KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:54:48 2014 Check: 00 .. Name: bmy_20881T0/1-552 Len: 1022 Check: 6411 Weight: 1.00 Name: ENSP00000373450/1-926 Len: 1022 Check: 1966 Weight: 1.00 Name: ENSBTAP00000043499/1-938 Len: 1022 Check: 3260 Weight: 1.00 Name: BACU004831/1-767 Len: 1022 Check: 8665 Weight: 1.00 Name: ENSTTRP00000007087/1-929 Len: 1022 Check: 4134 Weight: 1.00 // 1 50 bmy_20881T0/1-552 ---------- ---------- ---------- ---------- ---------- ENSP00000373450/1-926 MTTKDYPSLW GFGTTKTFKI PIEHLDFKYI EKCSDVKHLE KILCVLRSGE ENSBTAP00000043499/1-938 MATKDYPSLW GFGTTKTFKI PVEHLDFKYI EKCSDVKHLE KILCVLRSGE BACU004831/1-767 MTAKDYPSLW GFGTTKTFKI PVEHLDFKYI EKCSDVKHLE KILCVLRSGE ENSTTRP00000007087/1-929 MTAKDYPSLW GFGTTKTFKI PVEHLDFKYI EKCSDVKHLE KILCVLRSGE 51 100 bmy_20881T0/1-552 ---------- ---------- ---------- ---------- ---------- ENSP00000373450/1-926 EGYYPELTEF CEKHLQALAP ESRALRKDKP AATAASFTAE EWEKIDGDIK ENSBTAP00000043499/1-938 EGYYPELTEF CEKHLSGLAP GSRALRKDKP AATASSFTAE EWEKIDGDIK BACU004831/1-767 EGYYPELTEF CEKRLSGLAP GSRALRREKP AATAASFTAE EWEKIDGDIK ENSTTRP00000007087/1-929 EGYYPELTEF CEKRLSGLAP GSRALRREKP AATAANFTAE EWEKIDGDIK 101 150 bmy_20881T0/1-552 ---------- ---------- ---------- ---------- ---------- ENSP00000373450/1-926 SWVSEIKKEE DKMHFHETET FPAMKDNLPP VRGSNSCLHV GKEKYSK-RP ENSBTAP00000043499/1-938 SWVSEIKKED DKIHFHETET FPAVEDNLPP VRGSNSHLHV AKEKNSKSRP BACU004831/1-767 SWVSEIKKED DKIHFQETET FPAMEDNLPP VRGSNSHLHV AKEKNSKSRP ENSTTRP00000007087/1-929 SWVSEIKKED DKIHFQENET FPAMEDNLPP VRGSTSHLHV AKEKNSKSRP 151 200 bmy_20881T0/1-552 ---------- ---------- ---------- ---------- ---------- ENSP00000373450/1-926 TKKKTPRDYA EWDKFDVEKE CLKIDEDYKE KTVI-DKSHL SKIETRIDTA ENSBTAP00000043499/1-938 AKKKIPRDYA EWDKFDVEKE CAKLDED-KE RTVINNKSHL SKIETRLDTA BACU004831/1-767 AKKKIPRDYA EWDKFDVEKE CAKIDEDYKE KTIVNNKLHL SKIETRLDTA ENSTTRP00000007087/1-929 AKKKIPRDYA EWDKFDVEKE CAKIDEDYKE KTVVNNKLHL SKIETRLDTA 201 250 bmy_20881T0/1-552 ---------- ---------- ---------- ---------- ---------- ENSP00000373450/1-926 GLTEKEKDFL ATREKEKGNE AFNSGDYEEA VMYYTRSISA LPTVVAYNNR ENSBTAP00000043499/1-938 GLTEKEKVFM ATREKEKGNE AFKSGDYEEA VKYYTRSLSV LPTVAAYNNR BACU004831/1-767 GLTEKEKDFL ATHEKEKGNE AFNSGDYEEA VMYYTRSISV LPTVAAYNNR ENSTTRP00000007087/1-929 GLTEKEKDFL AIHEKEKGNE AFNAGDYEEA VMYYTRSISV LPTVAAYNNR 251 300 bmy_20881T0/1-552 ---------- ---------- ---------- ---------- ---------- ENSP00000373450/1-926 AQAEIKLQNW NSAFQDCEKV LELEPGNVKA LLRRATTYKH QNKLREATED ENSBTAP00000043499/1-938 AQAELKLQNW NSAFQDCEKV LELEPGNLKA LLRRATTYKH QNKLQEAIED BACU004831/1-767 AQAELKLQNW NSAFQDCEKV LELEPGNLKA LLRRATTYKH QNKLQEAIKD ENSTTRP00000007087/1-929 AQAELKLQNW NSAFQDCEKV LELEPGNLKA LLRRATTYKH QNKLQEAIKD 301 350 bmy_20881T0/1-552 ---------- ---------- ---------- ---------- ---------- ENSP00000373450/1-926 LSKVLDVEPD NDLAKKTLSE VERDLKNSEA ASETQTKGKR MVIQEIENSE ENSBTAP00000043499/1-938 LNKVLAVEPD NELAKKTLSE VERDLKNSEP ASKTQTKGKR MVIQEVENSE BACU004831/1-767 LNKVLAVEPD NELAKKTLLE VERDLKNSEP ASETQTKGKR MVIQEVENSE ENSTTRP00000007087/1-929 LNKVLTVEPD NELAKKTLLE VERDLKNSEP ASETQTKGKR MVIQEVENSE 351 400 bmy_20881T0/1-552 ---------- ---------- ---------- ---------- ---------- ENSP00000373450/1-926 DEEGK-SGRK HEDGGGDKKP AEPAGAARAA ---QPCVMGN IQKKLTGKAE ENSBTAP00000043499/1-938 DEDEKDSGIK HEDGSGDK-N LLESGGCKSS YDLSPCIGKT IRKLNIQKTP BACU004831/1-767 DENEKDSGRK HEDGIGDK-- ---------- ---------- ---------- ENSTTRP00000007087/1-929 DENEKDSGRK HEDGIGDNXX XXXXXXXXXX ---XXXXXXX XXXXXXXXXX 401 450 bmy_20881T0/1-552 ---------- ---------- ---------- ---------- --------VG ENSP00000373450/1-926 GGKRPARGAP QRGQTPEAGA DKRSPRRASA AAAAGGGATG HPGGGQGAEN ENSBTAP00000043499/1-938 GGR---RNCP APGEGRAGSS RLRPGPRPRA GTTAASAVAA PDDANSHFPH BACU004831/1-767 ---------- ---------- ---------- -----KILSL PNFSSLYLVG ENSTTRP00000007087/1-929 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 451 500 bmy_20881T0/1-552 P--------A GLKSQGNELF KNGQFAEA-- ALRYSAAIAQ LEPAGSGSAD ENSP00000373450/1-926 P--------A GLKSQGNELF RSGQFAEA-- AGKYSAAIAL LEPAGSEIAD ENSBTAP00000043499/1-938 PLPTEAAESA GARGQGGCGR TSGRAACARG GARGQLPVTG L-ASGSGSAA BACU004831/1-767 P--------A GLKSQGNELF KNGQFAEA-- ALRYSAAIAQ LEPAGS---- ENSTTRP00000007087/1-929 P--------A GLKSQGNELF KNGQFAEA-- ALRYSAVIAQ LEPAGSGNAD 501 550 bmy_20881T0/1-552 DLSILYSNRA ACYLKDGNCS GCIQDCNRAL EXHPFSIKPL LRRAMAYETL ENSP00000373450/1-926 DLSILYSNRA ACYLKEGNCS GCIQDCNRAL ELHPFSMKPL LRRAMAYETL ENSBTAP00000043499/1-938 DLSILYSNRA ACYLKDGNCS GCIQDCNRAL ELHPFSIKPL LRRAMAYETV BACU004831/1-767 -LVICMAVML ALSL------ -----SHLAL ELHPFSIKPL LRRAMAYETL ENSTTRP00000007087/1-929 DLSILYSNRA ACYLKDGNCS GCIQDCNRAL ELRPFSIKPL LRRAMAYEAL 551 600 bmy_20881T0/1-552 EQYQKAYVDY KTVLQIDCGI QIANDSVNRI TKILMALDGP SWREKLSPIP ENSP00000373450/1-926 EQYGKAYVDY KTVLQIDCGL QLANDSVNRL SRILMELDGP NWREKLSPIP ENSBTAP00000043499/1-938 EQYQKAYVDY KTVLQIDCGI QLANDSINRI TKILIALDGP NWREKLPPIP BACU004831/1-767 EQYQKAYVDY KTVLQIDCGI QIANDSVNRI TKILMALDGP SWREKLSLL- ENSTTRP00000007087/1-929 EQYQKAYVDY KTVLQIDCGI QIANDSVNRI TKILMALDGP SWREKLSPIP 601 650 bmy_20881T0/1-552 AVPISAQLRA WRPVAETPPD QVGDSCSHHQ PGITDEKMFK TLKEEGNQCV ENSP00000373450/1-926 AVPASVPLQA WHPAKEMISK QAGDSSSHRQ QGITDEKTFK ALKEEGNQCV ENSBTAP00000043499/1-938 AVPTSTQVRA WRPAAETPPD QVGDSCCHPQ PGMPDENVFK TLKEEGNQCV BACU004831/1-767 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007087/1-929 AVPTSAQLRA WRPVAETLPD QVGGSCSHHQ PGITDEEMFK TLKEEGNQCV 651 700 bmy_20881T0/1-552 KDKNYKDALR KY-------- --IPLHT--R ALCYLKLGQF EEAKQDCDQA ENSP00000373450/1-926 NDKNYKDALS KYSECLKINN KECAIYTN-R ALCYLKLCQF EEAKQDCDQA ENSBTAP00000043499/1-938 KDKNYKDALS KYSECLKINN KECAIYTNSR ALCYLKLGQF EEAKQDCEQA BACU004831/1-767 ---------- ---------- --CPLLHN-- --C--ELGGL WQRRPQTKRE ENSTTRP00000007087/1-929 KDKNYKDALS KYSECLKI-N KECAIYTN-R ALCYLKLGQF EEAKQDCDQA 701 750 bmy_20881T0/1-552 LQMDLGNVKA CYRRALAHKG LKYVAGWSGK GRGITARPAG VSHNPQLILP ENSP00000373450/1-926 LQLADGNVKA FYRRALAHKG LK-------- ---------- ---------- ENSBTAP00000043499/1-938 LQMDHGNVKA CYRRALAHKG LK-------- ---------- ---------- BACU004831/1-767 IPA------- ----AITNRA SQ-------- ---------- ---------- ENSTTRP00000007087/1-929 LQIDLGNVKA CYRRALAYKG LK-------- ---------- ---------- 751 800 bmy_20881T0/1-552 VLQCPNYQKS LNDLHKVLLL DPNIIEAKME LEEVTRILNV QDNAAPFNKE ENSP00000373450/1-926 -----NYQKS LIDLNKVILL DPSIIEAKME LEEVTRLLNL KDKTAPFNKE ENSBTAP00000043499/1-938 -----NYQKS LNDLNKVLLL DPSIVEAKME LEEVTRILNI KDNTASFNKE BACU004831/1-767 -----NYQKS LNDLHKVLLL DPNIIEAKME LEEVTRILNV QDNAASFNTE ENSTTRP00000007087/1-929 -----NYQKS LHDLHKVLLL DPNIIEAKME LEEVTRTLNV QENAALFNKE 801 850 bmy_20881T0/1-552 KERRKIEIQE VNEGHKEEPE RTSEDVSTDS RASEKGYTSN GPREFYEKLP ENSP00000373450/1-926 KERRKIEIQE VNEG-KEEPG RPAGEVSMGC LASEKGGKSS RSPEDPEKLP ENSBTAP00000043499/1-938 KERRKIEIQE VSEGHREEPE RTSKEVPMDG LASENGDTSN GPQELYEKLL BACU004831/1-767 KERRKIEIQE VNEGHKEEPE RTSEDASTDS RASEKGDTSN GPGEFYEKLP ENSTTRP00000007087/1-929 KERRKIEIEE VNEGQKEEPE RTSEDISTDS HASETGDTSN GPREFYEKLP 851 900 bmy_20881T0/1-552 IPKPNNAYEF GQQYDSTAEL LNMKQFYARA LNVTAATTGD TITDNVTPPA ENSP00000373450/1-926 IAKPNNAYEF GQIINALSTR KD-KEACAHL LAITA----- -------PKD ENSBTAP00000043499/1-938 ISKPNNAYEF GQVINAISTR KD-QGACAHL LAITE----- -------PKD BACU004831/1-767 IPKPNNAYEF GQVINAVSTR KD-KEACAHL LAITE----- -------PKD ENSTTRP00000007087/1-929 IPKPNNAYEF GQVINAVSTR KD-KEACAHL LAITE----- -------PKD 901 950 bmy_20881T0/1-552 MAKFRNINYT HCKNNKEYSQ IVNIPIRDRQ FLAKDTTFLV YSSLRYDSES ENSP00000373450/1-926 LPMFLSNKLE GDT------F LLLIQSLKNN LIEKDPS-LV YQHLLYLSKA ENSBTAP00000043499/1-938 LPVLLSNKLE GDT------F LLLLQSLKSH LIDKDPS-LV YQHLLYLSKA BACU004831/1-767 LPVLLSNKLE GDTFVEVNPF LLFIHSLKNN LIDKDPS-LV YQHLVYLSKA ENSTTRP00000007087/1-929 LPVLLSNKLE GDT------F LLLIQSLKNN LIDKDPS-LV YQHLLYLSKA 951 1000 bmy_20881T0/1-552 LILELKKLDV NTCCSRLLTI TNGRRTYSSQ TCMAEVVFGA NLLIKDSDLG ENSP00000373450/1-926 ERFKMM---- ------LTLI SKGQKELIEQ ---------- -LFEDLSDTP ENSBTAP00000043499/1-938 ERFKMM---- ------LTLI SKGQKEQIKQ ---------- -LFDDLSDAP BACU004831/1-767 ERFKMM---- ------LTLI SKGQKEQIKQ ---------- -LFDDLSDTP ENSTTRP00000007087/1-929 ERFKMM---- ------LTLI SKGQKEQIKQ ---------- -LFDDLSDTP 1001 1050 bmy_20881T0/1-552 YLEIAFQEKA LLGNSSHLDK KN ENSP00000373450/1-926 NNHFTLEDIQ ALKRQYEL-- -- ENSBTAP00000043499/1-938 NKHFTLEDVQ ALKRDYDL-- -- BACU004831/1-767 NKHFTLEDVQ ALKRQYEL-- -- ENSTTRP00000007087/1-929 NKHFTSEDVQ ALKRQYEL-- --