KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:54:50 2014 Check: 00 .. Name: ENSP00000370377/1-1038 Len: 1143 Check: 7262 Weight: 1.00 Name: ENSTTRP00000014361/1-1017 Len: 1143 Check: 4168 Weight: 1.00 Name: ENSBTAP00000043531/1-1032 Len: 1143 Check: 3187 Weight: 1.00 Name: bmy_02403T0/1-872 Len: 1143 Check: 7439 Weight: 1.00 Name: BACU001788/1-1080 Len: 1143 Check: 1800 Weight: 1.00 // 1 50 ENSP00000370377/1-1038 MWRCGGRQGL CVLRRLSGGH AHHRAWRWNS NRACERA-LQ YKLGDKIHGF ENSTTRP00000014361/1-1017 ---------- ---------H ARLGAWRWAS TMACERALLR YRVGEKIHGF ENSBTAP00000043531/1-1032 MWRGGWRARG V-LRRLSGGS AHLGAWRWGS TKACERA-LQ YRIGERIHGF bmy_02403T0/1-872 MWRSGWRSGG V-LRRLSGRS ASLGAWRWAS TTACERALLR YRVGDKIHSF BACU001788/1-1080 MLASLPANHV TLIIFLKHRS ASLGAWRWAS TTACERALLR YRVGEKIHGF 51 100 ENSP00000370377/1-1038 TVNQVTSVPE LFLTAVKLTH DDTGARYLHL AREDTNNLFS VQFRTTPMDS ENSTTRP00000014361/1-1017 TVSQVTSVPE LSLTAVKLSH DSTGAQHLHL AREDRNNLFS VQFRTTPMDS ENSBTAP00000043531/1-1032 TVNQVTPVPE LSLTAVKLSH DGTGAQYLHL AREDGNNLFS VQFRTTPTDS bmy_02403T0/1-872 TVSQVTSVPE LSLTAVKLSH DITGAQHLHL AREDRNNLFS VQFRTTPMDS BACU001788/1-1080 TVSQVTSVPE LTLTAVKLSH DSTGAQHLHL AREDRNNLFS VQFRTAPADS 101 150 ENSP00000370377/1-1038 TGVPHILEHT VLCGSQKYPC RDPFFKMLNR SLSTFMNAFT ASDYTL---- ENSTTRP00000014361/1-1017 SGAPHVLEHT VLCGSQRYPC RDPFFKMLNR SLSTFMNAFT ASDYTL---- ENSBTAP00000043531/1-1032 SGAPHILEHT VLCGSQRYPC RDPFFKMLNR SLSTFMNAFT ASDYTL---- bmy_02403T0/1-872 NGAPHVLEHT VLCGSQRYPC RDPFFKMLNR SLSTFMNAFT ASDYTL---- BACU001788/1-1080 SGAPHVLEHT VLCGSQRYPC RDPFFKMLNR SLSTFMNAFT ASDYTLYPFS 151 200 ENSP00000370377/1-1038 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014361/1-1017 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000043531/1-1032 ---------- ---------- ---------- ---------- ---------- bmy_02403T0/1-872 ---------- ---------- ---------- ---------- ---------- BACU001788/1-1080 TQNPKDFQNL LSVYLDAAFF PCLRELDFCQ EGWRLEHEDP SDPQTPLVFK 201 250 ENSP00000370377/1-1038 ---------- ---------- ---------- ---------- --YPFSTQNP ENSTTRP00000014361/1-1017 ---------- ---------- ---------- ---------- --YPFSTQNP ENSBTAP00000043531/1-1032 ---------- ---------- ---------- ---------- --YPFSTQNP bmy_02403T0/1-872 ---------- ---------- ---------- ---------- --YPFSTQNP BACU001788/1-1080 GVQWALCRPG RPLGPRVTPV PDLPPGVGAA ASVPLPASDY TLYPFSTQNP 251 300 ENSP00000370377/1-1038 KDFQNLLSVY LDATFFPCLR ELDFWQEGWR LEHENPSDPQ TPLVFKGVVF ENSTTRP00000014361/1-1017 KDFRNLLSVY LDAAFFPCLR ELDFWQEGWR LEHEDPNDPQ TPLVFKGVVF ENSBTAP00000043531/1-1032 KDFQNLLSVY LDAAFFPCLR ELDFWQEGWR LEHEDPNDPQ TPLVFKGVVF bmy_02403T0/1-872 KDFQNLLSVY LDAAFFPCLR EPDFCQEGWR LEHEDPNDPQ TPLVFKGVVF BACU001788/1-1080 KDFQNLLSVY LDAAFFPCLR ELDFCQEGWR LEHEDPSDPQ TPLVFKGVVF 301 350 ENSP00000370377/1-1038 NEMKGAFTDN ERIFSQHLQN RLLPDHTYSV VSGGDPLCIP ELTWEQLKQF ENSTTRP00000014361/1-1017 NEMKGAFTDN ERMFSQHVQS HLLPDHTYSV VSGGDPLCIP DLTWEQLRQF ENSBTAP00000043531/1-1032 NEMKGAFTDN ERIFSQHLQN RLLPDHTYSV VSGGDPLCIP DLTWEQLRRF bmy_02403T0/1-872 NEMKGAFTDN ERIFSQHVQS HLLPDHTYSV VSGGDPLCIP DLTWEQLRQF BACU001788/1-1080 NEMKGAFTDN ERIFSQHVQS RLLPDHTYSV VSGGDPLCIP DLTWEQLRQF 351 400 ENSP00000370377/1-1038 HATHYHPSNA RFFTYGNFPL EQHLKQIHEE ALSKFQKIEP STVVPAQTPW ENSTTRP00000014361/1-1017 HATHYHPSNA XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000043531/1-1032 HAMHYHPSNA RFFTYGNFPL EQHLKQIHEE ALSKFQRIEP RTSVPAQKPW bmy_02403T0/1-872 HATHYHPSNA RFFTYGNFPL EQHLKQIHEE ALSKFQRIKP RTAVPAQKPW BACU001788/1-1080 HATHYHPSNA RFFTYGNFPL EQHLKQIHEE ALSKFQRIKP RTAVPAQKPW 401 450 ENSP00000370377/1-1038 DKPREFQITC GPDSFATDPS KQTTISVSFL LPDITDTFEA FTLSLLSSLL ENSTTRP00000014361/1-1017 XXXREFQITC APDSLAAGSS EQTTISVSFL LPDITDTFEA FTLSLLSSLL ENSBTAP00000043531/1-1032 DEPREFQITC APDSLAEGPS GQTTISVSFL LPEITDTFEA FTLSLLSSLL bmy_02403T0/1-872 DKPREFQVTC APDSLAAGSS EQTTISVSFL LPE------- ---------- BACU001788/1-1080 DKPREFQVTC APDSLAAGSS EQTTISVSFL LPDITDTFEA FTLNLLSSLL 451 500 ENSP00000370377/1-1038 TSGPNSPFYK ALIESGLGTD FSPDVGYNGY TREAYFSVGL QGIAEKDIET ENSTTRP00000014361/1-1017 ISGPNSPFYK ALIESGLGTD FSPDVGYNGC TREAYFSVGL QGIAEKDIQT ENSBTAP00000043531/1-1032 ISGPNAPFYK ALIESGLGTD FSPDVGYNGC TREAYFSVGL QGIAEKDVQT bmy_02403T0/1-872 ---------- ---------- ------YNGC TREAYFSVGL QGIAEKDIQT BACU001788/1-1080 ISGPNSPFYK ALIESGLGTD FSPDVGYNGC TREAYFSVGL QGIAEKDIQT 501 550 ENSP00000370377/1-1038 VRSLIDRTID EVVEKGFEDD RIEALLHKIE IQMKHQSTSF GLMLTSYIAS ENSTTRP00000014361/1-1017 VQDLVDRTLD DIIEKGFEDD RIEALLHKIE IQMKHQSVSF GLALTSYVAS ENSBTAP00000043531/1-1032 VRDIVDRTLD DVIEKGFEED HIEALLHKIE IQMKHQSVSF GLTLTSYIAS bmy_02403T0/1-872 VXDLVDRTLD DVIEKGFEDD RIEALLHKIE IQMKHQSVSF GLALTSYIAS BACU001788/1-1080 VRDLVDRTLD DIIEKGFEDD RIEALLHKIE IQMKHQSVSF GLALTSYIAS 551 600 ENSP00000370377/1-1038 CWNHDGDPVE LLKLGNQLAK FRQCLQENPK FLQEKVKQYF KNNQHKLTLS ENSTTRP00000014361/1-1017 CWNHDGDPVE LLKLGSQVAQ FRKCLEENPK FLQEKVKQYF KNNQHKLTLS ENSBTAP00000043531/1-1032 CWNHDGDPVE LLKLGSQVAQ FRKCLEENPR FLQEKVKQYF KNNRHKLTLS bmy_02403T0/1-872 CWNHDGDPVE LLKLGSQVAR FRKCLEENPK FLQEKVKQYF KNNQHKLTLS BACU001788/1-1080 CWNHDGDPVE LLKLGSQVAR FRKCLEENPK FLQEKVKQYF KNNQHKLTLS 601 650 ENSP00000370377/1-1038 MRPDDKYHEK QAQVEATKLK QKVEALSPGD RQQIYEKGLE LRSQQSKPQD ENSTTRP00000014361/1-1017 MKPDDKYSEK QMQLEAEKLK QKVNSLSPED KQQIYEKGLE LQAQQSQPQD ENSBTAP00000043531/1-1032 MKPDDKYSEK QAQMETEKLQ QKVTSLSPEE KQQIYEKGLE LQAQQSRPPD bmy_02403T0/1-872 MKPDDRYSEK QMQLETEKLK QKVNSLSPED RQQIYEKGLE LQAQQSQPQD BACU001788/1-1080 MKPDDKYSEK QMQLETEKLK QKVNSLSPED KQQIYEKGLE LQAQQSQPQD 651 700 ENSP00000370377/1-1038 ASCLPALKVS DIEPTIPVTE LDVVLTAGDI PVQYCAQPTN GMVYFRAFSS ENSTTRP00000014361/1-1017 ASCLPALKVS DIEPRIPFTE VEVALAAGDI PVQYCTQPTN GVVYFRAFSS ENSBTAP00000043531/1-1032 ASCLPALRVS DIEPRIPVTE LEVVQAARDT PVQYCAQPTN GVVYFRAFSS bmy_02403T0/1-872 ASCLPALKVS DIEPRIPFTE VEVALAAGDT PVQYCTQPTN GVIYFRAFSS BACU001788/1-1080 ASCLPALKVS DIEPRIPFTE VEVALAAGDT PVQYCTQPTN GVIYFRAFSS 701 750 ENSP00000370377/1-1038 LNTLPEELRP YVPLFCSVLT KLGCGLLDYR EQAQQIELKT GGMSASPHVL ENSTTRP00000014361/1-1017 LNTLPEELRP YVPLFCNVLT KLGCGALDYR ELAQQVDLKT GGLAATPHVL ENSBTAP00000043531/1-1032 LNALPEELRP YVPLFCSVLT KLGCGSLDYR ELAQQVELKT GGLAAAPQVL bmy_02403T0/1-872 LNTLPEELRP YVPLFCNVLT KLGCGGLDYR ELAQQVDLKT GGLAAAPHVL BACU001788/1-1080 LNTLPEELRP YVPLFCNVLT KLGCGGLDYR ELAQQVDLKT GGLAAAPHVL 751 800 ENSP00000370377/1-1038 PDDSHMDTYE QVGVLFSSLC LDRNLPDMMQ LWSEIFNNPC FEEEEHFKVL ENSTTRP00000014361/1-1017 PDDSHLDTYE QVGVLFSSFC LDRNLPDMMH LWSEIFNNPC FEAEEHFRVL ENSBTAP00000043531/1-1032 PDDSHLNTYE Q-GVLFSSFC LDRNLADMMH LWSEILNNPR FEEEEHFRVL bmy_02403T0/1-872 PDDSHLDTYE Q-GVLFSSFC LDRNLPDMMH LWSEIFNNPC FEEEEHFRVL BACU001788/1-1080 PDDSHLDTYE Q-GVLFSSFC LDRNLPDMMH LWSEIFNNPC FDEEEHFRVL 801 850 ENSP00000370377/1-1038 VKMTAQELAN GIPDSGHLYA SIRAGRTLTP AGDLQETFSG MDQVRLMKRI ENSTTRP00000014361/1-1017 VKMTAQELSN GVPDAGHLYA SIRAGRMLAP AGDLQETFGG MDQVRLMKRI ENSBTAP00000043531/1-1032 VRMAAQELSN GVPDSGHLYA SIRAGRTLAP AGDLQETFGG MDQVLLMKRI bmy_02403T0/1-872 VKMTAQELSN GVPDAGHLYA SIRAGRTLAP AGDLQETFGG MDQVRLMKSI BACU001788/1-1080 VKMTAQELSN GVPDAGHLYA SIRAGRTLVP AGDLQETFGG MDQTFLN--- 851 900 ENSP00000370377/1-1038 AEMTDIKPIL RKLPRIKKHL LNGDNMRCSV NATPQQMPQT EKAVEDFLRS ENSTTRP00000014361/1-1017 AEMTDIKPIL RKLPHIRKHL LNCDNFXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000043531/1-1032 AEMTDLQPVL GKLLRIWKHL LSCDSLRCSV NATAQQMLQV EGAVEAFLRS bmy_02403T0/1-872 AEMTDIKPIL RKLPHIKKHL LNCDNFRCSV NATPQQMSQV ENSVDNFLRT BACU001788/1-1080 ---------- ---------- ------RCSV NATPQQMSQV ENSVDSFLRT 901 950 ENSP00000370377/1-1038 IGRSKKERRP VRPHTVEKPV PSSSGGDAHV PHGSQVIRKL VMEPTFKPWQ ENSTTRP00000014361/1-1017 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000043531/1-1032 LSRTEKEQRS MCPHVVEKPA PKASSGSC-- ----LVIRRL VTDPTFEPCQ bmy_02403T0/1-872 LSRSKKERKP APPHVVEKPA PK-------- ---------- --------GP BACU001788/1-1080 LSRSKKERKP APPHVVEDP- ---------- ---------- ----TFKPCP 951 1000 ENSP00000370377/1-1038 MKTHFLMPFP VNYVGECIRT VPYTDPDHAS LKILARLMTA KFLHTEIREK ENSTTRP00000014361/1-1017 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX LKILARLMTA KFLHTEIREK ENSBTAP00000043531/1-1032 MKTHFLLPFP VNYVAECIRT APYTAPDHAS LKILARLMTA KFLHTEIREK bmy_02403T0/1-872 GRHSLVTRKL VTVSPFCLMP CP-------- ----GRILGP FHHQLGVRRV BACU001788/1-1080 MKTHFLFPFP VNYVAECIRT APYAAPAHAS LKILARLMTA KFLHTEIREK 1001 1050 ENSP00000370377/1-1038 GGAYGGGAKL SHNGIFTLYS YRDPNTIETL QSFGKAVDWA KSGKFTQQDI ENSTTRP00000014361/1-1017 GGAYGGGARL SYGGIFTLYS YRDPHSTETL QSFLKAIDWA KSGRFTQQDI ENSBTAP00000043531/1-1032 GGAYGGGARL SYGGMFTLYS YRDPRSTETL QSFMKAIDWA KAGRFTQQDI bmy_02403T0/1-872 GPAR------ ---------- ---------- ---------- ---------- BACU001788/1-1080 GGAYGGGARL SYGGIFTLYS YRDPHSTETL QSFLKAIDWA KSGRFTQQDI 1051 1100 ENSP00000370377/1-1038 DEAKLSVFST VDAPVAPSDK GMDHFLYGLS DEMKQAHREQ LFAVSHDKLL ENSTTRP00000014361/1-1017 NEAKLSVFAA VDAPVAPSDK GLDCFLYGLS DEAKQAHREQ LFAVSHEDLV ENSBTAP00000043531/1-1032 DEAKLSVFSA VDAPVAPSDK GLDHFLYGLS DEMKQVHREQ LFTVCHEDLV bmy_02403T0/1-872 ---------- ---------- ---CCLCG-- ---RLVFSPP LFK------- BACU001788/1-1080 NEAKLSVFAA VDAPVAPSDK GLDCFLYGLS DEVKQAHREQ LFAVRHEDLV 1101 1150 ENSP00000370377/1-1038 AVSDRYLGTG KSTHGLAILG PENPKIAKDP SWIIQ----- --- ENSTTRP00000014361/1-1017 DVSNRYLGAG RSTHGMALLG PDNESIAKDP SW-------- --- ENSBTAP00000043531/1-1032 DVSNRYLGAR RSTHGVALLG PDNASIAKDP SWVIRQR--- --- bmy_02403T0/1-872 ---------- RHCH-VGVTS PPVRPAAPEL WWLWRLAWLV LGE BACU001788/1-1080 DVSNRYLGAG RSTHGVALLG PDNASIAKDP SWVIR----- ---