KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:54:43 2014 Check: 00 .. Name: ENSBTAP00000043452/1-1404 Len: 1499 Check: 7791 Weight: 1.00 Name: ENSP00000282406/1-1493 Len: 1499 Check: 2538 Weight: 1.00 Name: bmy_00344T0/1-1379 Len: 1499 Check: 4812 Weight: 1.00 Name: BACU013913/1-1487 Len: 1499 Check: 6230 Weight: 1.00 Name: ENSTTRP00000006043/1-1444 Len: 1499 Check: 5540 Weight: 1.00 // 1 50 ENSBTAP00000043452/1-1404 MAELSETEGP VDWKERCVAL ESQLMKFRVQ ASKIRELLAE KMQQLERQVI ENSP00000282406/1-1493 MAELSEPEGP VDWKERCVAL ESQLMKFRVQ ASKIRELLAE KMQQLERQVI bmy_00344T0/1-1379 ---------- ---------- ---------- ---------- -MQQLERQVI BACU013913/1-1487 MAELSETEGP VDWKERCVAL ESQLMKFRVQ ASKIRELLAE KMQQLERQVI ENSTTRP00000006043/1-1444 ---------- ---------- ---------- ---------- -MQQLERQVI 51 100 ENSBTAP00000043452/1-1404 DAERQAEKAF QQVQVMEEKL KAANIQTSES ETRLYKKCQD LETLIQEKED ENSP00000282406/1-1493 DAERQAEKAF QQVQVMEDKL KAANIQTSES ETRLYNKCQD LESLIQEKDD bmy_00344T0/1-1379 DAERQAEKAF QQVQVMEEKL KAANIQTSES ETRLYKKCQD LETLIQEKDD BACU013913/1-1487 DAERQAEKAF QQVQVMEEKL KAANIQTSES ETRLYKKCQD LETLIQEKDD ENSTTRP00000006043/1-1444 DAERQAEKAF QQVQVMEEKL KAANIQTSES ETRLYKKCQD LETLIQEKDD 101 150 ENSBTAP00000043452/1-1404 IIQNLELQLE EQKQIRIQEA KIIEEKAAKI KEWVTVKLNE LELENQNLRL ENSP00000282406/1-1493 VIQNLELQLE EQKQIRIQEA KIIEEKAAKI KEWVTVKLNE LELENQNLRL bmy_00344T0/1-1379 IIQTLELQLE EQKQIRIQEA KIIEEKAAKI KEWVTVKLNE LELENQNLRL BACU013913/1-1487 IIQNLELQLE EQKQIRIQEA KIIEEKAAKI KEWVTVKLNE LELENQNLRL ENSTTRP00000006043/1-1444 IIQNLELQLE EQKQIRIQEA KIIEEKAAKI KEWVTVKLNE LELENQNLRL 151 200 ENSBTAP00000043452/1-1404 INQNQTEEIK TIQSKLQ-VF NERLLKKPVK KYFVPSKSSR KEVSCFHTKA ENSP00000282406/1-1493 INQNQTEEIR TMQSKLQEVQ GKKSSTVSTL KLSEGQRLSS LTFGCFLSRA bmy_00344T0/1-1379 INQNQTEEIR TIQSKLQEVQ GKKLSTVSTP KLTEGQRLSS LTFGCFLAQA BACU013913/1-1487 INQNQTEEIR TIQSKLQEVQ GKKLSTVSTP KLTEGQRLSS LTFGCFLSRA ENSTTRP00000006043/1-1444 INQNQTEEIR TIQSKLQEVQ GKKLSTVSTP KLTEGQRLSS LTFGCFLSRA 201 250 ENSBTAP00000043452/1-1404 FRRPA----- ---------- --SEQSDLWV LFVPSKESSS SCKIKLTSQC ENSP00000282406/1-1493 RSPPQVVKSE EMSKISSKEP EFTEGKDMEE MEIP--EKSV DNQVLENNRG bmy_00344T0/1-1379 RSPPQVVKSE ETSKISSKEP EFTEGKDIEE MEIP--EKSV DNQIQENNRG BACU013913/1-1487 RSPPQVVKSE ETSKISSKEP EFTEGKDIEE MEIP--EKSV DNQIQENNRG ENSTTRP00000006043/1-1444 RSPPQVVKSE ETSKISSKEP EFTEGKDIEE MEIP--EKSV DNQIQENNRG 251 300 ENSBTAP00000043452/1-1404 GPVFHFASCI ---------- ---------- ----ISPWSI --EDGSKGRS ENSP00000282406/1-1493 QRTLHQTPCG SEQNRKTRTS FATDGGISQN SGAPVSDWSS DEEDGSKGRS bmy_00344T0/1-1379 QRTLHQVPCV SEQNQKTRTS FVTDGGISQN SGAPGSDWSS DEDDGSKGRS BACU013913/1-1487 QRTLHQVPCV SEQNQKTRTS FVTDGGISQN SGAPGSDWSS DEDDGSKGRS ENSTTRP00000006043/1-1444 QRTLHQVPCV SEQNQKTRTS FVTDGGISQN SGAPGSDWSS DEDDGGKGRS 301 350 ENSBTAP00000043452/1-1404 KSRYTSTLSS HTSEEGVQSS RMGR------ ---------- ---------- ENSP00000282406/1-1493 KSRCTSTLSS HTSEEGVQCS RMGSEMYLTA SDDSSSIFEE ETFGIKRPEH bmy_00344T0/1-1379 KSRYTSTLSS HTSEEGVQCS RMGSETYLTA SDDSSSIFEE ETFGIKRPEH BACU013913/1-1487 KSRYTSTLSS HTSEEGVQCS RMGSETYLTA SDDSSSIFEE ETFGIKRPEH ENSTTRP00000006043/1-1444 KSRYTSTLSS HTSEEGVQCS RMGSETYLTA SDDSSSIFEE ETFGIKRPEH 351 400 ENSBTAP00000043452/1-1404 ---------- ---------- KGNSESRKKE RDSSSDELNK KFQSQRLDYS ENSP00000282406/1-1493 KKLYSWQQEA QWKALNSPLG KGNSELSKKE QDSSSDELNK KFQSQRLDYS bmy_00344T0/1-1379 KKLYSWQQEA QW----SPLG KGNSESSKKE HDSSSDELNK KFQSQRLDYS BACU013913/1-1487 KKLYSWQQEA QW----SPLG KGNSESSKKE HDSSSDELNK KFQSQRLDYS ENSTTRP00000006043/1-1444 KKLYSWQQEA QW----SPLG KGNSESSKKE HDSSSDELNK KFQSQRLDYS 401 450 ENSBTAP00000043452/1-1404 SSSSEANTPS PILTPALSPK HPNPLLGKGT ELGPSSTLPP PKLRIPNIFS ENSP00000282406/1-1493 SSSSEANTPS PILTPALMPK HPNSLSGKGT QLVPSSHLPP PKLRIPNVFS bmy_00344T0/1-1379 SSSSEANTPS PILTPALSPK HPNSLPGKGT ELAPPSNLPL PKLRVPNVFS BACU013913/1-1487 SSSSEANTPS PILTPALSPK HPNSLPGKGT ELVPPSNLPL PKLRVPNVFS ENSTTRP00000006043/1-1444 SSSSEANTPS PILTPALSPK HPNSLTGKGT ELVPPSSLPL PKLRVPNVFS 451 500 ENSBTAP00000043452/1-1404 LSIALAKRHL SQPQLSSDRM FGTNRNAISM IRPLRPQETD LDLVDGDNTE ENSP00000282406/1-1493 ISVALAKRHL SQPQLSSDRM FGTNRNAISM IRPLRPQETD LDLVDGDSTE bmy_00344T0/1-1379 LSVALAKRHL SQPQLSSDRM FGTNRNAISM IRPLRPQETD LDLVDGDSTE BACU013913/1-1487 LSVALAKRHL SQPQLSSDRM FGTNRNAISM IRPLRPQETD LDLLDGDSTE ENSTTRP00000006043/1-1444 LSVALAKRHL SQPQLSSDRM FGTNRNAISM IRPLRPQETD LDLVDGDSTE 501 550 ENSBTAP00000043452/1-1404 ILETMDTNCD DGLFSYDCLE SPCSEDQEAC DSAKKAACGK PPTPPLHRFP ENSP00000282406/1-1493 VLENMDTSCD DGLFSYDSLD SPNSDDQEHC DSAKKVAYSK PPTPPLHRFP bmy_00344T0/1-1379 ILETMDTSCD DGLFSYDSLE SPCSDDQETC DSAKKAACGK PPTPPLHRF- BACU013913/1-1487 ILETMDTSCD DGLFSYDSLE SPCSDDQETR DSAKKAACGK PPTPPLHRFP ENSTTRP00000006043/1-1444 ILETMDTSCD DGLFSYGSLE SPCSDDQETC NSAKKAACGK PPTPPLHRFP 551 600 ENSBTAP00000043452/1-1404 SWESRIYAVA KSGIRMSEAF NMENVHKNSV AVLSYTTSGL YTSLIYKNMT ENSP00000282406/1-1493 SWESRIYAVA KSGIRMSEAF NMESVNKNSA ATLSYTTSGL YTSLIYKNMT bmy_00344T0/1-1379 ---------- ---------- --------CC SAFLYHIRTL YITDI-QEYD BACU013913/1-1487 SWESRIYAVA KSGIRMSEAF NMENVNKNSV AVLSYTTSGL YTSLIYKNMT ENSTTRP00000006043/1-1444 SWXXXXXXXX XXXXXXXEAF NMENVNKNSV AVLSYTTSGL YTSLIYKNMT 601 650 ENSBTAP00000043452/1-1404 TPVYTTLKGK ATQISSSPFL DESSGSEEED SSRSSSRTSE SDSRSRSGPG ENSP00000282406/1-1493 TPVYTTLKGK ATQISSSPFL DDSSGSEEED SSRSSSRTSE SDSRSRSGPG bmy_00344T0/1-1379 NP------SK ATQISSNPFL DDSSGSEEED SSRSSSRTSE SDSRSRSGPG BACU013913/1-1487 APVYTTLKGK ATQISSNPFL DDSSGSEEED SSRSSSRTSE SDSRSRSGPG ENSTTRP00000006043/1-1444 TPVYTTLKGK ATQISSNPFL DDSSGSEEED SSRSSSRTSE SDSRSRSGPG 651 700 ENSBTAP00000043452/1-1404 SPRALKRGVS LSSVASESDY AIPPDAYSTD LEYSQPEQKL LKTCSSSSDN ENSP00000282406/1-1493 SPRAMKRGVS LSSVASESDY AIPPDAYSTD TEYSQPEQKL PKTCSSSSDN bmy_00344T0/1-1379 SPRAMKRGVS LSSVASESDY AIPPDAYSTD LECSQPEQKL PKTCSSSSDN BACU013913/1-1487 SPRAMKRGVS LSSVASESDY ALPPDAYSPD LECSQPEQKL PKTCSSSSDN ENSTTRP00000006043/1-1444 SPRAMKRGVS LSSVASESDY AIPPDAYSTD VECSQPEQKL PKTCSSSSDN 701 750 ENSBTAP00000043452/1-1404 GKNEPLEKSG YLLKMSGKVK TWKRRWFVLK GGELLYYKSP SDVIRKPQGH ENSP00000282406/1-1493 GKNEPLEKSG YLLKMSGKVK SWKRRWFVLK GGELLYYKSP SDVIRKPQGH bmy_00344T0/1-1379 GKNEPLEKSG YLLKMSGKVK TWKRRWFVLK GGELLYYKSP SDVIRKPQGH BACU013913/1-1487 GKNEPLEKSG YLLKMSGKVK TWKRRWFVLK GGELLYYKSP SDVIRKPQGH ENSTTRP00000006043/1-1444 GKNEPLEKSG YLLKMSGKVK TWKRRWFVLK GGELLYYKSP SDVIRKPQGH 751 800 ENSBTAP00000043452/1-1404 IELSASCSIL RGDNKQTVQL TTEKHTYYLT ADSPNILEEW IKVLQNVLRV ENSP00000282406/1-1493 IELSASCSIL RGDNKQTVQL TTEKHTYYLT ADSPNILEEW IKVLQNVLRV bmy_00344T0/1-1379 IELSASCSIL RGDNKQTVQL TTEKHTYYLT ADSPNILEEW IKVLQNVLRV BACU013913/1-1487 IELSASCSIL RGDNKQTVQL TTEKHTYYLT ADSPNILEEW IKVLQNVLRV ENSTTRP00000006043/1-1444 IELSASCSIL RGDNKQTVQL TTEKHTYYLT ADSPNILEEW IKVLQNVLRV 801 850 ENSBTAP00000043452/1-1404 QAANPLFLQP EGKPTVKGLL TKVKHGYSKR VWCKLIGKTL YYFRSQEDKF ENSP00000282406/1-1493 QAANPLSLQP EGKPTMKGLL TKVKHGYSKR VWCTLIGKTL YYFRSQEDKF bmy_00344T0/1-1379 QAANPLFLQP EGKPTVKGLL TKVKHGYSKR VWCTLIGKTL YYFRSQEDKF BACU013913/1-1487 QAANPLFLQP EGKPTVKGLL TKVKHGYSKR VWCTLIGKTL YYFRSQEDKF ENSTTRP00000006043/1-1444 QAANPLFLQP EGKPTVKGLL TKVKHGYSKR VWCTLIGKTL YYFRSQEDKF 851 900 ENSBTAP00000043452/1-1404 PLGQIKLWEA KVEEVDRSCD SDEDYEASGR SLLSTHYTIV IHPKDQGPTY ENSP00000282406/1-1493 PLGQIKLWEA KVEEVDRSCD SDEDYEASGR SLLSTHYTIV IHPKDQGPTY bmy_00344T0/1-1379 PLGQIKLWEA KVEEVDRSCD SDEDYEASGR SLLSTHYTIV IHPKDQGPTY BACU013913/1-1487 PLGQIRLWEA KVEEVDRSCD SDEDYEASGR SLLSTHYTIV IHPKDQGPTY ENSTTRP00000006043/1-1444 PLGQIRLWEA KVEEVDRSCD SDEDYEASGR SLLSTHYTIV IHPKDQGPTY 901 950 ENSBTAP00000043452/1-1404 LLIGSKHEKD TWLYHLTVAA GSNNVNVGSE FEQLVCKLLN IEGEPSSQIW ENSP00000282406/1-1493 LLIGSKHEKD TWLYHLTVAA GSNNVNVGSE FEQLVCKLLN IDGEPSSQIW bmy_00344T0/1-1379 LLIGSKHEKD TWLYHLTVAA GSNNVNVGSE FEQLVCKLLN IEGEPSSQIW BACU013913/1-1487 LLIGSKHEKD TWLYHLTVAA GSNNVNVGSE FEQLVCKLLN IEGEPSSQIW ENSTTRP00000006043/1-1444 LLIGSKHEKD TWLY-LTVAA GSNNVNVGSE FEQLVCKLLN IEGEPSSQIW 951 1000 ENSBTAP00000043452/1-1404 RHPTLCHSKE GIISPLTTLP SEALQTEAIK LFKTCQLFIN AAVDSPAIDY ENSP00000282406/1-1493 RHPTLCHSKE GIISPLTTLP SEALQTEAIK LFKTCQLFIN AAVDSPAIDY bmy_00344T0/1-1379 RHPTLCHSKE GLISPLTTLP SEALQTEAIK LFKTCQLFIN AAVDSPAIDY BACU013913/1-1487 RHPTLCHSKE GLISPLTTLP SEALQTEAIK LFKTCQLFIN AAVDSPAIDY ENSTTRP00000006043/1-1444 RHPTLCHSKE GLISPLTTLP SEALQTEAIK LFKTCQLFIN AAVDSPAIDY 1001 1050 ENSBTAP00000043452/1-1404 HISLAQSALQ ICLTHPELQN EICCQLIKQT RWRQPQNQPG PLQGW--QLL ENSP00000282406/1-1493 HISLAQSALQ ICLTHPELQN EICCQLIKQT RRRQPQNQPG PLQGW--QLL bmy_00344T0/1-1379 HISLAQSALQ ICLTHPELQN EIC------- ---------- ----WLAALS BACU013913/1-1487 HISLAQSALQ ICLTHPELQN EICCQLIKQT RRRQPQNQPG PLQGW--QLL ENSTTRP00000006043/1-1444 HISLAQSALQ ICLTHPELQN EICCQLIKQT RRRQPQNQPG PLQGW--QLL 1051 1100 ENSBTAP00000043452/1-1404 ALCVGLFLPH HPFLWLLRLH LKRNADSRTE FGKYAIYC-- QRCVERTQQN ENSP00000282406/1-1493 ALCVGLFLPH HPFLWLLRLH LKRNADSRTE FGKYAIYC-- QRCVERTQQN bmy_00344T0/1-1379 ALCWALPSP- SPF------P VAPQAPPKEE -------CRF QRCVERTQQN BACU013913/1-1487 ALCVGLFLPH HPFLWLLRLH LKRNADSRTE FGKYAIYC-- QRCVERTQQN ENSTTRP00000006043/1-1444 ALCVGLFLPH HPFLWLLRLH LKRNADSRTE FGKYAIYC-- QRCVERTQQN 1101 1150 ENSBTAP00000043452/1-1404 GDREARPSRM EILSTLLRNP YHHSLPFSIP VHFMNGIYQV VGFDASTTVE ENSP00000282406/1-1493 GDREARPSRM EILSTLLRNP YHHSLPFSIP VHFMNGIYQV VGFDASTTVE bmy_00344T0/1-1379 GDREARPSRM EILSTLLRNP YHHSLPFSIP VHFMNGIYQV VGFDASTTVE BACU013913/1-1487 GDREARPSRM EILSTLLRNP YHHSLPFSIP VHFMNGIYQV VGFDASTTVE ENSTTRP00000006043/1-1444 GDREARPSRM EILSTLLRNP YHHSLPFSIP VHFMNGIY-V VGFDASTTVE 1151 1200 ENSBTAP00000043452/1-1404 EFLNTLNQDT GMRKPAQSGF ALFTDDPSGR DLEHCLQGNI KICDIISKWE ENSP00000282406/1-1493 EFLNTLNQDT GMRKPAQSGF ALFTDDPSGR DLEHCLQGNI KICDIISKWE bmy_00344T0/1-1379 EFLNTLNQDT GMRRPAQSGF ALFTDDPSGR DLEHCLQGNI KICDIISKWE BACU013913/1-1487 EFLNTLNQDT GMRRPAQSGF ALFTDDPSGR DLEHCLQGNI KICDIISKWE ENSTTRP00000006043/1-1444 EFLNTLNQDT GMRRPAQSGF ALFTDDPSGR DLEHCLQGNI KICDIISKWE 1201 1250 ENSBTAP00000043452/1-1404 QASKEQQPGK WEGTRTVRLT YKNRLYFSMQ VRGETDREKL LLMYQTNDQI ENSP00000282406/1-1493 QASKEQQPGK CEGTRTVRLT YKNRLYFSVQ ARGETDREKL LLMYQTNDQI bmy_00344T0/1-1379 QASKEQQPGK WEGTRTVRLT YKNRLYFSMQ ARGETDREKL LLMYQTNDQI BACU013913/1-1487 QASKEQQPGK WEGTRTVRLT YKNRLYFSMQ ARGETDREKL LLMYQTNDQI ENSTTRP00000006043/1-1444 QASKEQQPGK WEGTRTVRLT YKNRLYFSMQ ARGETDREKL LLMYQTNDQI 1251 1300 ENSBTAP00000043452/1-1404 VNGLFPLNRD LALEMAALLA QVEIGDFERP FSTPAGHVTN QCKANQTLKQ ENSP00000282406/1-1493 INGLFPLNKD LALEMAALLS QVEIGDFERP FSTPAGHVTN QCKVNQTLKQ bmy_00344T0/1-1379 VNGLFPLNRD LALEMAALLA QVEIGDFERP FSTPAGHVTN QCKANQTIKQ BACU013913/1-1487 VNGLFPLNRD LALEMAALLA QVEIGDFERP FSTPAGHVTN HCKANQTIKQ ENSTTRP00000006043/1-1444 VNGLFPLNRD LALEMAALLA QVEIGDFERP FSTPAGHVTS QCKANQTIKQ 1301 1350 ENSBTAP00000043452/1-1404 AIEKFYPKRY RDDSSEEQLR QLCQRLSTRW MALRGHSAAD CVRIYLTVAR ENSP00000282406/1-1493 VIEKFYPKRY RDGCSEEQLR QLCQRLSTRW MALRGHSAAD CVRIYLTVAR bmy_00344T0/1-1379 LIEKFYPKRY RDDSSEEQLR QLCQRLSTRW MALRGHSAAD CVRIYLTVAR BACU013913/1-1487 LIEKFYPKRY RDDSSEEQLR QLCQRLSTRW MALRGHSAAD CVRIYLTVAR ENSTTRP00000006043/1-1444 LIEKFYPKRY RDDSSEEQLR QLCQRLSTRW MALRGHSAAD CVRIYLTVAR 1351 1400 ENSBTAP00000043452/1-1404 KWPFFGAKLF LAKPITPSSL GSTFMWLAVH EDGLSILEYN SMRLIVSYVY ENSP00000282406/1-1493 KWPFFGAKLF LAKPITPSSL GSTFLWLAVH EDGLSLLEYN SMRLIVSYVY bmy_00344T0/1-1379 KWPFFGAKLF LAKPXTPSSL GSTFMWLAIH EDGLSILEYN SMRLIISYVY BACU013913/1-1487 KWPFFGAKLF LAKPITPSSL GSTFMWLAIH EDGLSILEYN SMRLIISYVY ENSTTRP00000006043/1-1444 KWPFFGAKLF LAKPITPSSL GSTFMWLAIH EDGLSILEYN SMRLIISYVY 1401 1450 ENSBTAP00000043452/1-1404 KSLMTFGGYQ DDFMVVINNA HSKDKPTEKL IFAMAKPKIL EITLLIASYI ENSP00000282406/1-1493 KSLMTFGGYQ DDFMVVINNT HSKDKPTEKL LFAMAKPKIL EITLLIASYI bmy_00344T0/1-1379 KSLMTFGGYQ DDFMIVINNA HSKDKPTEKL LFAMAKPKIL EITLLIASYI BACU013913/1-1487 KSLMTFGGYQ DDFMIVINNA HSKDKPTEKL LFAMAKPKIL EITLLIASYI ENSTTRP00000006043/1-1444 KSLMTFGGYQ DDFMIVINNA HSKDKPTEKL LFAMAKPKXX XXXXXXXXXX 1451 1500 ENSBTAP00000043452/1-1404 NNFYQQKAV- HHLSAPALLS AQTQGCQARV MGSQPLLANS RPTKGPTLL ENSP00000282406/1-1493 NNFHQQKAAF HHLSAPALLS AQTRGPQARM MGSQPLLSSS RPTKGPTLL bmy_00344T0/1-1379 NNFYQQKAV- HHLSAPALLS ARTQGPQARV MGSQPLLS-S RPTKGPTLL BACU013913/1-1487 NNFYQHKAV- HHLSAPALLS ARTQGPQARV MGSQPLLS-S RPTKGPTLL ENSTTRP00000006043/1-1444 XNFYQQKVV- HHLSAPALLS ARTQGPQARV MGSQPILS-S RPTKGPTLL