KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 17:54:39 2014  Check: 00 ..

 Name: ENSP00000361036/1-220     Len:    220  Check:  4075  Weight:  1.00
 Name: bmy_18529T0/1-169         Len:    220  Check:  570  Weight:  1.00
 Name: BACU010335/1-169          Len:    220  Check:  1321  Weight:  1.00
 Name: ENSTTRP00000002909/1-220  Len:    220  Check:  3438  Weight:  1.00
 Name: ENSBTAP00000043399/1-220  Len:    220  Check:  4583  Weight:  1.00

//


                          1                                                   50
ENSP00000361036/1-220     MRSSLTMVGT LWAFLSLVTA VTSSTSYFLP YWLFGSQMGK PVSFSTFRRC 
bmy_18529T0/1-169         MRSSLTLLGT LWAFLSLVTA VASSTSYFLP YWLFGSQLGK PVSFSTFRRC 
BACU010335/1-169          MRSSLTLLGT LWAFLSLVTA VASSTSYFLP YWLFGSQLGK PVSFSTFRRC 
ENSTTRP00000002909/1-220  MRSSLTLAGT LWAFLSLVTA VASSTSYFLP YWLFGSQLGK PVSFSTFRRC 
ENSBTAP00000043399/1-220  MRSSLTLVGT LWAFLSLVTA VASSTSYFLP YWLFGSQLGK PVSFSTFRRC 


                          51                                                 100
ENSP00000361036/1-220     NYPVRGEGHS LIMVEECGRY ASFNAIPSLA WQMCTVVTGA GCALLLLVAL 
bmy_18529T0/1-169         NYPVRGEGQS LIMVEECGRY ASFSAIPSLA WQMCTVVTGA GCALLLLVAL 
BACU010335/1-169          NYPVRGEGQS LIMVEECGRY ASFNAIPSLA WQMCTVVTGA GCALLLLVAL 
ENSTTRP00000002909/1-220  NYPVRGEGQS LIMVEECGRY ASFNAIPSLA WQMCTVVTGA GCALLLLVAL 
ENSBTAP00000043399/1-220  NYPVRGEGQS LIMVEECGRY ASFSAIPSLA WQMCTVVTGA GCALLLLVAL 


                          101                                                150
ENSP00000361036/1-220     AAVLGCCMEE LISRMMGRCM GAAQFVGGLL ISSGCALYPL GWNSPEIMQT 
bmy_18529T0/1-169         AAVLGCCMEE LISRMMGRCM GAAQFVGGLL ISSGCALYPL GWNSPEIMQT 
BACU010335/1-169          TAVLGCCMEE LISRMMGRCM GAAQFVGGLL ISSGCALYPL GWNSPEIMQT 
ENSTTRP00000002909/1-220  AAVLGCCMEE LISRMMGRCM GAAQFVGGLL ISSGCALYPL GWNSPEIMQT 
ENSBTAP00000043399/1-220  AAVLGCCMEE LISRMMGRCM GAAQFVGGLL ISSGCALYPL GWNSPEIMQT 


                          151                                                200
ENSP00000361036/1-220     CGNVSNQFQL GTCRLGWAYY CAGGGAAAAM LICTWLSCFA GRNPKPVILV 
bmy_18529T0/1-169         CGNVSNQFQL GKVA------ CAG------- ----WR---- ---------- 
BACU010335/1-169          CGNVSNQFQL GKVA------ CAG------- ----WR---- ---------- 
ENSTTRP00000002909/1-220  CGNVSNQFQL GTCRLGWAYY CAGGGAAAAM LICTWLSCFA GRHPKPVMLV 
ENSBTAP00000043399/1-220  CGNVSNQFQL GTCRLGWAYY CAGGGAAAAM LICTWLSCFA GRNPKPVMLV 


                          201                                                250
ENSP00000361036/1-220     ESIMRNTNSY AMELDHCLKP 
bmy_18529T0/1-169         ---------- ---------- 
BACU010335/1-169          ---------- ---------- 
ENSTTRP00000002909/1-220  ESIMRNTNSY AMELDHCLKP 
ENSBTAP00000043399/1-220  ESIMRNTNSY TMELDHCLKP