KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:54:45 2014 Check: 00 .. Name: ENSBTAP00000043469/1-1482 Len: 1575 Check: 7896 Weight: 1.00 Name: ENSP00000348089/1-1493 Len: 1575 Check: 4425 Weight: 1.00 Name: bmy_04275T0/1-1062 Len: 1575 Check: 4330 Weight: 1.00 Name: BACU007604/1-1485 Len: 1575 Check: 5875 Weight: 1.00 Name: ENSTTRP00000013957/1-1483 Len: 1575 Check: 3186 Weight: 1.00 // 1 50 ENSBTAP00000043469/1-1482 MPNERIPHSS QTQEPDCSRS QDVSGSEEGT IKQEKDGDMD LGQSLPSCSS ENSP00000348089/1-1493 MPNEGIPHSS QTQEQDCLQS QPVSNNEEMA IKQESGGDGE VEEYLSFRSV bmy_04275T0/1-1062 ---------- ---------- ---------- ---------- ---------- BACU007604/1-1485 MPNERIPHSS QTQEQDCSQS QDISESAEGT IKQENDGYVE LGESLPSCFP ENSTTRP00000013957/1-1483 MPNERIPHSS QTQEQDCSQN QDISESAEGT VKQENDGDVE LGESLPSCSP 51 100 ENSBTAP00000043469/1-1482 ANGPSTSTEG CLLELPRRGP ALLHIDRHQI QAVEPGAQAL ELQGLGVDVY ENSP00000348089/1-1493 GDGLSTSAVG CASAAPRRGP ALLHIDRHQI QAVEPSAQAL ELQGLGVDVY bmy_04275T0/1-1062 ---------- ---------- ---------- ---------- ---------- BACU007604/1-1485 ANGPSTSAKG YPSELPRRGP ALLHIDRHQI QAVEPSAQAL ELQGLGVDVY ENSTTRP00000013957/1-1483 ANGPSTSAKG YPSELPRRGP ALLHINRHQI QAVEPSAQAL ELQGLGVDVY 101 150 ENSBTAP00000043469/1-1482 DQDVLEQGVL QQVDSAIHEA SCVAQLAEAE KEYRSVLDDL TSCTTSLRQI ENSP00000348089/1-1493 DQDVLEQGVL QQVDNAIHEA SRASQLVDVE KEYRSVLDDL TSCTTSLRQI bmy_04275T0/1-1062 ---------- ---------- ---------- ---------- ---------- BACU007604/1-1485 DQDVLEQGVL QQVDSAIHEA SCVAQLADVE KEYRSVLDDL TSCTTSLRQI ENSTTRP00000013957/1-1483 DQDVLEQGVL QQVDSAIHEA SRVAQLADAE KEYQSVLDDL MSCTTSLRQI 151 200 ENSBTAP00000043469/1-1482 DKIIEQLGPQ AATNKDINRK LDSVKRQKYN KEQQLKKITA KQKRLQAVLG ENSP00000348089/1-1493 NKIIEQLSPQ AATSRDINRK LDSVKRQKYN KEQQLKKITA KQKHLQAILG bmy_04275T0/1-1062 ---------- ---------- ---------- ---------- ---------- BACU007604/1-1485 NKIIEQLSPQ AATNKDINRK LDSVKRQKYN KEQQLKKITA KQKHLQAILR ENSTTRP00000013957/1-1483 NKIIEQLSPQ ADTNKDINRK LDSVKRQKYN KEQQLKKITA KQKRLQAILG 201 250 ENSBTAP00000043469/1-1482 GAEVQVELGL GGLEEEDAEA EPSCLGSMLM PAQETAWEEL VRTGQMTPFG ENSP00000348089/1-1493 GAEVKIELDH ASL-EEDAEP GPSSLGSMLM PVQETAWEEL IRTGQMTPFG bmy_04275T0/1-1062 ---------- ---------- ---------- ---------- ---------- BACU007604/1-1485 GAEVKVELDH ASLEEEDAEA GPSCLGSMLM PAQETAWEEL VRTGQMTPFG ENSTTRP00000013957/1-1483 GAEVKVELDH ASLEEEDAEA EPSSLGSMLM PAQETAWEEL VRTGQMTPFG 251 300 ENSBTAP00000043469/1-1482 TKIPQKQEKK PRKLMLNEAS GFEKYLADQA KLSFERKKQA CNKRAAKKAS ENSP00000348089/1-1493 TQIPQKQEKK PRKIMLNEAS GFEKYLADQA KLSFERKKQG CNKRAARKAP bmy_04275T0/1-1062 ---------- ---------- ---------- ---------- ---------- BACU007604/1-1485 TQIPQKQEKK PRKLMLNETS DFEKYLADQA KLSFERKKQA CNKRATKKAP ENSTTRP00000013957/1-1483 TQIPQKQERK PRKLMLNEAS DFEKYLADQA KLSFERKKQA CNKRATKKAP 301 350 ENSBTAP00000043469/1-1482 ASATSEPSSA LNENKPDERG KAVSKTDKRL KKQIKKLQKR ALQLQGQVGL ENSP00000348089/1-1493 APVTP-PAPV QNKNKPNKKA RVLSKKEERL KKHIKKLQKR ALQFQGKVGL bmy_04275T0/1-1062 ---------- ---------- ---------- ---------- ---------- BACU007604/1-1485 ALVTSELSST LNENKPDKRG KVLSKTDKRL KKHIKKLQKR ALQFQGQVGL ENSTTRP00000013957/1-1483 ASVTSELSST LSENKPDKRG KVLSKTDERL KKHIKKLQKR ALQFQGQVGL 351 400 ENSBTAP00000043469/1-1482 LKGKKPWDCD VRPNAQGDSE DEESEYLPTE EELE------ ETVGADLPGE ENSP00000348089/1-1493 PKARRPWESD MRPEAEGDSE GEESEYFPTE EEEEEEDDEV EGAEADLSGD bmy_04275T0/1-1062 ---------- ---------- ---------- ---------- ---------- BACU007604/1-1485 LKGKKPLECD VRPKAEGDSE GEESEYLPTE EELE------ EAAGADLSGE ENSTTRP00000013957/1-1483 LKGKKPLECD VRPKAEGDSE DEVSEYLPTE WEQG------ EAAGTDLSGE 401 450 ENSBTAP00000043469/1-1482 GSDWEQRLVL NRRKRQKKVT VQEIDDDFFP SSGEEAEATG ------GGRK ENSP00000348089/1-1493 GTDYELKPLP KGGKRQKKVP VQEIDDDFFP SSGEEAEAAS VGEGGGGGRK bmy_04275T0/1-1062 ---------- ---------- ---------- ---------- ---------- BACU007604/1-1485 GTDCDRRLVL RRQKRQKKVT VQETDDDFFP SSGEEAEAAG ---GGGGGRK ENSTTRP00000013957/1-1483 DTDCDRRRVL SRQKRQKKVT VQEIDDDFFP SSGEEAEAAG ---GGGGGRK 451 500 ENSBTAP00000043469/1-1482 VVRCRDDGDE DYYKQRLSRW SITRLKQDKA SLPWLDDITN SMDMNLSHGV ENSP00000348089/1-1493 VGRYRDDGDE DYYKQRLRRW NKLRLQDKEK RLK-LEDDSE ESDAEFDEGF bmy_04275T0/1-1062 ---------- ---------- ---------- ---------- ---------- BACU007604/1-1485 EVRCRDDGDE DYYKQRLRRW NKLRLQDKEK SLR-LEDDSE ESDAEFDEGF ENSTTRP00000013957/1-1483 VVRCRDDGDE DYYKQRLRRW NKLRLQDKEK SLR-LEDDSE ESDAEFDEGF 501 550 ENSBTAP00000043469/1-1482 RMPKIMRKSL YKYREKDNVF PGDIRCAQGA WELGDSTGHA DAQRILAFLM ENSP00000348089/1-1493 KVPGFLFKKL FKYQQTGVRW LWELHCQQAG GILGDEMGLG KTIQIIAFLA bmy_04275T0/1-1062 --------MI TKYQQTGVRW LWELHCQQAG GILGDEMGLG KTIQIIAFLA BACU007604/1-1485 KVPGFLFKKL FKYQQTGVRW LWELHCQQAG GILGDEMGLG KTIQIIAFLA ENSTTRP00000013957/1-1483 KVPGFLFKKL FKYQQTGVRW LWELHCQQAG GILGDEMGLG KTIQIIAFLA 551 600 ENSBTAP00000043469/1-1482 ---------- ---KTSFKRL RVRGVYALFE GLGPTIIVCP ---------- ENSP00000348089/1-1493 ---------- ---GLSYSKI RTRGSNYRFE GLGPTVIVCP ---------- bmy_04275T0/1-1062 VGDIKGKFLR DSGAVGQEKL NMRPGEH-YN ELG--VLLCV YVRKKNSQMN BACU007604/1-1485 ---------- ---GLSYSKI RTRGSNYRFE GLGPTIIVCP ---------- ENSTTRP00000013957/1-1483 ---------- ---GLSYSKI RTRGSNYRFE GLGPTIIVCP ---------- 601 650 ENSBTAP00000043469/1-1482 ---------- ------TTVM HQWVKEFHTW --WPAFR--- ---------- ENSP00000348089/1-1493 ---------- ------TTVM HQWVKEFHTW --WPPFR--- ---------- bmy_04275T0/1-1062 SQTKFCMNRH CFMGYLIIHM LSFMVVFSSW TFWVQVRGVG SDYNCLSDDS BACU007604/1-1485 ---------- ------TTVM HQWVKEFHTW --WPPFR--- ---------- ENSTTRP00000013957/1-1483 ---------- ------TTVM HQWVKEFHTW --WPPFR--- ---------- 651 700 ENSBTAP00000043469/1-1482 ---------- VAVLHETGSF THK------- -------KEK LVRDIARCHG ENSP00000348089/1-1493 ---------- VAILHETGSY THK------- -------KEK LIRDVAHCHG bmy_04275T0/1-1062 DASVGEGISH VVASIQSGSS ARNWVLYPQK VLQSITFLEK LIQDIAHCHG BACU007604/1-1485 ---------- VAVLHETGSF THK------- -------KEK LIQDIAHCHG ENSTTRP00000013957/1-1483 ---------- VAVLHETGSF SHK------- -------KEK LIRDIAHCHG 701 750 ENSBTAP00000043469/1-1482 ILITSYSYIR LMQDDISRHD WHYVILDEGH KIRNPNAAVT LACKQFRTPH ENSP00000348089/1-1493 ILITSYSYIR LMQDDISRYD WHYVILDEGH KIRNPNAAVT LACKQFRTPH bmy_04275T0/1-1062 ILITSYSYVR LMQDDISRHD WHYVILDEGH KIRNPNAAIT LACKQFRTPH BACU007604/1-1485 ILITSYSYVR LMQDDISRHD WHYVILDEGH KIRNPNAAIT LACKQFRTPH ENSTTRP00000013957/1-1483 ILITSYSHVR LMQDDISRHD W-YVILDEGN K-RNPNAAIT LACKQFRTPH 751 800 ENSBTAP00000043469/1-1482 RIILSGSPMQ NNLRELWSLF DFIFPGKLGT LPVFMEQFSV PITMGGYSNA ENSP00000348089/1-1493 RIILSGSPMQ NNLRELWSLF DFIFPGKLGT LPVFMEQFSV PITMGGYSNA bmy_04275T0/1-1062 RIILSGSPMQ NNLRELWSLF DFIFPGKLGT LPVFMEQFSV PITMGGYSNA BACU007604/1-1485 RIILSGSPMQ NNLRELWSLF DFIFPGKLGT LPVFMEQFSV PITMGGYSNA ENSTTRP00000013957/1-1483 RIILSGSPMQ NNLRELWSLF DFIFPGKLGT LPVFMEQFSV PITMGGYSNA 801 850 ENSBTAP00000043469/1-1482 SPVQVKTAYK CACVLRDTIN PYLLRRMKSD VKMSLSLPDK NEQVLFCRLT ENSP00000348089/1-1493 SPVQVKTAYK CACVLRDTIN PYLLRRMKSD VKMSLSLPDK NEQVLFCRLT bmy_04275T0/1-1062 SPVQVKTAYK CACVLRDTIN PYLLRRMKSD VKMSLSLPDK NEQVLFCRLT BACU007604/1-1485 SPVQVKTAYK CACVLRDTIN PYLLRRMKSD VKMSLSLPDK NEQVLFCRLT ENSTTRP00000013957/1-1483 SPVQVKTAYK CACVLRDTIN PYLLRRMKSD VKMSLSLPDK NEQVLFCRLT 851 900 ENSBTAP00000043469/1-1482 DEQHKVYQNF IDSKEVYRIL NGEMQIFSGL VALRKICNHP DLFSGGPKNL ENSP00000348089/1-1493 DEQHKVYQNF VDSKEVYRIL NGEMQIFSGL IALRKICNHP DLFSGGPKNL bmy_04275T0/1-1062 DEQHKVYQNF IDSKEVYRIL NGEMQIFSGL VALRKICNHP DLFSGGPKNL BACU007604/1-1485 DEQHKVYQNF IDSKEVYRIL NGEMQIFSGL VALRKICNHP DLFSGGPKNL ENSTTRP00000013957/1-1483 DEQHKVYQNF IDSKEVYRIL NGEMQIFSGL VALRKICNHP DLFSGGPKNL 901 950 ENSBTAP00000043469/1-1482 KGIPDEELGE DQFGYWKRSG KMIVVESLLK IWHKQGQRVL LFSQSRQMLD ENSP00000348089/1-1493 KGLPDDELEE DQFGYWKRSG KMIVVESLLK IWHKQGQRVL LFSQSRQMLD bmy_04275T0/1-1062 KGIPDDELGE DQFGHWKRSG KMIVVESLLK IWHKQGQRVL LFSQSRQMLD BACU007604/1-1485 KGIPDDELGE DQFGHWKRSG KMIVVESLLK IWHKQGQRVL LFSQSRQMLD ENSTTRP00000013957/1-1483 KGIPDEELEE DQFGHWKRSG KMIVVESLLK IWHKQGQRVL LFSQSRQMLD 951 1000 ENSBTAP00000043469/1-1482 ILEVFLRAQK YSYLKMDGTT AIASRQPLIT RYNEDTSIFV FLLTTRVGGL ENSP00000348089/1-1493 ILEVFLRAQK YTYLKMDGTT TIASRQPLIT RYNEDTSIFV FLLTTRVGGL bmy_04275T0/1-1062 IFEVFLRVQK YSYLKMDGTT AIASRQPLIT RYNEDTSIFV FLLTTRVGGL BACU007604/1-1485 IFEVFLRAQK YSYLKMDGTT AIASRQPLIT RYNEDTSIFV FLLTTRVGGL ENSTTRP00000013957/1-1483 IFEVFLRAQK YSYLKMDGTT AIASRQPLIT RYNEDTSIFV FLLTTRVGGL 1001 1050 ENSBTAP00000043469/1-1482 GVNLTGANRV IIYDPDWNPS TDTQARERAW RIGQKKQVTV YRLLTAGTIE ENSP00000348089/1-1493 GVNLTGANRV VIYDPDWNPS TDTQARERAW RIGQKKQVTV YRLLTAGTIE bmy_04275T0/1-1062 GVNLTGANRV IIYDPDWNPS TDVQARERAW RIGQKKQVTV YRLLTAGTIE BACU007604/1-1485 GVNLTGANRV IIYDPDWNPS TDVQARERAW RIGQKKQVTV YRLLTAGTIE ENSTTRP00000013957/1-1483 GVNLTGANRV IIYDPDWNPS TDVQARERAW RIGQKKQVTV YRLLTARTIE 1051 1100 ENSBTAP00000043469/1-1482 EKIYHRQIFK QFLTNRVLKD PKQRRFFKSN DLYELFTLSS PDTSQSTETS ENSP00000348089/1-1493 EKIYHRQIFK QFLTNRVLKD PKQRRFFKSN DLYELFTLTS PDASQSTETS bmy_04275T0/1-1062 EKIYHRQIFK QFLTNRVLKD PKQRRFFKSN DLYELFTLTS PDTSQSTETS BACU007604/1-1485 EKIYHRQIFK QFLTNRVLKD PKQRRFFKSN DLYELFTLTS PDTSQSTETS ENSTTRP00000013957/1-1483 EKIYHRQIFK QFLTNRVLKD PKQRRFFKSN DLYELFTLTS PDTSQSTETS 1101 1150 ENSBTAP00000043469/1-1482 AIFAGTGSDV QTPKRHLKRR LQQACGTDQS VPVDRQFPDC KTSASAAMSS ENSP00000348089/1-1493 AIFAGTGSDV QTPKCHLKRR IQPAFGADHD VPKRKKFPAS NISVNDATSS bmy_04275T0/1-1062 AIFAGTGSDV QTPKRHLKRK LQLAFGTDQN IPVGKKFPGS NTSANVATSS BACU007604/1-1485 AIFAGTGSDV QTPKRHLKRK LQLAFGTDQN IPVGKKFPGS NTSANVATSS ENSTTRP00000013957/1-1483 AIFAGTGSDV QTPKRRLKRK LQPAFGTDQN VPVGKKFPDS NTSANVAMSS 1151 1200 ENSBTAP00000043469/1-1482 EEVCAASVSE VNAVTSDQGI PLNDAVQTPH SLTSSERLGE EADAVSRPRE ENSP00000348089/1-1493 EEKSEAKGAE VNAVTSNRSD PLKDDPHMSS NVTSNDRLGE ETNAVSGPEE bmy_04275T0/1-1062 EEKSTAIGPE VNAVTSNLGD PLKDAPQTSC SLTNSERLGE ETDAVSRLQD BACU007604/1-1485 EEKSTAIGPE VNAVTSNLGD PLKDAPQTSC SLTNSERLGE ETDAVSRLQD ENSTTRP00000013957/1-1483 EEKSTTRGPE VNAVTSNLGD PLKDAPQTSC SLTNSERLGE ETDAVSRLQD 1201 1250 ENSBTAP00000043469/1-1482 SSVIHGNGNS SDSPRVSRTC GVSGEESVSE KESLSDKRE- SCQVQREALW ENSP00000348089/1-1493 LSVISGNGEC SNSSGTGKTS MPSGDESIDE KLGLSYKRER PSQAQTEAFW bmy_04275T0/1-1062 SSVIHGNREG SDSPRISKMY RMSGEESIDE KEGLSDKRE- SCRVQTEPLW BACU007604/1-1485 SSVIHGNGEG SDSPRISKMY RMSGEESIDE KEGLSDKRE- SFRVQTEPLW ENSTTRP00000013957/1-1483 SSVIHGNGEG SDSPRISKMY RMSGEESIDE KEGLSDKRE- SCRVQTEPLW 1251 1300 ENSBTAP00000043469/1-1482 ENEQTENNFY KHKSKMKHH- VAEE-PMEKH LRPNQKPKSS KHRRDAKFEG ENSP00000348089/1-1493 ENKQMENNFY KHKSKTKHHS VAEEETLEKH LRPKQKPKNS KHCRDAKFEG bmy_04275T0/1-1062 ENEQTENNFY KHKSKTKHH- VAEEKTLEKH LRPKQKLKSS KHRRDAKFEG BACU007604/1-1485 ENEQTENNFY KHKSKMKHH- VAEEKTLEKH LRPKQKLKSS KHRRDAKFEG ENSTTRP00000013957/1-1483 ENEQTENNFY KHKSKTKHH- VAEEKTLEKH LRPKQKLKSS KHRRDAKFEG 1301 1350 ENSBTAP00000043469/1-1482 TRIPHLVKKR QYRRRDPAAE SEAKERSHDD YVLEKLFRKS AGVHSVMKHD ENSP00000348089/1-1493 TRIPHLVKKR RYQKQDSENK SEAKEQSNDD YVLEKLFKKS VGVHSVMKHD bmy_04275T0/1-1062 TRIPHLVKKK QYRRQDNENE SEPKERSHDD XVLEKLFRKS VGVHSIMKHD BACU007604/1-1485 TRIPHLVKKK QYRRQENENE SEPKERSHDD YVLEKLFRKS VGVHSIMKHD ENSTTRP00000013957/1-1483 TRIPHLVKKK QYRRQDNENE SEPKERSHDD YVLEKLFRKS VGVHSIMKHD 1351 1400 ENSBTAP00000043469/1-1482 AIMDGASPDH VLVEAEANRV AQDALRALRL SRQQCLGAAS GVPTWTGHRV ENSP00000348089/1-1493 AIMDGASPDY VLVEAEANRV AQDALKALRL SRQRCLGAVS GVPTWTGHRG bmy_04275T0/1-1062 AIMDGASPDY VLVEAEANRV AQDALKALRH SRQRCLGAAS GVPTWTGHRG BACU007604/1-1485 AIMDGASPDY VLVEAEANRV AQDALKALRL SRQRCLGAAS GVPTWTGHRG ENSTTRP00000013957/1-1483 AIMDGASPDY VLVEAEANRV AQDALKALRL SRQRCLGAAS GVPTWTGHRG 1401 1450 ENSBTAP00000043469/1-1482 LAGAPAGKKS RFGQKRNSSF SVQRPSSTSP KEKCQDSTVK KEGKDHVSEH ENSP00000348089/1-1493 ISGAPAGKKS RFGKKRNSNF SVQHPSSTSP TEKCQDGIMK KEGKDNVPEH bmy_04275T0/1-1062 VAGAPAGRRS RFGQKRNSSF SVQHPSSASP KEKCQDSTMK KDGKDNVSEH BACU007604/1-1485 VAGAPAGRRS RFGQKRNSSF SVQHPSSASP KEKCQDSTMK KDGKDNVSEH ENSTTRP00000013957/1-1483 VAGTPAGRXX XXXXXXXXXX XXXXXXXXXX XXXXXDSTMK KDGKDNVSEH 1451 1500 ENSBTAP00000043469/1-1482 FSGKAEDTES SSGALTSSSL LAKMRARNHL ILPERLESES GRLPEAAAPL ENSP00000348089/1-1493 FSGRAEDADS SSGPLASSSL LAKMRARNHL ILPERLESES GHLQEASALL bmy_04275T0/1-1062 FSGKVEDAEP SSGALTSSSL LAKMRARNHL ILPERLESES GCLPEASAPP BACU007604/1-1485 FSGKVEDAEP SSGALTSSSL LAKMRARNHL ILPERLEGES GCLPEASAPP ENSTTRP00000013957/1-1483 FRGKVEDAEP SSGALTSSSL LAKMRARNHL ILPERLESES GCLPEASAPP 1501 1550 ENSBTAP00000043469/1-1482 PCSTEHDDLL VEMRNFIAFQ AQADGQASTR EILQEFESKL SASQSCVFRE ENSP00000348089/1-1493 P-TTEHDDLL VEMRNFIAFQ AHTDGQASTR EILQEFESKL SASQSCVFRE bmy_04275T0/1-1062 PSSMEHDDLL VEMRNFIAFQ AQVDGQASTR EILQEFESKL SASQSCVFRE BACU007604/1-1485 PSSMEHDDLL VEMRNFIAFR AQVDGQASTR EILQEFESKL SASQSCVFRE ENSTTRP00000013957/1-1483 PSSMEHDDLL VEMRNFIAFQ AQVDGQASTR EILQEFESKL SASQSCVFRE 1551 1600 ENSBTAP00000043469/1-1482 LLRSLCTFHR TSAGEGIWKL KPEYC ENSP00000348089/1-1493 LLRNLCTFHR TSGGEGIWKL KPEYC bmy_04275T0/1-1062 LLRNLCTFHR TSGGEGIWKL KPEYC BACU007604/1-1485 LLRNLCTFHR TSGGEGIWKL KPEYC ENSTTRP00000013957/1-1483 LLRNLCTFHR TSGGEGIWKL KPEYC