KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:54:46 2014 Check: 00 .. Name: ENSTTRP00000012677/1-565 Len: 711 Check: 7761 Weight: 1.00 Name: ENSP00000381844/1-541 Len: 711 Check: 3177 Weight: 1.00 Name: BACU005349/1-616 Len: 711 Check: 8980 Weight: 1.00 Name: bmy_10848T0/1-501 Len: 711 Check: 2872 Weight: 1.00 Name: ENSBTAP00000043475/1-541 Len: 711 Check: 2708 Weight: 1.00 // 1 50 ENSTTRP00000012677/1-565 MGTVGGYPES VGLQFPTDGC PQGAARAWFV PAPSRPSLSS CSFCGGGGSM ENSP00000381844/1-541 ---------- --MLSPQRVA AAASRGADDA MESSKP---- ---------- BACU005349/1-616 ---------- ---------- ---------- MESAKP---- ---------- bmy_10848T0/1-501 ---------- ---------- ---------- MESAKP---- ---------- ENSBTAP00000043475/1-541 ---------- --MLSPQRAV AAASGGAGDA MESGKP---- ---------- 51 100 ENSTTRP00000012677/1-565 LSPQRVVAAA SGGAGDAMES ---GNILLQE HIRDLDVVVV SVAGAFRKGK ENSP00000381844/1-541 -GPVQVVLVQ KDQHSFELDE KALASILLQD HIRDLDVVVV SVAGAFRKGK BACU005349/1-616 -GPVQVVLVQ KDQHAFELEE KALASILLQE HIRDLDVVVV SVAGAFRKGK bmy_10848T0/1-501 -CPVQVVLVQ KDQHAYELEE KALASILLQE HIRDLDVVVV SVAGAFRKGK ENSBTAP00000043475/1-541 -GPVQVVLVQ KDQHSFELEE KALASILLQD HIRELDVVVV SVAGAFRKGK 101 150 ENSTTRP00000012677/1-565 SFFLDFMLRY LYTQKEGGSS NWLGDREEPL TGFSWRGGSD PETTGIQIWS ENSP00000381844/1-541 SFILDFMLRY LYSQKESGHS NWLGDPEEPL TGFSWRGGSD PETTGIQIWS BACU005349/1-616 SFFLDFMLRY LYFQKEGGRS NWLGDPEEPL TGFSWRGGSD PETTGIQIWS bmy_10848T0/1-501 SFFLDFMLRY LYFQKEGGRS NWLGDPEEPL TGFSWRGGSD PETTGIQIWS ENSBTAP00000043475/1-541 SFFLDFMLRY LYFQKEGGHS NWLGDPEEPL TGFSWRGGSD PETTGIQIWS 151 200 ENSTTRP00000012677/1-565 EVFTVEKPDG KMVAVVLMDT QGAFDSQSTV KDCATIFALS TMTSSVQIYN ENSP00000381844/1-541 EVFTVEKPGG KKVAVVLMDT QGAFDSQSTV KDCATIFALS TMTSSVQIYN BACU005349/1-616 EVFTVEKPDG KKVAVVLMDT QGAFDSQSTV KDCATIFALS TMTSSV---- bmy_10848T0/1-501 EVFTVEKPDG KKVAVVLMDT QGAFDSQSTV KDCATIFALS TMTSSV---- ENSBTAP00000043475/1-541 EVFTVEKPGG KKVAVVLMDT QGAFDSQSTV KDCATIFALS TMTSSVQIYN 201 250 ENSTTRP00000012677/1-565 LSQNIQEDDL QQLQLFTEYG RLAMDEIFQK PFQTLMFLVR DWSFPYEYNY ENSP00000381844/1-541 LSQNIQEDDL QQLQLFTEYG RLAMDEIFQK PFQTLMFLVR DWSFPYEYSY BACU005349/1-616 ---------- ---QLFTEYG RLAMDEIFQK PFQTLMFLVR DWSFPYEYNY bmy_10848T0/1-501 ---------- ---------- ---------- --QTLMFLVR DWSFPYEYNY ENSBTAP00000043475/1-541 LSQNIQEDDL QQLQLFTEYG RLAMDEIFQK PFQTLMFLVR DWSFPYEYNY 251 300 ENSTTRP00000012677/1-565 GLQGGMSFLE KRLQVKEHQH EEIQNVRNHI HSCFSSVTCF LLPHPGLQVA ENSP00000381844/1-541 GLQGGMAFLD KRLQVKEHQH EEIQNVRNHI HSCFSDVTCF LLPHPGLQVA BACU005349/1-616 GLQGGMSFLE KRLQVKEHQH EEIQNVRNHI HSCFSSVTCF LLPHPGLQVA bmy_10848T0/1-501 GLQGGMSFLE KRLQVKEHQH EEIQNVRNHI HSCFSSVTCF LLPHPGLQVA ENSBTAP00000043475/1-541 GLQGGMSFLE KRLQVKEHQH EEIQNVRNHI HSCFSSVSCF LLPHPGLQVA 301 350 ENSTTRP00000012677/1-565 TSPDFDGKLK DIASEFKEQL QTLIPYVLNP ANLMEKEING SKVTCRGLLE ENSP00000381844/1-541 TSPDFDGKLK DIAGEFKEQL QALIPYVLNP SKLMEKEING SKVTCRGLLE BACU005349/1-616 TSPDFDGKVK DIASEFKEQL QTLIPYVLNP ANLMEKEING SKVTCRGLLE bmy_10848T0/1-501 TSPDFDGKLK DVASEFKEQL QTLIPYVLNP ANLMEKEING SKVTCRGLLE ENSBTAP00000043475/1-541 TSPDFDGKLK DIASEFKEQL QTLILHVLNP ANLMEKEING SKVTCRGLLE 351 400 ENSTTRP00000012677/1-565 YFKAYIKIYQ GEDLPHPKSM L--------- -----QATAE ANNLAAAASA ENSP00000381844/1-541 YFKAYIKIYQ GEDLPHPKSM L--------- -----QATAE ANNLAAAASA BACU005349/1-616 YF-------- ---------- ---------- -----KATAE ANNLAAAASA bmy_10848T0/1-501 YFKAYIKIYQ GEDLPHPKSM LQNMSDVSKY FLFTNQATAE ANNLAAAASA ENSBTAP00000043475/1-541 YFKAYIKIYQ GEDLPHPKSM L--------- -----QATAE ANNLAAAASA 401 450 ENSTTRP00000012677/1-565 KDIYYNNMEE VSGGDKPYLS PDILEEKHCE FKELALDHFK KTKKMGGKDF ENSP00000381844/1-541 KDIYYNNMEE VCGGEKPYLS PDILEEKHCE FKQLALDHFK KTKKMGGKDF BACU005349/1-616 KDMYYNNMEE VSGGDKPYLS PDILEEKHCE FKELALDHFK KIKKMGGKDF bmy_10848T0/1-501 KDIYYNNMEE VSGGDKPYLS PDILEEKHCE FKELALDHFK KTKKMGGKDF ENSBTAP00000043475/1-541 KDVYYNNMEE VCGGDKPYLS PDILEEKHCE FKQLALDHFK KTKKMGGKDF 451 500 ENSTTRP00000012677/1-565 SLRYQQELEE EIKELYENFC KHNGSKNVFS TFRTPAVLFT GIVALYIASG ENSP00000381844/1-541 SFRYQQELEE EIKELYENFC KHNGSKNVFS TFRTPAVLFT GIVALYIASG BACU005349/1-616 SLRYQQELEE EIKELYENFC KHNGSKNVFS TFRTPAVLFT GIVALYIASG bmy_10848T0/1-501 SLRYQQELEE EIKELYENFC KHNGSKNVFS TFRTPAVLFT GIVALYIASG ENSBTAP00000043475/1-541 SLRYQQELEE EIKELYENFC KHNSSKNVFS TFRTPAVLFT GIVALYIASG 501 550 ENSTTRP00000012677/1-565 LTGVIGLEVV AQLFNCMVGL LLIALLTWGY IRYSGQYREL GGAIDSGAAY ENSP00000381844/1-541 LTGFIGLEVV AQLFNCMVGL LLIALLTWGY IRYSGQYREL GGAIDFGAAY BACU005349/1-616 LTGFLGLEVV AQLFNCMVGL LLIALLTWGY IRYSGQYREL GGAIDSGAAY bmy_10848T0/1-501 LTGFIGLEVV AQLFNCMVGL LLIALLTWGY IRYSGQYREL GGAIDSGAAY ENSBTAP00000043475/1-541 LTGFIGLEVV AQLFNCMVGL LLIALLTWGY IRYSGQYREL GGAIDSGAAY 551 600 ENSTTRP00000012677/1-565 VLEQATSHIG N--------- ---------- ---------- -------STQ ENSP00000381844/1-541 VLEQASSHIG N--------- ---------- ---------- -------STQ BACU005349/1-616 VLEQPEPQPG DLIEIFRPFY RHWAVYVGDG YVIHLAPPSE IAGAGMASAM bmy_10848T0/1-501 VLEQATSHVG N--------- ---------- ---------- -------STQ ENSBTAP00000043475/1-541 VLEQATSHIG N--------- ---------- ---------- -------STQ 601 650 ENSTTRP00000012677/1-565 AAVRD----- -----AVVGR ---------- ---------- ---------- ENSP00000381844/1-541 ATVRD----- -----AVVGR ---------- ---------- ---------- BACU005349/1-616 SALADKAIVK KDRLCDVAGR DRYQVNNKHD GKYAPLPPNK IVQRAEELVG bmy_10848T0/1-501 AAVRD----- -----AVVGR ---------- ---------- ---------- ENSBTAP00000043475/1-541 AAVRD----- -----AVAGR ---------- ---------- ---------- 651 700 ENSTTRP00000012677/1-565 ---------- ---------- ---PSLD--- ---------- ---------- ENSP00000381844/1-541 ---------- ---------- ---PSMD--- ---------- ---------- BACU005349/1-616 QEVLYKLTSE NCEHFVNELR YGVPRSDQVR DAIKVAGIAG VGLAAMGLIG bmy_10848T0/1-501 ---------- ---------- ---PSSD--- ---------- ---------- ENSBTAP00000043475/1-541 ---------- ---------- ---PPSD--- ---------- ---------- 701 750 ENSTTRP00000012677/1-565 -------KKV Q ENSP00000381844/1-541 -------KKA Q BACU005349/1-616 IMFSRNKKQK Q bmy_10848T0/1-501 -------KKA Q ENSBTAP00000043475/1-541 -------KKA Q