KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:54:36 2014 Check: 00 .. Name: ENSP00000460548/1-640 Len: 1144 Check: 2353 Weight: 1.00 Name: ENSBTAP00000043345/1-643 Len: 1144 Check: 1271 Weight: 1.00 Name: bmy_06292T0/1-588 Len: 1144 Check: 1852 Weight: 1.00 Name: BACU012910/1-1096 Len: 1144 Check: 6235 Weight: 1.00 Name: ENSTTRP00000001333/1-657 Len: 1144 Check: 5610 Weight: 1.00 // 1 50 ENSP00000460548/1-640 ---MGQPSLT WMLMVVVASW FITTAATDTS EAR------- --------WC ENSBTAP00000043345/1-643 MKCLFSPNFM WM-AAVVTSW VIIPAATDTS LAK------- --------SC bmy_06292T0/1-588 MKWFFSSTLM WM-AVVVTSW VIIAAASDTS AAR------- --------SC BACU012910/1-1096 ---------- ---------- ---------- ---------- --------SC ENSTTRP00000001333/1-657 MKWLFSSTLM WM-VVVVTSW VVIAAVSDTS AARTKCDCPA RRGQGDLRSC 51 100 ENSP00000460548/1-640 SECHSNATCT EDEAVTTCTC QEGFTGDGLT CVDLDECAIP GAHNCSANSS ENSBTAP00000043345/1-643 SECHSNATCT VDGAATTCAC QEGFTGDGLE CVDLDECAVL GAHNCSATKS bmy_06292T0/1-588 SECHSNATCT EDGAATTCSC QTGFTGDGLE CEDLDECATP GTHNCSAPSS BACU012910/1-1096 SECHSNATCT EDGAATTCSC QAGFTGDGLE CEDLDECATP GTHNCSAPSS ENSTTRP00000001333/1-657 SECHSNATCS EDGAATTCSC QAGFTGDGLE CEDLDECATP GTHNCSAPSS 101 150 ENSP00000460548/1-640 CVNTPGSFSC VCPEGFRLSP GLGCTDVDEC AEPGLSHCHA LATCVNVVGS ENSBTAP00000043345/1-643 CVNTLGSYTC VCPEGFLLSS ELGCEDVDEC AEPGLSRCHA LATCINGEGN bmy_06292T0/1-588 CVNTPGSYTC VCPEGFRLSS ELGCTDVDEC AEPGLSHCHA LATCVNSEGN BACU012910/1-1096 CVNTPGSYTC VCPEGFRLSS ELGCTDVDEC AEPGLSHCHA LATCVNSEGN ENSTTRP00000001333/1-657 CVNAPGSYTC VCPEGFRLSS ELGCTDVDEC AEPGLSHCHT LASCVNSEGN 151 200 ENSP00000460548/1-640 YLCVCPAGYR GDGWHCECSP GSCGPGLDCV PEGDALVCAD PCQAHRTLDE ENSBTAP00000043345/1-643 YSCVCPAGYL GDGRHCECSP GSCGPGLDCV REGDALVCVD PCQVHRILDE bmy_06292T0/1-588 YSCVCPAGYW GDGRHCECSP GSCGPGLDCV HXGDTLVCAD PCQVHRILDE BACU012910/1-1096 YSCVCPAGYW GDGRHCECSP GSCGPGLDCV HEGDRLVCAD PCQAHRILDE ENSTTRP00000001333/1-657 YSCVCPAGYW GDGRHCECSP GSCGPGLDCV HEGDTLVCAD PCQAHRILDE 201 250 ENSP00000460548/1-640 YWRSTEYGEG YACDTDLRGW YRFVGQGGAR MAETCVPVLR CNTAAPMWLN ENSBTAP00000043345/1-643 YWRSTEYGSG YICDVSLGGW YRFVGQAGVR LPETCVPVLH CNTAAPMWLN bmy_06292T0/1-588 YWRSAQYGAG YACDSDVAGW YRFVGLGGVR LAETCVPVLR CNTAAPMWLN BACU012910/1-1096 YWRSAQYGAG YACDSAVAGW YRFVGQGGVR LAETCVPVLR CNTAAPMWLN ENSTTRP00000001333/1-657 YWRSAQYGAG YACDSDVAGW YRFVGQGGVR LAETCVPVLR CNTAAPMWLN 251 300 ENSP00000460548/1-640 GTHPSSDEGI VSRKACAHWS GHCCLWDASV QVKACAGGYY VYNLTAPPEC ENSBTAP00000043345/1-643 GTHPSSDEGI VNRVACAHWS GDCCLWDAPI QVKACAGGYY VYNLTAPPEC bmy_06292T0/1-588 GTHPSSGEGI VSRRACAHWS GHCCLWDTPV QVKACAGGYY VYNLTAPPEC BACU012910/1-1096 GTHPSSSDGI VSLRACAHWS GHCCLWDTPV QVKACAGGYY VYNLTAPPEC ENSTTRP00000001333/1-657 GTHPSSSEGI VSRRACAHWS GHCCLWDTLV QVKACAGGYY VYNLTAPPEC 301 350 ENSP00000460548/1-640 HLAYCTDPSS VEGTCEECSI DEDCKSNNGR WHCQCKQDFN ITDISLLEHR ENSBTAP00000043345/1-643 HLAYCTDPSS VEGTCEECRV DEDCKSDNGE WHCQCKQDFN VTDLSLLERR bmy_06292T0/1-588 HLAYCTDPGS VEGTCEECSV DEDCKSDNGR WHCQCKQDLS ITDLSLLERR BACU012910/1-1096 HLAYCTDPGS VEGTCEECSV DEDCKSDNGR WHCQCKQDLS ITDLSLLERR ENSTTRP00000001333/1-657 HLAYCTDPGS VEGTCEECSV DEDCKSDNGR WHCQCKQDLS ITDLSLLERR 351 400 ENSP00000460548/1-640 LECGANDMKV SLGKCQLKSL GFDKVFMYLS DSRCSGFNDR DNRDWVSVVT ENSBTAP00000043345/1-643 LECGVDDIKL SLSKCQLKSL GFEKVFMYLH DSQCSGFTER GDRDWMSVVT bmy_06292T0/1-588 LECGVSDIKL SLGKCQLKSL GFEKVFMYLR DSQCSGFTER GDRDWMSVVT BACU012910/1-1096 LECGVNDIKL SLGKCQLKSL GFEKVFMYLR DSQCSGFIER GDRDWMSVVT ENSTTRP00000001333/1-657 LECGVNDIKL SLGKCQVQSL GFEKVFMYLR DSQCSGFTER GDRDWMSVVT 401 450 ENSP00000460548/1-640 PARDGPCGTV LTRNETHATY SNTLYLADEI IIRDLNIKIN FACSYPLDMK ENSBTAP00000043345/1-643 PARDGPCGTV MTRNETHATY SNTLYLADEI IISDLNIRIN FACSYPLDMK bmy_06292T0/1-588 PARDGPCGTV MTRNETHATY SNTLYLADEL IIRDRNIKIN FACSYPLDMK BACU012910/1-1096 PARDGPCGTV MTRNETHATY SNTLYLADEL IIRDRNIKIN FACSYPLDMK ENSTTRP00000001333/1-657 PARDGPCGTV MTRNETHATY SNTLYLADEL IIRDRNIKIN FACSYPLDMK 451 500 ENSP00000460548/1-640 VSLKTALQPM VSALNIRVGG TGMFTVRMAL FQTPSYTQPY QGSSVTLSTE ENSBTAP00000043345/1-643 VSLKTSLQPM VSALNISMGG TGTFTVRMAL FQSPAYTQPY QGSSVTLSTE bmy_06292T0/1-588 VSLKTSLQPM R--------- ---------- ---PKHQHGW DRNV------ BACU012910/1-1096 VSLKTSLQPM VSALNISMGG TGTFTVWMAL FQSPAYVQPY QGSSVTLSTE ENSTTRP00000001333/1-657 VSLKTSLQPM VSALNISMGG TGTFTVWMAL FQSPAYVQPY QGSSVTLSTE 501 550 ENSP00000460548/1-640 AFLYVGTMLD GGDLSRFALL MTNCYATPSS NATDPLKYFI IQDRCPHTRD ENSBTAP00000043345/1-643 AFLYVGTMLD GGDLSRFVLL MTNCYATPSS NATDPLKYFI IQDRCPRAAD bmy_06292T0/1-588 ------HRVD G--------- -----ALPEP YLHTALPRLL ---RDPVHRG BACU012910/1-1096 AFLYVGAMLD GGDLSRFALL MTNCYATPSS NATDPLKYFI IQDRCPRTAD ENSTTRP00000001333/1-657 AFLYVGTMLD GGDLSRFALL MTNCYATPSS NATDPLKYFI IQDRCPLTED 551 600 ENSP00000460548/1-640 STIQVVENGE SSQGRFSVQM FRFAGNYDLV YLHCEVYLCD TMNEKCKPTC ENSBTAP00000043345/1-643 STIQVEENGE SPQGRFSVQM FRFAGNYDLV YLHCEVYLCD TVNEKCRPTC bmy_06292T0/1-588 LSLCGHHAG- --WGRL-VPI FRFAGNYDLV YLHCEVYLCD TVNEKCKPTC BACU012910/1-1096 STIQVEENGE SPQGRFSVQM FRFAGNYDLV YLHCEVYLCD TVNEKCKPTC ENSTTRP00000001333/1-657 STIQVEENGE SPQGRFSVQM FRFAGNYDLV YLHCEVYLCD TVNEKCKPTC 601 650 ENSP00000460548/1-640 SGTRFRSGSV IDQSRVLNLG PITRKGVQAT VSRAF-SSLG ---------- ENSBTAP00000043345/1-643 PETRFRSGSI IDQTRVLNLG PITRKGGQAA MSRAAPSSLG ---------- bmy_06292T0/1-588 SETRFRSGGI IDQTHVLNLG PITRKGSQAA VSRAASSSLG ---------- BACU012910/1-1096 SETKFRSGGI IDQTHVLNLG PITRKGSQAA VSRAASSSLG YRNPTSASSY ENSTTRP00000001333/1-657 SETRFRRGGF IDQTRVLNLG PITRKXXXXX XXXXXXXXX- ---------- 651 700 ENSP00000460548/1-640 ---------- ---------- -----LLK-- ---------- ---------- ENSBTAP00000043345/1-643 ---------- ---------- -----LLQ-- ---------- ---------- bmy_06292T0/1-588 ---------- ---------- -----LLK-- ---------- ---------- BACU012910/1-1096 EQDLECGAPG TPEAQLCFDP CQNYTLLDEP SRSTENAGQA ESCDGDKHGW ENSTTRP00000001333/1-657 ---------- ---------- -----LLK-- ---------- ---------- 701 750 ENSP00000460548/1-640 ---------- ---------- ------VWL- ---------- ---------- ENSBTAP00000043345/1-643 ---------- ---------- ------VWL- ---------- ---------- bmy_06292T0/1-588 ---------- ---------- ------VWL- ---------- ---------- BACU012910/1-1096 YRFVGDGGVR MAEDCVAVYR CQTAAPMWLN GAHPTLGQGI VSRTACAHWS ENSTTRP00000001333/1-657 ---------- ---------- ------VWL- ---------- ---------- 751 800 ENSP00000460548/1-640 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000043345/1-643 ---------- ---------- ---------- ---------- ---------- bmy_06292T0/1-588 ---------- ---------- ---------- ---------- ---------- BACU012910/1-1096 DNCCLWKTEV LVKACPGQYH VYRLEGTPQC NLRYCTDPTT TVDNCERTCR ENSTTRP00000001333/1-657 ---------- ---------- ---------- ---------- ---------- 801 850 ENSP00000460548/1-640 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000043345/1-643 ---------- ---------- ---------- ---------- ---------- bmy_06292T0/1-588 ---------- ---------- ---------- ---------- ---------- BACU012910/1-1096 PNEECRFVND TWDCFCRQDL NISDVHSLQP QLDCGAKEIK VSLDKCLLGG ENSTTRP00000001333/1-657 ---------- ---------- ---------- ---------- ---------- 851 900 ENSP00000460548/1-640 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000043345/1-643 ---------- ---------- ---------- ---------- ---------- bmy_06292T0/1-588 ---------- ---------- ---------- ---------- ---------- BACU012910/1-1096 LGFGDEVHAY LQDRNRNCSS MMQREGKNWI LVTSPTQAGA CGNILERNQT ENSTTRP00000001333/1-657 ---------- ---------- ---------- ---------- ---------- 901 950 ENSP00000460548/1-640 ---------- ---------- ---------P LLLSATLTLT FQ-------- ENSBTAP00000043345/1-643 ---------- ---------- ---------P LLLSATLTLM SP-------- bmy_06292T0/1-588 ---------- ---------- ---------P LLLSATLTLM SQ-------- BACU012910/1-1096 HAIYKNTLSL VNDFIIRDII LSINFQCAYP LDMKVSLQTA LQPIVSSLNI ENSTTRP00000001333/1-657 ---------- ---------- ---------P LLLSATLTQM SQ-------- 951 1000 ENSP00000460548/1-640 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000043345/1-643 ---------- ---------- ---------- ---------- ---------- bmy_06292T0/1-588 ---------- ---------- ---------- ---------- ---------- BACU012910/1-1096 SVDGEGEFTV RMALFQDQNY TSPYEGAAVV LSVESMLYVG AVLERGDTSR ENSTTRP00000001333/1-657 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSP00000460548/1-640 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000043345/1-643 ---------- ---------- ---------- ---------- ---------- bmy_06292T0/1-588 ---------- ---------- ---------- ---------- ---------- BACU012910/1-1096 FNLVLRNCYA TPTGDMNDPV RYFIIKNSCP NKRDSTIYVE ENGVSSESRF ENSTTRP00000001333/1-657 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSP00000460548/1-640 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000043345/1-643 ---------- ---------- ---------- ---------- ---------- bmy_06292T0/1-588 ---------- ---------- ---------- ---------- ---------- BACU012910/1-1096 SVQMFMFAGN YDLVFLHCEI SLCDSLKEQC QPSCSRSQLR SEGVAIDPAR ENSTTRP00000001333/1-657 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSP00000460548/1-640 ---------- ---------- ---------- ---------- ---- ENSBTAP00000043345/1-643 ---------- ---------- ---------- ---------- ---- bmy_06292T0/1-588 ---------- ---------- ---------- ---------- ---- BACU012910/1-1096 VLDLGPITRR GAPSLGVMSG ATSTAGTSFS PAFPTALPPN SPSF ENSTTRP00000001333/1-657 ---------- ---------- ---------- ---------- ----