KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:54:38 2014 Check: 00 .. Name: bmy_04870T0/1-760 Len: 781 Check: 4751 Weight: 1.00 Name: ENSBTAP00000043388/1-716 Len: 781 Check: 3710 Weight: 1.00 Name: BACU003981/1-668 Len: 781 Check: 9121 Weight: 1.00 Name: ENSTTRP00000003363/1-719 Len: 781 Check: 1723 Weight: 1.00 // 1 50 bmy_04870T0/1-760 LGRAGGRGCG RSLVADLDAA AVAGLRGRGR IQSGAMSVDK AELCGSLLTW ENSBTAP00000043388/1-716 ---------- ---------- ---------- -----MSMDK EELCGSLLTW BACU003981/1-668 ---------- ---------- ---------- -----MSVDK AELCGSLLTW ENSTTRP00000003363/1-719 ---------- ---------- ---------- -----MSVDK AELCGSLLTW 51 100 bmy_04870T0/1-760 ALTMPFALSS PPPVADVPCT APLYQPPG-- ---------- ---TEQWPRS ENSBTAP00000043388/1-716 LQT----FNV PP-----PCT SPQDLSSGLA VAFVLNQIDP SWFNEAWLQ- BACU003981/1-668 LQT----FHV PP-----PCT SPQELSSGLA VAYVLNQIDP SWFNEAWLQ- ENSTTRP00000003363/1-719 LQT----FHV PP-----PCT SPQELSSGLA VAYVLNQIDP SWFNEAWLQ- 101 150 bmy_04870T0/1-760 SLCAEP---- --DVNNLKTI LQSLVEYSQD VLGHPILEQH LPDVSLIGEF ENSBTAP00000043388/1-716 GISEDPGPNR RLKVSNLKAI LQSLVEYSQD VLGHPILEQH LPDVSLIGEF BACU003981/1-668 GISDDPGPNR RLKVNNLKTI LQSLVEYSQD VLGHPILEQH LPDVSLIGEF ENSTTRP00000003363/1-719 GISDDPGPNR RLKVNNLKTI LQSLVEYSQD VLGHPILEQH LPDVSLIGEF 151 200 bmy_04870T0/1-760 SDPEELGKLL QLVLGCAISC EKKQEHIQRI MTLEESVQHV VMEAIQELMT ENSBTAP00000043388/1-716 SDPEELGKLL QLVLGCAISC EKKQEHIQRI MTLEESVQHV VMEAIQELMT BACU003981/1-668 SDPEELGKLL QLVLGCAISC EKKQEHIQRI MTLEESVQHV VMEAIQELMT ENSTTRP00000003363/1-719 SDPEELGKLL QLVLGCAISC EKKQEHIQRI MTLEESVQHV VMEAIQELMT 201 250 bmy_04870T0/1-760 KDTSDSLSPE TYGNFDSQSR RYYFLSEEAD EGDELRQRCL DLERQLVLLS ENSBTAP00000043388/1-716 KDTSDSLSPE TYGNFDSQSR RYYFLSEEAD EGDELRQRCL DLERQLVLLS BACU003981/1-668 KDTSDSLSPE TYGNFDSQSR RYYFLSEEAD EGDELRQRCL DLERQLVLLS ENSTTRP00000003363/1-719 KDTSDSLSPE TYGNFDSQSR RYYFLSEEAD EGDELRQRCL DLERQLVLLS 251 300 bmy_04870T0/1-760 EEKQSLVQEN EVLRERVGRS EGEGATGLTA KKLLLLQSQL EQLQEENFRL ENSBTAP00000043388/1-716 EEKQSLAQEN SVLRERVGRP EDEGASGLTA KKLLLLQTQL EQLQEENFRL BACU003981/1-668 EEKQSLVQEN EVLRERVGRS EGEGATGLTT KKLLLLQSQL EQLQEENFRL ENSTTRP00000003363/1-719 EEKQSLVQEN EVLRERVGRS EGEGATGLTS KKLLLLQSQL EQLQEENFRL 301 350 bmy_04870T0/1-760 ESGREDERMR CAELEREVAE LQQRNQELTS LAQEAQALKD EMDELRQSSE ENSBTAP00000043388/1-716 ESGREDERMR CVELEREVAE LQQRNQALTS LAQEAQALKD EMDELRQSSE BACU003981/1-668 ESGREDERVR CAELEREVAE LQQRNQELTS LAQEAQALKD EMDELRQSSE ENSTTRP00000003363/1-719 ESGREDERVR CAELEREVAE LQQRNQELTS LAQEAQALKD EMDELRQSSE 351 400 bmy_04870T0/1-760 RAGQLEATLS SCRRRLGELR ELRRQVRQLE ERNAGHAERT RQLEEELRRA ENSBTAP00000043388/1-716 RAGQLEATLN SCRRRLGELR ELRRQVRQLE ECNASHAERT RQLEEELRRA BACU003981/1-668 RAGQLEATLS SCRRRLGELR EL-------- ---------- ---------- ENSTTRP00000003363/1-719 RAGQLEATLS SCRRRLGELR ELRRQVRQLE ERNAGHAERT RQLEEELRRA 401 450 bmy_04870T0/1-760 GSLRAQLEAQ RRQVQELQGQ RQEEAMKAEK WLFECRNLEE KYELVSKEKE ENSBTAP00000043388/1-716 GSLRAQLEAQ RRQVQELQGK RQEEAMKAEK WLFECRNLEE KYESVTKEKE BACU003981/1-668 ---------- RRQVQELQGQ RQEEAMKAEK WLFECRNLEE KYELVSKEKE ENSTTRP00000003363/1-719 GSLRAQLEAQ RRQVQELQGQ RQEEAMKAEK WLFECRNLEE KYELVSKEKE 451 500 bmy_04870T0/1-760 RLLAERDSLR EANEELRCAQ MQPRGLTQAD PSLDPTSPAV ENLAAEILPA ENSBTAP00000043388/1-716 RLLAERDSLR EANEELRCAQ MQPRGLAQAD PSLDPTSPAV GNLAAEILPA BACU003981/1-668 RLLAERDSLR EANEELRCAQ MQPRGLTQAD PSLDPTSPAV ENLAAEILPA ENSTTRP00000003363/1-719 RLLAERDSLR EANEELRCAQ LQPRGLAQAD PSLDPTSPAV ENLAAEILPA 501 550 bmy_04870T0/1-760 ELRETLLQLQ LENKRLCQQE AADRERQEEL QRHLEEANRA RHGLEMQHRL ENSBTAP00000043388/1-716 ELRETLLRLQ LENKRLCQQE AADRERQEEL QRHLEEANRA RHGLETQHRL BACU003981/1-668 ELRETLLQLQ LENKRLCQQE AADRERQEEL QRHLEEANRA RHGLEMQHRL ENSTTRP00000003363/1-719 ELRETLLQLQ LENKRLCQQE AADRERQEEL QRHLEEANRA RHGLEMQHRL 551 600 bmy_04870T0/1-760 NQQQLSELRA QVEDLQKALQ EQGGKTEDVS AHLLPAWPSF VPPNNPSLSP ENSBTAP00000043388/1-716 NQQQLSELRA QVEDLQKALQ EQGGKTED-- SILL---KKK LEEHLQKLHE BACU003981/1-668 NQQQLSELRA QVEDLQKALQ EQGGKTED-- STLL---KRK LEEHLQKLHE ENSTTRP00000003363/1-719 NQQQLSELRA QVEDLQKALQ EQGGKTEDSI STLL---KRK LEEHLQKLHE 601 650 bmy_04870T0/1-760 PCCPMPREVH FNPAEEEAGG ASREYIEELE PPADSSTARR IEELQHNLKK ENSBTAP00000043388/1-716 ADLELQRK-- ---------- --REYIEELE PPNDSST-RR IEELQHSLQK BACU003981/1-668 ADLELQRK-- ---------- --REYIEELE PPADSSTARR IEELQHNLQK ENSTTRP00000003363/1-719 ADLELQRK-- ---------- --REYIEELE PSADSSXXXX XXXXXXXXXX 651 700 bmy_04870T0/1-760 KDADLRAMEE RYRRYVDKAR TVIQTLEPKQ RPPGGPPLEL HTLRTQLRER ENSBTAP00000043388/1-716 KDEDLRAVEE RYRRYVDRAR AVIQTLEPKQ QPPGGAPLDL HALRTQLRER BACU003981/1-668 KDADLRAMEE RYRRYVDKAR TVIQTLEPKQ RPPGGALPDL HTLRTQLRER ENSTTRP00000003363/1-719 XXXXXXXXXX XYRRYVDKAR TVIQTLEPKQ RPPGGAPPEL HTLRTQLRER 701 750 bmy_04870T0/1-760 DVRIRHLEMD FEKSRSQREQ EEKLLISAWY NMGMALQQRA GEERAPAHAQ ENSBTAP00000043388/1-716 DVRIRHLEMD FDKSRSQREQ EEKLLISAWY NMGMALQQRA GEERAPAHAQ BACU003981/1-668 DGRIRHLEMD FEKSRSQREQ EEKLLISAWY NM-------- ---RAPAHAQ ENSTTRP00000003363/1-719 DVRIRHLEMD FEKSRSQREQ EEKLLISAWY NMGMALQQRA GEERAPAHAQ 751 800 bmy_04870T0/1-760 SFLAQQRLAT NARRGPLGRL APLNVRPTDK H ENSBTAP00000043388/1-716 SFLAQQRLAT NARRGPLGRL ATLNMRPADK H BACU003981/1-668 SFLAQQRLAT NARRGPLGRL APLNMRPSDK H ENSTTRP00000003363/1-719 SFLAQQRLAT NARRGPLGRL APLNMRPTDK H