KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:54:41 2014 Check: 00 .. Name: ENSP00000283243/1-1463 Len: 1472 Check: 2881 Weight: 1.00 Name: ENSBTAP00000043437/1-1463 Len: 1472 Check: 2240 Weight: 1.00 Name: ENSTTRP00000010457/1-1462 Len: 1472 Check: 6318 Weight: 1.00 Name: bmy_05588T0/1-733 Len: 1472 Check: 9331 Weight: 1.00 Name: BACU010071/1-1454 Len: 1472 Check: 8302 Weight: 1.00 // 1 50 ENSP00000283243/1-1463 -MLLSP-SLL LLLLLGAPRG CAEGVAAALT PERLLEWQDK GIFVIQSESL ENSBTAP00000043437/1-1463 MPLLSL--SL LLLLLQVPAG SAETAAWAVT PERLREWQDK GIFIIQSENL ENSTTRP00000010457/1-1462 MALLSLLPPL LPLLLAVPAG SAEGAAVALT PERLLEWQDK GIFIIQSENL bmy_05588T0/1-733 ---------- ---------- ---------- ---------- ---------- BACU010071/1-1454 MSLLSLLPPL LPLLLAVPAA SAEGAAVALT PERLLEWQDK GIFIIQSENL 51 100 ENSP00000283243/1-1463 KKCIQAGKSV LTLENCKQAN KHMLWKWVSN HGLFNIGGSG CLGLNFSAPE ENSBTAP00000043437/1-1463 EKCIQASKST LTLENCKPPN KYMLWKWVSN HRLFNIGGSG CLGLNVSSPE ENSTTRP00000010457/1-1462 EKCIQAGKST LTLESCKPPN KYMLWKWVSN HRLFNIGGSG CLGLNVSNPE bmy_05588T0/1-733 ---------- ---------- ---------- ---------- ---------- BACU010071/1-1454 EKCIQAGKST LTLESCKPPN KYMLWKWVSN HRLFNIGGSG CLGLNVSNPE 101 150 ENSP00000283243/1-1463 QPLSLYECDS TLVSLRWRCN RKMITGPLQY SVQVAHDNTV VASRKYIHKW ENSBTAP00000043437/1-1463 QPLSIYECDS THVSLKWHCN KKTITGPLQY LVQVKQDNTL VASRKYLHKW ENSTTRP00000010457/1-1462 QPLSIYECDS THISLKWRCN RKMITGPLQY MVQVKHD-TL VASCKYLHKW bmy_05588T0/1-733 ---------- ---------- ---------- ---------- ---------- BACU010071/1-1454 QPLSIYECDS THISLKWRCN RKMITGPLQY MVQVKHDNTL VASWKYHHKW 151 200 ENSP00000283243/1-1463 ISYGSGGGDI CEYLHKDLHT IKGNTHGMPC MFPFQYNHQW HHECTREGRE ENSBTAP00000043437/1-1463 VSYMSGGGGI CDYLHKDLYT IKGNAHGTPC MFPFQYNQQW HHECTREGRE ENSTTRP00000010457/1-1462 VSYMSGGGGI CXXXXXXLYT IKGNAHGTPC MFPFQYNRQW YHECTREGRE bmy_05588T0/1-733 ---------- ---------- ---------- ---------- ---------- BACU010071/1-1454 VSYTSGGGGI CEYLHKDLYT IKGNAHGTPC MFPFQYNRQW HHECTREGRE 201 250 ENSP00000283243/1-1463 DDLLWCATTS RYERDEKWGF CPDPTSAEVG CDTIWEKDLN SHICYQFNLL ENSBTAP00000043437/1-1463 DNLLWCATTS RYERDEKWGF CPDPTSTEVG CDAVWEKDLH SRICYQFNLL ENSTTRP00000010457/1-1462 DNLLWCATTS RYERDEKWGF CPDPTSTEVG CDAVWEKDLN SHICYQFNLL bmy_05588T0/1-733 ---------- ---------- ---------- ---------- ---------- BACU010071/1-1454 DNLLWCATTS RYERDEKWGF CPDPTSTEVG CDAVWEKDLN SHICYQFNLL 251 300 ENSP00000283243/1-1463 SSLSWSEAHS SCQMQGGTLL SITDETEENF IREHMSSKTV EVWMGLNQLD ENSBTAP00000043437/1-1463 SSLSWSEAHS SCQMQGAALL SIADETEENF VRKHLGSEAV EVWMGLNQLD ENSTTRP00000010457/1-1462 SSLSWSEAHS SCQMQGGALL SIADETEENF IRKHFGNEAV EVWIGLNQLD bmy_05588T0/1-733 ---------- ---------- ---------- ---------- ---------- BACU010071/1-1454 SSLSWSEAHS SCQMQGGALL SIADETEENF IRKHFGSEAV EVWIGLNQLD 301 350 ENSP00000283243/1-1463 EHAGWQWSDG TPLNYLNWSP EVNFEPFVED HCGTFSSFMP SAWRSRDCES ENSBTAP00000043437/1-1463 EDAGWQWSDR TPLNYLNWKP EINFEPFVEY HCGTFNAFMP KAWKSRDCES ENSTTRP00000010457/1-1462 ENAGWQWSDR TPLNYLNWNP EINFEPFVEY HCGTFNAFMP NAWRSRDCES bmy_05588T0/1-733 ---------- ---------- ---------- ---------- ---------- BACU010071/1-1454 ENAGWQWSDR TPLNYLNWNP EINFEPFVEY HCGTFNAFMP NAWRSRDCES 351 400 ENSP00000283243/1-1463 TLPYICKKYL NHIDHEIVEK DAWKYYATHC EPGWNPYNRN CYKLQKEEKT ENSBTAP00000043437/1-1463 TLPYVCKKYL NPTDHGVVEK DAWKYYATHC EPGWNPHNRN CYKLQKEKKT ENSTTRP00000010457/1-1462 TLPYICKKYL NHTDHEVVEN DAWKYYATHC EPGWNPHNRN CYKLQKEKKT bmy_05588T0/1-733 ---------- ---------- ---------- ---------- ---------- BACU010071/1-1454 TLPYICKKYL NHTDHEVVDN DAWKYYVTHC EPGWNPHNRN CYQLQKEKKT 401 450 ENSP00000283243/1-1463 WHEALRSCQA DNSALIDITS LAEVEFLVTL LGDENASETW IGLSSNKIPV ENSBTAP00000043437/1-1463 WNEALQSCQS NNSVLTDITS LAEVEFLVTL LGDENASETW IGLSSHKIPV ENSTTRP00000010457/1-1462 WNEALHSCQS NNSALIDIDS LAEVEFLVTL LGDENASETW IGLSNNKIPV bmy_05588T0/1-733 -------MRT DIKALINIVL IA-------- ---------- ---------- BACU010071/1-1454 WNEALHSCQS NNSALIDIDS LAEVEFLVTL LGDENASETW IGLSNNKIPV 451 500 ENSP00000283243/1-1463 SFEWSNDSSV IFTNWHTLEP HIFPNRSQLC VSAEQSEGHW KVKNCEERLF ENSBTAP00000043437/1-1463 SFEWSNGSSV TFTNWHTLEP HIFPNRSQLC VSAEQSEGHW KVKNCEETLF ENSTTRP00000010457/1-1462 SFEWSDGSSV IFTNWHTPEP QIFPNTSQLC VSAEQSEGHW KVKNCKETLF bmy_05588T0/1-733 ---------- -YTN------ ---------- ---------- ---------- BACU010071/1-1454 SFEWSDGSSV IFTNWYTLEP QIFPNRSQLC VSAEQSEGHW KVKNCKETLF 501 550 ENSP00000283243/1-1463 YICKKAGHVL SDAESGCQEG WERHGGFCYK IDTVLRSFDQ ASSGYYCPPA ENSBTAP00000043437/1-1463 YLCKKTGLVL SDTESGCQKG WERHGKFCYK IDTVLRSFDH ASSGYYCPPA ENSTTRP00000010457/1-1462 YVCKKTGRVL SDTESGCQKG WERHGGFCYK IDTVLRSFDH ASSGYYCPPA bmy_05588T0/1-733 ---------- ---------- ---------- ---------- ---------- BACU010071/1-1454 YVCKKTGHVL SDTESGCQKG WERHGGFCYK IDTVLRSFDH ASSGYYCPPA 551 600 ENSP00000283243/1-1463 LVTITNRFEQ AFITSLISSV VKMKDSYFWI ALQDQNDTGE YTWKPVGQKP ENSBTAP00000043437/1-1463 LITITSRFEQ AFITSLISSV VKTKDTYFWI ALQDQNNTGE YTWKTAGQQL ENSTTRP00000010457/1-1462 LVTITNRFEQ AFITSLISSV VKTKDTYFWI ALQDQNDTGE YTWKTAGQKS bmy_05588T0/1-733 --------EQ ---------- ---------- ---------- ---------- BACU010071/1-1454 LVTITNRFEQ AFITSLISSV VKTKDTYFWI ALQDQNDTGE YTWKTAGQKS 601 650 ENSP00000283243/1-1463 EPVQYTHWNT HQPRYSGGCV AMRGRHPLGR WEVKHCRHFK AMSLCKQPVE ENSBTAP00000043437/1-1463 EPVKYTHWNT RQPRYSGGCV VMRGRSHPGR WEVRDCRHFK AMSLCKQPVE ENSTTRP00000010457/1-1462 EPVKYTHWNA RQPRYSGGCV VIRGRSPPGR WEVKDCRHFK AMSLCKQPVE bmy_05588T0/1-733 ---------- ---------- ---------- -----GRHSL GIEM------ BACU010071/1-1454 EPVKYTHWNA RQPRYSGGCV VIRGRSPPGR WEVKDCRHFK AMSLCKQPVE 651 700 ENSP00000283243/1-1463 NQEKAEYEER WPFHPCYLDW ESEPGLASCF KVFHSEKVLM KRTWREAEAF ENSBTAP00000043437/1-1463 NREKTKQEEG WPFHPCYLDW ESEPGLASCF KVFHSEKVLM KRTWRQAEEF ENSTTRP00000010457/1-1462 NQEKPEQEER WPFSSCYLDW ESEPGLASCF KVFHSEKVLT KRTWREAEEF bmy_05588T0/1-733 ---------- ---------- ---------- -VFHSEKVLT KRTWREAEEF BACU010071/1-1454 NQEKPEQEER WPFSPCYLDW ESEPGLASCF KVFHSEKVLT KRTWREAEEF 701 750 ENSP00000283243/1-1463 CEEFGAHLAS FAHIEEENFV NELLHSKFNW TEERQFWIGF NKRNPLNAGS ENSBTAP00000043437/1-1463 CEEFGAHLAS FAHIEEENFV NELLHSKFNR TEERQFWIGF NKRNPLNAGS ENSTTRP00000010457/1-1462 CEEFGAHLAS FAHIEEENFV NELLHSKFNR XXXXXXXXXX XXXXXXXXXX bmy_05588T0/1-733 CEEFGAHLAS FAHIEEENFV NELLHSKFNR TEERQFWIGF NKRNPLNAGS BACU010071/1-1454 CEEFGAHLAS FAHIEEENFV NELLHSKFNR TEERQFWIGF NKRNPLNAGS 751 800 ENSP00000283243/1-1463 WEWSDRTPVV SSFLDNTYFG EDARNCAVYK ANKTLLPLHC GSKREWICKI ENSBTAP00000043437/1-1463 WEWSDGTPVV SSFLDNSYFG EDARNCAVYK ANKTLLPSYC GSKREWICKI ENSTTRP00000010457/1-1462 XXXXXXXXVV SSFLDNNYFG EDARNCAVYK ANKTLLPSYC GSKREWICKI bmy_05588T0/1-733 WEWSDGTPVV SSFQDNNYFG EDARNCAVYK ANKTLLPSYC GSKREWICKI BACU010071/1-1454 WEWSDGTPVV SSFLDNNYFG EDARNCAVYK ANKTLLPSYC GSKREWICKI 801 850 ENSP00000283243/1-1463 PRDVKPKIPF WYQYDVPWLF YQDAEYLFHT FASEWLNFEF VCSWLHSDLL ENSBTAP00000043437/1-1463 PRDVRPKVPP WYQYDAPWLF YQDAEYLFHI SASEWSSFEF VCGWLRSDIL ENSTTRP00000010457/1-1462 PRDVRPKIPP WYQYDAPWLF YQDAEYLFHT SATEWSSFEF VCGWLRSDIL bmy_05588T0/1-733 PRDVRPKIPP WYQYDAPWLF YQDAEYLFHT SASEWSSFEF VCGWLRSDIL BACU010071/1-1454 PRDVRPKIPP WYQYDAPWLF YQDAEYLFHT SASEWSSFEF VCGWLRSDIL 851 900 ENSP00000283243/1-1463 TIHSAHEQEF IHSKIKALSK YGASWWIGLQ EERANDEFRW RDGTPVIYQN ENSBTAP00000043437/1-1463 TIHSAHEQEF IHSKIRALSK YGVNWWIGLR EERASDEFRW RDGSPVIYQN ENSTTRP00000010457/1-1462 TIHSAREQEF IHGKIRALSK YGVNWWIGLR EERVNDEFRW RDGSPVIYQN bmy_05588T0/1-733 TIHSAREQEF IHGKIRALSK YGVNWWIGLR EERANDEFRW RDGSPVIYQN BACU010071/1-1454 TIHSAREQEF IHGKIRALSK YGVNWWIGLR EERANDEFRW RDGSPVIYQN 901 950 ENSP00000283243/1-1463 WDTGRERTV- NNQSQRCGFI SSITGLWGSE ECSVSMPSIC KRKKVWLIEK ENSBTAP00000043437/1-1463 WDKGKERSMG LNESQRCGFI SSITGLWASE ECSISMPSIC KRKKVWVIEK ENSTTRP00000010457/1-1462 WDKGKEESM- INQSQRCGFI SSITGLWASE ECSVSMPSIC KRKKFWIIEK bmy_05588T0/1-733 WDNGKEESM- INQSQRCGFI SSITGLWASE ECSVSMPSIC KRKKFWIIEK BACU010071/1-1454 WDNGKEESM- INQSQRCGFI SSITGLWASE ECSVSMPSIC KRKKFWIIEK 951 1000 ENSP00000283243/1-1463 KKDTPKQHGT CPKGWLYFNY KCLLLNIPKD PSSWKNWTHA QHFCAEEGGT ENSBTAP00000043437/1-1463 KKDIPKQHGT CPKGWLYFDY KCLLLKIPEG PSDWKNWTSA QDFCVEEGGT ENSTTRP00000010457/1-1462 EKDTPKKHGT CPKGWLYFDY KCLLMKIPKD PSNWKNWTSA QDFCVEEGGT bmy_05588T0/1-733 EKDTPKKHGT CPKGWLYFDY KCLLMKIPKD PSDWKNWTSA QDFCVEEGGT BACU010071/1-1454 EKDTPKKHGT CPKGWLYFDY KCLLMKIPKD PSDWKNWTSA QDFCVEEGGT 1001 1050 ENSP00000283243/1-1463 LVAIESEVEQ AFITMNLFGQ TTSVWIGLQN DDYETWLNGK PVVYSNWSPF ENSBTAP00000043437/1-1463 LVAIENEVEQ AFITMNLFGH TTNVWIGLQD DDYEKWLNGR PVSYSNWSPF ENSTTRP00000010457/1-1462 LVAIENEVEQ AFITMNLFGH TTNVWIGLQN DDYEKWLNGR PVSYSNWSPF bmy_05588T0/1-733 LVAIENEVEQ AFITMNLFGH TTNVWIGLQN DDYEKWLNGR PVSYSNWSPF BACU010071/1-1454 LVAIENEVEQ AFITMNLFGH TTNVWIGLQN DDYEKWLNGR PVSYSNWSPF 1051 1100 ENSP00000283243/1-1463 DIINIPSHNT TEVQKHIPLC ALLSSNPNFH FTGKWYFEDC GKEGYGFVCE ENSBTAP00000043437/1-1463 DTKNIPNHNT TEVQKRIPLC GLLSNNPNFH FTGKWYFEDC RE-GYGFVCE ENSTTRP00000010457/1-1462 DIVNIPSHNT TEVQKRIPLC ALLSNNPNFH FTGKWYFEDC REEGYGFVCE bmy_05588T0/1-733 DIVNIPSHNT TEVQKRIPLC ALLSNNPNFH FTGKWYFEDC REEGYGFVCE BACU010071/1-1454 DIVNIPSHNT TEVQKRIPLC ALLSNNPNFH FTGKWYFEDC REEGYGFVCE 1101 1150 ENSP00000283243/1-1463 KMQ------D TSGHGVNTSD MYPMPNTLEY GNRTYKIINA NMTWYAAIKT ENSBTAP00000043437/1-1463 KMQ------D ASGHSINTSD MYPIPNTLEY GNRTYKIINA NMTWYTALKT ENSTTRP00000010457/1-1462 KMQ------D TSGHSINTSD MYPIPNTLEY GNRTYKIINA NMTWYTALKT bmy_05588T0/1-733 KMQVSPMLTD TPGHSINTSD MYPIPNTLEY GNRTYKIINA NMTWYTALKT BACU010071/1-1454 KMQ------D TPGHSINTSD MYPIPNTLEY GNRTYKIINA NMTWYTALKT 1151 1200 ENSP00000283243/1-1463 CLMHKAQLVS ITDQYHQSFL TVVLNRLGYA HWIGLFTTDN GLNFDWSDGT ENSBTAP00000043437/1-1463 CLMHGAELAS ITDQYHQSFL TVILNRVGYA HWIGLFTEDN GLSFDWSDGT ENSTTRP00000010457/1-1462 CLMHGAELVS ITDQYHQSFL TVILNRLGHA HWIGLFTEDN GLNFDWSDGT bmy_05588T0/1-733 CLMHGAEL-- ---------- ---------- ---------N GLNFDWSDGT BACU010071/1-1454 CLMHGAELVS ITDQYHQSFL TVILNRLGHA HWIGLFTEDN GLNFDWSDGT 1201 1250 ENSP00000283243/1-1463 KSSFTFWKDE ESSLLGDCVF ADSNGRWHST ACESFLQGAI CHVPPETRQS ENSBTAP00000043437/1-1463 KSSFTFWKDD ESSFLGDCVF ADTSGRWSST ACESYLQGAI CQVPTETRLS ENSTTRP00000010457/1-1462 KSSFTFWKDD ESSFLGDCVF ADTSGHWSST ACESYLQGAI CHVPTEPRPF bmy_05588T0/1-733 KSSFTFWKDD ESSVLGDCVF ADTSGHWSST A--------- ---------- BACU010071/1-1454 KSSFTFWKDD ESSFLGDCVF ADTSGHWSST ACESYLQGAI CHVPTETRPF 1251 1300 ENSP00000283243/1-1463 EHPELCSETS IPWIKFKSNC YSFSTVLDSM SFEAAHEFCK KEGSNLLTIK ENSBTAP00000043437/1-1463 GRLELCSETS IPWIKFKSNC YSFSTVLEST SFEAAHEFCK KKGSNLLTIK ENSTTRP00000010457/1-1462 GYPELCSETS IPWIKFKSNC YSFSTVLDST SFEAAHEFCK KE-SNLLTIK bmy_05588T0/1-733 ---------- ---------- -----FLDST NFEAAHEFCK KEGSNLLTIK BACU010071/1-1454 GYPELCSETS IPWIKFKSNC YSFSTVLDST SFEAAHEFCK KEGSNLLTIK 1301 1350 ENSP00000283243/1-1463 DEAENAFLLE ELFAFGSSVQ MVWLNAQFDG NNETIKWFDG TPTDQSNWGI ENSBTAP00000043437/1-1463 DEAENSFLLE ELLAFRSSVQ MIWLNAQFDG DNETIKWFDG TPTDQSNWGI ENSTTRP00000010457/1-1462 DEAENSFLLD QLLAFSSSVK MVWLNAQFDG DNETIKWFDG TLADQSNWGI bmy_05588T0/1-733 DEAENSFLLD QLLAFSSSVQ MVWLNAQFDG DNETIKWFDG TPADQSNWGI BACU010071/1-1454 DEAENSFLLD QLLAFSSSVQ MVWLNAQFDG DNETIKWFDG TPTDQSNWGI 1351 1400 ENSP00000283243/1-1463 RKPDTDYFKP HHCVALRIPE GLWQLSPCQE KKGFICKMEA DIHTAEALPE ENSBTAP00000043437/1-1463 RKPEVYHFKP HLCVALRIPE GVWQLSSCQD KKGFICKMEA DIHTVKKHPG ENSTTRP00000010457/1-1462 RKPEMDHVKP HLCVALRIPE GVWQLSSCQD KKGFICKMEA DIHTVKEDPG bmy_05588T0/1-733 KKPEMDHVKP HLCVALRIPE GVWQLSSCQD KKGFICKMEA ---------- BACU010071/1-1454 RKPEMDHVKP HLCVALRIPE GVWQLTSCQD KKGFICKMEA ---------- 1401 1450 ENSP00000283243/1-1463 KGPSHSIIPL AVVLTLIVIV AICTLSFCIY KHNGGFFRRL AGFRNPYYPA ENSBTAP00000043437/1-1463 KGPSHSVIPL TVALTLLVIL AISTLSFCMY KHSHIIFGRL AQFRNPYYPS ENSTTRP00000010457/1-1462 K-PSHSIIPL AVAVTLIVIL AISTLSFCIY KHNSGIFRRL AQFGNPYYPA bmy_05588T0/1-733 -GPSHSIIPL AVAVTLIVIL AISTLSFCIY KHNSGIFRRL AQFGNPYYPA BACU010071/1-1454 -GPSHSIIPL AVAVTLIVIL AISTLSFCIY KHNSGIFRRL AQFGNPYYPA 1451 1500 ENSP00000283243/1-1463 TNFSTVYLEE NILISDLEKS DQ ENSBTAP00000043437/1-1463 ANFSTVHLEE NILISDLEKN DQ ENSTTRP00000010457/1-1462 TNFSTVNLEE NILISDLEKN DQ bmy_05588T0/1-733 TNFSTVHLEE DILISDLEKN DQ BACU010071/1-1454 TNFSTVHLEE DILISDLEKN DQ