920/1-230 LSDLSEPVNV SFPVPTWILV LSLSLAGALF LLAGLVAVAL VVRKVKLRNL ENSTTRP00000015778/1-182 LSNLSEPMHV SFPVPTWILA LSLSLAGAFL LLAGLVTTAL VVRKVKVKNL bmy_13732T0/1-199 LSNLT----- ----PTWILA LSLSLAGSFL LLAGLVTTAL VIRKVKVKNL ENSBTAP00000043279/1-225 LSNLSEPVHV SFPVPTWILA LSLSLAGAAL LLAGLVIIAL IIRKVKVKNL 151 200 ENSP00000380920/1-230 QKKRDRESCW AQINFDSTDM SFDNSLFTV- SAKTMPEEDP ATLDDHSGTT ENSTTRP00000015778/1-182 QKKRERESCW AQVNFATTDM -FDNSLFTI- ---------- ---------- bmy_13732T0/1-199 QKXRERESCW AQVDFATTDM SFDNSLFTI- -SKMTSEEDA ATQDAPSGSA ENSBTAP00000043279/1-225 NKRRERESCW --VNIATTDM SFDNSLFTIM TKKMTSEEDA ANLDAPSGST 201 250 ENSP00000380920/1-230 ATPSNSRTRK RPTSTSSSPE TPEFSTFRAC Q ENSTTRP00000015778/1-182 ---------- --SAASSSPA ---------- - bmy_13732T0/1-199 VTPGNSGTRK RPTSTSSSPE PPEFSTFRAC - ENSBTAP00000043279/1-225 ETPG---PRK RPTSTSSSPE PPEFSTFRAC -