KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:54:39 2014 Check: 00 .. Name: ENSTTRP00000009855/1-618 Len: 706 Check: 4219 Weight: 1.00 Name: ENSP00000399709/1-604 Len: 706 Check: 8658 Weight: 1.00 Name: ENSBTAP00000043395/1-589 Len: 706 Check: 5477 Weight: 1.00 Name: bmy_20295T0/1-485 Len: 706 Check: 6132 Weight: 1.00 Name: BACU005386/1-592 Len: 706 Check: 7992 Weight: 1.00 // 1 50 ENSTTRP00000009855/1-618 TPESPTSPVA RPFVGSPDQP GAPTHPSPPA AAQCLAMTVT YSSQVANARL ENSP00000399709/1-604 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000043395/1-589 ---------- ---------- ---------- ------MTVT YSSQVANARL bmy_20295T0/1-485 ---------- ---------- ---------- ---------- ---------- BACU005386/1-592 ---------- ---------- ---------- ------MTVT YSSQVANARL 51 100 ENSTTRP00000009855/1-618 GSFSRLLLCW RGSIYKLLYG EFLIFLICYY IIRFIYRMAL TDDQQVIFEK ENSP00000399709/1-604 ---------- ---------- ---------- ---------- ------MFEK ENSBTAP00000043395/1-589 GSFSRLLLCW RGSIYKLLYG EFLIFLLCYY IIRFIYRMAL TDEQQVIFEK bmy_20295T0/1-485 ---------- ---------- ---------- ---------- ---------- BACU005386/1-592 GSFSRLLLCW RGSIYKLLYG EFLIFLICYY IIRFIYRMAL TDDQQVIFEK 101 150 ENSTTRP00000009855/1-618 LTLYCDSYIQ LIPISFVLGF YVTLVVTRWW NQYENLPWPD RLMNLVSCFV ENSP00000399709/1-604 LTLYCDSYIQ LIPISFVLGF YVTLVVTRWW NQYENLPWPD RLMSLVSGFV ENSBTAP00000043395/1-589 LTLYCDSYIQ LIPISFVLGF YVTLVVTRWW NQYENLPWPD RLMNLVSSFV bmy_20295T0/1-485 ---------- ---------- ---------- ---------- --MNLVSCFV BACU005386/1-592 LTLHCDSYIQ LIPISFVLGF YVTLVVTRWW NQYENLPWPD RLMNLVSCFV 151 200 ENSTTRP00000009855/1-618 EGKDEQGRLL RRTLMRYANL GNVLILRSVS AAVYKRFPSP QHLVKAGFMT ENSP00000399709/1-604 EGKDEQGRLL RRTLIRYANL GNVLILRSVS TAVYKRFPSA QHLVQAGFMT ENSBTAP00000043395/1-589 EGKDEQGRML RRTLMRYANL GNVLILRSVS AAVYKRFPSP QHLVKAGFMT bmy_20295T0/1-485 EGKDEQGRLL RRTLMRYANL GNVLILRSVS AAVYKRFPSP QHLVKAGFMT BACU005386/1-592 EGKDEQGRLL RRTLMRYANL GNVLILRSVS AAVYKRFPSP QHLGKAGFMT 201 250 ENSTTRP00000009855/1-618 PSEHKHLQKL SLPHNSFWMP WVWFANLSTK AWIGGRIRDP VLLQSLLNEM ENSP00000399709/1-604 PAEHKQLEKL SLPHNMFWVP WVWFANLSMK AWLGGRIRDP ILLQSLLNEM ENSBTAP00000043395/1-589 PSEHKHLQKL SLPHNSFWMP WVWFANLSTK AWIGGRIRDP ILLQSLLNEM bmy_20295T0/1-485 PSEHKHLQKL SLPHNSFWMP WVWFANLSTK AWIGGRIRDP VLLQSLLNEM BACU005386/1-592 PSEHKHLQKL SLPHNSFWMP WVWFANLSTK AWIGGRIRDP VLLQSLLNEM 251 300 ENSTTRP00000009855/1-618 NTLRTQCGQL YAYDWISIPL VYTQVVTVAV YSFFLACLVG RQFLNPAKAY ENSP00000399709/1-604 NTLRTQCGHL YAYDWISIPL VYTQVVTVAV YSFFLTCLVG RQFLNPAKAY ENSBTAP00000043395/1-589 NTLRTQCGQL YAYDWISIPL VYTQVVTVAV YSFFLACLIG RQFLNPAKAY bmy_20295T0/1-485 NTLRTQCGQL YAYDWISIPL VYTQVVTVAV YSFFLACLIG RQFLNPAKAY BACU005386/1-592 NTLRTQCGQL YAYDWISIPL VYTQVVTVAV YSFFLACLIG RQFLNPAKAY 301 350 ENSTTRP00000009855/1-618 PGHEMDLVVP LFTFLQFFFY AGWLKVAEQL INPFGEDDDD FETNWIVDRS ENSP00000399709/1-604 PGHELDLVVP VFTFLQFFFY VGWLKVAEQL INPFGEDDDD FETNWIVDRN ENSBTAP00000043395/1-589 PGHEMDLVVP LFTFLQFFFY AGWLKVAEQL INPFGEDDDD FETNWIVDRS bmy_20295T0/1-485 PGHEMDLVVP LFTFLQFFFY AGWLKVAEQL INPFGEDDDD FETNWIVDRS BACU005386/1-592 PGHEMDLVVP LFTFLQFFFY AGWLKVAEQL INPFGEDDDD FETNWIVDRS 351 400 ENSTTRP00000009855/1-618 LQVSLLAVDE MHQDLPPMER DMYWNEPEPH PPYTAASAQS RRPSFFGSTF ENSP00000399709/1-604 LQVSLLAVDE MHQDLPRMEP DMYWNKPEPQ PPYTAASAQF RRASFMGSTF ENSBTAP00000043395/1-589 LQVSLLAVDE MHQDLPPMER DMYWNEPEPH PPYTAASAQS RRPSFFGSTF bmy_20295T0/1-485 LQVSLLAVDE MHQDLPPMER DMYWNEPEPQ PPYTAASAQS RRPSFFGSTF BACU005386/1-592 LQVSLLAVDE MHQDLPPMER DMYWNEPEPQ PPYTAASAQS RRPSFFGSTF 401 450 ENSTTRP00000009855/1-618 NISLD-EDLE FQPDP---EE EESAHTGIAG RFRGLQSHDQ --PR-NSKTK ENSP00000399709/1-604 NISLNKEEME FQPNQ---ED EEDAHAGIIG RFLGLQSHDH HPPRANSRTK ENSBTAP00000043395/1-589 NISLDKEDME FQPDL---EE QEGAHSGIIG RFLGLQSLDR QSPRTNSKTK bmy_20295T0/1-485 NISLDKEDME FQPDL-EEEE EERAHPGITG RFLGLQSHDR QPPRTNSKTK BACU005386/1-592 NISLDKEDME FQPDLEEEEE EERAHAGITG RFLGLQSHDR QPPRTNSKTK 451 500 ENSTTRP00000009855/1-618 LLWPXXXXXX XXXXXXXXXX XXXXXXXXXX XXXX--XXXX XXXXXXXXXX ENSP00000399709/1-604 LLWPKRESLL HEGLPKNHKA AKQNVRGQED NKAWKLKAVD AFKSAPLYQR ENSBTAP00000043395/1-589 LLWPKKEVLS HENQPKNLGG AGQNTSDQED SKAW--KGED VFKSAVLYGR bmy_20295T0/1-485 LLWPKKEVLS REGQPKNPGG AGQDTSDQED SKAW--KGED AFQSAVLYGR BACU005386/1-592 LLWPKKEVLS REGQPRNPGG AGQDTSDQED SKAW--KGES AFQSAVLYGR 501 550 ENSTTRP00000009855/1-618 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000399709/1-604 PGYYSAPQTP LSPTPMFFPL EPSAPSKLHS VTGID--TKD KSLKTVSSGA ENSBTAP00000043395/1-589 SGYHSAPQTP LSHTPMVFPP GQSAPSSLRR ISGIDDPVKD QSLQPATPRS bmy_20295T0/1-485 SGYHSAPQTP LSHTPMVFPP GQSAPSSLCK VSGIDDTVKD LSLQPATPRS BACU005386/1-592 SGYHSAPQTP LSHTPVVFPP GQSAPSSLCK VSGIDDTVKD QSLQPATPRS 551 600 ENSTTRP00000009855/1-618 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXMSEAPE -HLREPHLGQ ENSP00000399709/1-604 KKSFELLSES DGALMEHPEV SQVRRKTVEF NLTDMPEIPE NHLKEP-LEQ ENSBTAP00000043395/1-589 KKSFELLPEN AGASTEHPEV IHMRRKTVEF NLMDMSEAPE -HLREPHLGQ bmy_20295T0/1-485 KKSSELLPES AGASTEHPEV SHMRRKTVEF NLTDMSEAPE -HLREPHLGQ BACU005386/1-592 KKSFELLPES AGASTEHPEV SHMRRKTVEF NLTDMSEAPE -HLREPHLGQ 601 650 ENSTTRP00000009855/1-618 STSNIHTILK DRGDPYWALE NNR----DEA RS-------- ---------- ENSP00000399709/1-604 SPTNIHTTLK DHMDPYWALE NRSVLHLNQG HCIALCPTPA SLALSLPFLH ENSBTAP00000043395/1-589 STSNIHTILK DHGDPYWDLE NRSVLYSNQG H--------- ---------- bmy_20295T0/1-485 STSNIHTILK DRGDPYWALE NRSVLYPNQG H--------- ---------- BACU005386/1-592 STSNIHTILK DRGDPYWALE NRSVLYPNQG H--------- ---------- 651 700 ENSTTRP00000009855/1-618 ---------- ---------- ---------- ---------- ---------- ENSP00000399709/1-604 NFLGFHHCQS TLDLRPALAW GIYLATFTGI LGKCSGPFLT SPWYHPEDFL ENSBTAP00000043395/1-589 ---------- ---------- ---------- ---------- ---------- bmy_20295T0/1-485 ---------- ---------- ---------- ---------- ---------- BACU005386/1-592 ---------- ---------- ---------- ---------- ---------- 701 750 ENSTTRP00000009855/1-618 ------ ENSP00000399709/1-604 GPGEGR ENSBTAP00000043395/1-589 ------ bmy_20295T0/1-485 ------ BACU005386/1-592 ------