KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:54:33 2014 Check: 00 .. Name: ENSTTRP00000000431/1-923 Len: 1088 Check: 128 Weight: 1.00 Name: ENSP00000305702/1-926 Len: 1088 Check: 2788 Weight: 1.00 Name: ENSBTAP00000043298/1-927 Len: 1088 Check: 5181 Weight: 1.00 Name: bmy_05269T0/1-972 Len: 1088 Check: 2980 Weight: 1.00 Name: BACU018102/1-819 Len: 1088 Check: 3050 Weight: 1.00 // 1 50 ENSTTRP00000000431/1-923 ---------- ---------M EEPGMPHESA ED----LFHF NVGGWHFSVP ENSP00000305702/1-926 ---------- ---------M EESGMAHESA ED----LFHF NVGGWHFSVP ENSBTAP00000043298/1-927 ---------- ---------M EEPGMPHESA ED----LFHF NVGGWHFSVP bmy_05269T0/1-972 MDQRNRQVLE VKTGRREGLI KEHPFPFHPN QEKPSRVTRL LSLNFSPSAP BACU018102/1-819 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000000431/1-923 RSKLAQFPDS LLWKEASA-L TSSESQRLFI DR-------- ---------- ENSP00000305702/1-926 RSKLSQFPDS LLWKEASA-L TSSESQRLFI DR-------- ---------- ENSBTAP00000043298/1-927 RSKLAQFPDS LLWKEASA-L TSSENQRLFI DR-------- ---------- bmy_05269T0/1-972 NSPVTSVPSP LLHCNPSASV TPPPPQRPLL RRRSPPSTSG SSASPSVFSP BACU018102/1-819 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000000431/1-923 ---------- ---------- ---------- ---------- ---------- ENSP00000305702/1-926 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000043298/1-927 ---------- ---------- ---------- ---------- ---------- bmy_05269T0/1-972 QPLTPSSRSR HSRPGPTGLL QGQRPQAADA LLVQLPLLRH SRPPAPLRRS BACU018102/1-819 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000000431/1-923 ---------- ---------- --------DG STFRHVHYYL YT-------- ENSP00000305702/1-926 ---------- ---------- --------DG STFRHVHYYL YT-------- ENSBTAP00000043298/1-927 ---------- ---------- --------DG STFRHVHYYL YT-------- bmy_05269T0/1-972 PVTAREAARR APSPAPTPPG PAPRVAALPG AVIARVTLLL TRLRTLDHGM BACU018102/1-819 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000000431/1-923 ---------- ---------S KLSFSSCAEL NLLYEQALAL QLMPLLQ--- ENSP00000305702/1-926 ---------- ---------S KLSFSSCAEL NLLYEQALGL QLMPLLQ--- ENSBTAP00000043298/1-927 ---------- ---------S KLSFSSCAEL NLLYEQALGL QLMPLLQ--- bmy_05269T0/1-972 EPALAGAPKP LKQRMGAMWR RIRAVGCAEL NLLYEQALGL QLMPLLQICQ BACU018102/1-819 ---------- ---------- ---------- ---------- --MPLLQ--- 251 300 ENSTTRP00000000431/1-923 ---------- -TLDNLKEGK YHLRVRPADI PVAERASLNY WRTWKCISKP ENSP00000305702/1-926 ---------- -TLDNLKEGK HHLRVRPADL PVAERASLNY WRTWKCISKP ENSBTAP00000043298/1-927 ---------- -TLDNLKEGK HHLRVRPADI PVAERASLNY WRTWKCISKP bmy_05269T0/1-972 THLFWGKMFT KTLDNLKEGK HHLRVRPADI PVAERASLNY WRTWKCISKP BACU018102/1-819 ---------- -TLDNLKEGK HHLRVRPADI PVAERASLNY WRTWKCISKP 301 350 ENSTTRP00000000431/1-923 SEFPIKSPAF TGLHDKAPLG LMDTPLLDTE EDVHYCFLPL DLVAKYPSLV ENSP00000305702/1-926 SEFPIKSPAF TGLHDKAPLG LMDTPLLDTE EEVHYCFLPL DLVAKYPSLV ENSBTAP00000043298/1-927 SEFPIKSPAF TGLHDKAPLG LMDTPLLDTE EEVHYCFLPL DLVAKHPSLV bmy_05269T0/1-972 SEFPIKSPAF TGLHDKAPLG LMDTPLLDTE EEVHYCFLPL DLVAKYPSLV BACU018102/1-819 SEFPIKSPAF TGLHDKAPLG LMDTPLLDTE EEVHYCFLPL DLVAKYPSLV 351 400 ENSTTRP00000000431/1-923 TEDNLLWLAK TVALIECECS EXXXXXNFLR SQKILLPDNF SNIDVLEAEV ENSP00000305702/1-926 TEDNLLWLAE TVALIECECS EFRFIVNFLR SQKILLPDNF SNIDVLEAEV ENSBTAP00000043298/1-927 TEDNLLWLAE TMALIECECS EFRFIVNFLR SQKILLPDNF SNIDVLEAEV bmy_05269T0/1-972 TEDNLLWLAK TVALIECECS EFRFIVNFLR SQKILLPDNF SNIDVLEAEV BACU018102/1-819 TEDNLLWLAK TVALIECECS EFRFIVNFLR SQKILLPDNF SNIDVLEAEV 401 450 ENSTTRP00000000431/1-923 EILEIPELSE AVRLYRMNMG GCSRTSCPPP SPGKGGRAAG LESVKPLYMM ENSP00000305702/1-926 EILEIPALTE AVRWYRMNMG GCSPTTCSPL SPGKGARTAS LESVKPLYTM ENSBTAP00000043298/1-927 EILEIPELSE AVRLYRMNMG GCSRTSCPPP SPGKGGRSAG LESVKPLYMM bmy_05269T0/1-972 EILEIPELSE AVRLYRMNTG GCSRTSCPPP SPGKGSRAAG LESVKPLYVM BACU018102/1-819 EILEIPELSE AVRLYRMNTG GCSRTSCPPP SPGKGGRAAG LESVKPLYVM 451 500 ENSTTRP00000000431/1-923 TLGLLVKYPD SALGQLRIES TLDGSRLYIT GNGVLFQHVK NWLGTCQLPL ENSP00000305702/1-926 ALGLLVKYPD SALGQLRIES TLDGSRLYIT GNGVLFQHVK NWLGTCRLPL ENSBTAP00000043298/1-927 ALGLLVKYPD SALGQLRIES TLDGSRLYIT GNGVLFQHVK NWLGTCRLPL bmy_05269T0/1-972 ALGLLVKYPD SALGQLRIES TLDGSRLYIT GNGVLFQHVK NWLGTCRLPL BACU018102/1-819 ALGLLVKYPD SALGQLRIES TLDGSRLYIT GNGVLFQHVK NWLGTCWLPL 501 550 ENSTTRP00000000431/1-923 TETISEVYEL CAFLDKRDIT YEPMKVALKT HLEPRTLAPM DVLNEEWTAE ENSP00000305702/1-926 TETISEVYEL CAFLDKRDIT YEPIKVALKT HLEPRTLAPM DVLN-EWTAE ENSBTAP00000043298/1-927 TETVSEVYEL CAFLDKRDIT YEPMKVALKT HLEPRTLAPM DVLNEEWTAE bmy_05269T0/1-972 TETISEVYEL CAFLDKRDIT YEPMKVALKT HLEPRTLAPM DVLNEEWMAE BACU018102/1-819 TETISEVYEL CAFLDKRDIT YEPMKVALKT HLEPRTLAPM DVLNEEWMAE 551 600 ENSTTRP00000000431/1-923 ITVYSPQQIV KVYVGSHWYA TTLQTLLKYP ELLSNPQRVY WITYGQTLLI ENSP00000305702/1-926 ITVYSPQQII KVYVGSHWYA TTLQTLLKYP ELLSNPQRVY WITYGQTLLI ENSBTAP00000043298/1-927 ITVYSSQQII KVYVGSHWYA TTLQTLLKYP ELLSNPQRVY WITYGQTLLI bmy_05269T0/1-972 ITVYSPQQIV KVYVGSHWYA TTLQTLLKYP ELLSNPQRVY WITYGQTLLI BACU018102/1-819 ITVYSPQQIV KVYVGSHWYA TTLQTLLKYP ELLSNPQRVY WITYGQTLLI 601 650 ENSTTRP00000000431/1-923 HGDGQMFRHI LNFLRLGKLF LPSEFKEWPL LCQEVEEYHI PSLSEALIQC ENSP00000305702/1-926 HGDGQMFRHI LNFLRLGKLF LPSEFKEWPL FCQEVEEYHI PSLSEALAQC ENSBTAP00000043298/1-927 YGDGQMFRHI LNFLRLGKLF LPTEFKEWPL LCQEVEEYHI PSLSEALVQC bmy_05269T0/1-972 HGDGQMFRHI LNFLRLGKLF LPSEFKEWPL LCQEVEEYHI PSLSEALIQC BACU018102/1-819 HGDGQMFRHI LNFLRLGKLF LPSEFKEWPL LCQEVEEYHI PSLSEALIQC 651 700 ENSTTRP00000000431/1-923 EAYKSWIQEK ESGN-EVFPI RRLHVVTEGP GSLVEFSRDA KETTACIPME ENSP00000305702/1-926 EAYKSWTQEK ESENEEAFSI RRLHVVTEGP GSLVEFSRDT KETTAYMPVD ENSBTAP00000043298/1-927 EAYKSWIQEK ESENEEAFPI RRLHVVTEGP GSLVEFSRDT KETMACVPME bmy_05269T0/1-972 EAYKSWIQEK ESGNEEVFPI RRLHVVTEGP GSLVEFSRDA KETTACMPME BACU018102/1-819 EAYKSWIQEK ESGNEEVFPI RRLHVVTEGP GSLVEFSRDA KETTACMPME 701 750 ENSTTRP00000000431/1-923 FQDCSDRTPR NKAKGTLARS SQIEEAEQYF RTIQVSLCRG AKRAGNPSTY ENSP00000305702/1-926 FEDCSDRTPW NKAKGNLVRS NQMDEAEQYT RPIQVSLCRN AKRAGNPSTY ENSBTAP00000043298/1-927 FQDCNDRTMW NKAKGTLARS SQIEEAEQYS QTIQMSLCRG AKRAGNPSTY bmy_05269T0/1-972 FQDCNDRTPR NKAKGSLA-- ---------- ---------- ---------- BACU018102/1-819 FQDCNDRTPR NKAEGTLARS SQIEEAEQYF RIIQVSLCRG AKRAGNPSTY 751 800 ENSTTRP00000000431/1-923 SHCPGLCANP RHWGAHPESP PKKKCTTVNL TQKSESKDPP VTPMQKLISL ENSP00000305702/1-926 SHCRGLCTNP GHWGSHPESP PKKKCTTINL TQKSETKDPP ATPMQKLISL ENSBTAP00000043298/1-927 SHCPGLCANP RHWGGHPESP PKKKCTTVNL TQKPETKDPP VTPMQKLISL bmy_05269T0/1-972 ---------- ---------- ---------- ---------- ---------- BACU018102/1-819 SHCPGLCANP RHWGAHPESP PKKKCTTVNL TQKSESKDPP VTPMQKLISL 801 850 ENSTTRP00000000431/1-923 VREWDMVNC- QWEFQPLPGS SSSL--EATL KLXXXXXXXX XXXXXXXXXX ENSP00000305702/1-926 VREWDMVNCK QWEFQPLTAT RSSPLEEATL QLPLGSEAAS QPSTSAAWKA ENSBTAP00000043298/1-927 VREWDMVNCK QWEFQSLPAP RNSSLEEATL QHSSGSEAVS QPSTSASWKG bmy_05269T0/1-972 -REWDMVNCK QWEFQPLPAS RSSSLEEATL QLPSGSEAVS QPSTSASWKG BACU018102/1-819 VREWDMVNCK QWEFQPLPAP RSSSLEEATL QLPSGSEAVS QPSTSASWKG 851 900 ENSTTRP00000000431/1-923 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000305702/1-926 HSTASEKDPG PQAGAGAGAK DKGPEPTFKP YLPPKRAGTL KDWSKQRTKE ENSBTAP00000043298/1-927 HSTASEKDPG PQAGAGAGTK DKGPEPNFNP YFPMKRAVAL KDWGKQRSKE bmy_05269T0/1-972 HYTASEKDPG PQAGAGAGTK DKGPEPTFKP YFPMKRA--- ---------- BACU018102/1-819 HYTASEKDPG PQAGAGAGTK DKGPEPTFKP YFPMKRAVTL KDWGKQRPKE 901 950 ENSTTRP00000000431/1-923 XXSPAPEQSV PEASEVDSKG VILKVTHPPV VGSDGSCMFF EDSIIYTTQM ENSP00000305702/1-926 RESPAPEQPL PEASEVDSLG VILKVTHPPV VGSDGFCMFF EDSIIYTTEM ENSBTAP00000043298/1-927 RENPAFELTL PEASEGDNTG VILKVTHPPV VGSDGSCMFF EDSIIYTTHM bmy_05269T0/1-972 --------SL PEASEVDSTG VILKVTHPPV VGSDGSCMFF EDSIIYTTQM BACU018102/1-819 RESPAPEQSL PEASEVDSTG VILKVTHPPV VGSDGSCMFF EDSIIYTTQM 951 1000 ENSTTRP00000000431/1-923 DNLTHMPPTA SPQPREVTFL SFSLSWEEMF YAQKCHCFLT DIILDSIRQK ENSP00000305702/1-926 DNLRHTTPTA SPQPQEVTFL SFSLSWEEMF YAQKCHCFLA DIIMDSIRQK ENSBTAP00000043298/1-927 DHLRRTPPPA SPQPREVTFL SFSLSWEEMF YAQKCHCFLT DIILDSIRQN bmy_05269T0/1-972 DNLRHMLPTA SPQPR----- -------EMF YAQKCHRFLT DIILDSIRQK BACU018102/1-819 DNLRHMPPTA SPQPREVTFL SFSLSWEEMF YAQKCHRFLT DIILDSIRQK 1001 1050 ENSTTRP00000000431/1-923 DPKAITAKVV SLANRLWTLN ISPKQFVVDL LAITGFKDDR YTQEHLYSWV ENSP00000305702/1-926 DPKAITAKVV SLANRLWTLH ISPKQFVVDL LAITGFKDDR HTQERLYSWV ENSBTAP00000043298/1-927 DPKAITAKVV SLVNQLWTLH ISPKQFVVDL LAITGFKDDR HTQERLYSWV bmy_05269T0/1-972 DPKAITAKVV SLANRLWTLN ISPKQFVVDL LAVTGFKDDR YTQEHLYSWV BACU018102/1-819 DPKAITAKVV SLANRLWTLN ISPKQFVVDL LAITGFKDDR YTQEHLYSWV 1051 1100 ENSTTRP00000000431/1-923 ELTLPFARKY GRCVDLLIQR GLSRSVSYSL LSKYLQDG ENSP00000305702/1-926 ELTLPFARKY GRCMDLLIQR GLSRSVSYSI LGKYLQED ENSBTAP00000043298/1-927 ELTLPFARKY GRCVDLLIQR GLSKSVSYSV LSKYLQDG bmy_05269T0/1-972 ELTLPFARKY GHCVDLLIQR GLSRSVSYSL LSKYLQDG BACU018102/1-819 EVR------- ATCTPLGMAN PPDASDGHCL AA------