KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:54:37 2014 Check: 00 .. Name: ENSTTRP00000009760/1-220 Len: 663 Check: 8992 Weight: 1.00 Name: ENSBTAP00000043349/1-495 Len: 663 Check: 5615 Weight: 1.00 Name: bmy_05274T0/1-657 Len: 663 Check: 8544 Weight: 1.00 Name: ENSP00000388531/1-180 Len: 663 Check: 594 Weight: 1.00 // 1 50 ENSTTRP00000009760/1-220 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000043349/1-495 -----ARGRR RQGCDGGVAA AGD------- ---------- --GHIYSELP bmy_05274T0/1-657 MKSTEYYQDH QVRCTVGIEA QGLESWEEGL LWTEVEMKVM MLTYILSFLP ENSP00000388531/1-180 ---------- ---MAESLPL EML------- ---------- --TYILSFLP 51 100 ENSTTRP00000009760/1-220 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000043349/1-495 ASVRSERGLP REPGLVLCSP DCPS------ ---------- ---------- bmy_05274T0/1-657 LSDQKEASLV SRAWCCAAQN ALREMPALGR EEPRGLVGPS VMGRLKLEQA ENSP00000388531/1-180 LSDQKEASLV SWAWYRAAQN ALRE------ ---------- ---------- 101 150 ENSTTRP00000009760/1-220 ---------- ---------- -----ILSPK GPAGAAEPRH ---------- ENSBTAP00000043349/1-495 ---------- ---GAIKSLG LRGITCISLT NLDGSPASLQ VLRSVTHHLG bmy_05274T0/1-657 NVRYNIPVSS ASLPTIKSLG LRGICCISLT NLDGSPASHQ VLQSVAYHLG ENSP00000388531/1-180 ---------- -------SLG LRGICCISLT NLDGSLASHQ VLQSVAYHLG 151 200 ENSTTRP00000009760/1-220 ---------G RGRESAQALG LVCGAPHPLA SLSLAYCSSL KPPRELHRAS ENSBTAP00000043349/1-495 PHLQSLCLGG GSPTEASFVA LILGCP-ALR ILDLSGCNSL -----FTSGM bmy_05274T0/1-657 LYLQSLCLGG GSPTEASFVA LILGCP-ALR FLDLSGCNSL -----FTSGM ENSP00000388531/1-180 PHLQSLSLGG GSPTEASSVA LILGCP-ALC VLDLSGCNSL -----FTSGT 201 250 ENSTTRP00000009760/1-220 SRKDPSPWPP ALLTLQALRD LDLTACSKLT DASLT----- ---------- ENSBTAP00000043349/1-495 LLAQPETAQQ VQQALSGLRE LSLASLRDLA DLSFNRLSSC APCLERLSLA bmy_05274T0/1-657 LLAQPKTAQR VQQALSGLRE LNLASLQDLT NLSFNRLSSC VPSLERLALA ENSP00000388531/1-180 LLAQPEMAQS VQQALSGLRE LNLAGLRDLA DLSFNQLSSC APSLERLSLA 251 300 ENSTTRP00000009760/1-220 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000043349/1-495 YCHLTFQLGP AWGTIGPQDS SPSQLSFRNL LRFLKERAGR LHALDLSGTG bmy_05274T0/1-657 YCHLTFEPDP ARGSIGPQDS SPSQLSFRNL LQFVKEQAGR LHALGLSGTG ENSP00000388531/1-180 YCHLTFELGP A--------- ---------- ---------- ---------- 301 350 ENSTTRP00000009760/1-220 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000043349/1-495 LPPEALRALG QVAGLQLQEL SLHSCRDLST EAVAALCHQQ PGLTSLDLSG bmy_05274T0/1-657 LPPEALQALG QVAGLQLQEL SLHSCRDLST EAVAALCHQQ PGLTSLDLRG ENSP00000388531/1-180 ---------- ---------- ---------- ---------- ---------- 351 400 ENSTTRP00000009760/1-220 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000043349/1-495 CSELADGAVL AVSRGLRHLR RLSLRKLQRL TDAGCSALGG LCELQSLDLA bmy_05274T0/1-657 CSELADGALL AVSRGLRRLW HLSLRKLQRL TDARCSALGG LRELQSLDMA ENSP00000388531/1-180 ---------- ---------- ---------- ---------- ---------- 401 450 ENSTTRP00000009760/1-220 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000043349/1-495 ECCLVRGREL AQSLGSVCAA PPPLASLSLA YCSSL----- ---------- bmy_05274T0/1-657 ECCLVRGREL AQALGLVCGA PHPLASLSLA YCSSLKTYPP AWPLTNRTVQ ENSP00000388531/1-180 ---------- ---------- ---------- ---------- ---------- 451 500 ENSTTRP00000009760/1-220 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000043349/1-495 ---------- ---------- ---------- ---------- ---------- bmy_05274T0/1-657 AICTYLTHLS VPRLAWCKEL RDRGLLGLGQ PSPAPLTLQT LRDLDLTACS ENSP00000388531/1-180 ---------- ---------- ---------- ---------- ---------- 501 550 ENSTTRP00000009760/1-220 --------KV LQVPQLRRLS LSLLPALTDK GLLAAA---- -RGCPSVERL ENSBTAP00000043349/1-495 --------KV LQFPQLRQLS LSLLPALTDK ALVAVA---- -KGCPSLERL bmy_05274T0/1-657 KLTDASLTKV LQVPRLRRLS LSLLPALNRQ GLAGCGQRLP QRGALGAESL ENSP00000388531/1-180 ---------- ---------- ---------- ---------- ---------- 551 600 ENSTTRP00000009760/1-220 VLSHCSRLSD EGWVQAAGSR PRLQHLNLSR CSQRSEQ--- ---------- ENSBTAP00000043349/1-495 ALSHCSLLSD QGWAQAASSW PRLQHLNLSS CSQLTEQ--- ---------- bmy_05274T0/1-657 QPPQRRGLGP GSRLPAEAAP PPVQVQSARG AVSVSGAAQC RGWAGAPCRV ENSP00000388531/1-180 ---------- ---------- ---------- ---------- ---------- 601 650 ENSTTRP00000009760/1-220 --------TL GSTGQACKQL RMADVAMCPG ISMASVRRFQ AQLPEVTCVQ ENSBTAP00000043349/1-495 --------TL DSVGQACRQL RMVDVAMCPG ISIASVRRFQ AQLPEVICIQ bmy_05274T0/1-657 LTRWPPCGTL GSTGQACKQL RMVDVAMCPG ISMASIRCFQ AQLPEVTCVQ ENSP00000388531/1-180 ---------- ---------- ---------- ---------- ---------- 651 700 ENSTTRP00000009760/1-220 SRFVGEADLT LTL ENSBTAP00000043349/1-495 SRFVGGADLT LTL bmy_05274T0/1-657 SRFVGGADLT LTL ENSP00000388531/1-180 ---------- ---