KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:54:51 2014 Check: 00 .. Name: bmy_02808T0/1-797 Len: 1241 Check: 1331 Weight: 1.00 Name: ENSP00000358532/1-1227 Len: 1241 Check: 8406 Weight: 1.00 Name: BACU004640/1-1205 Len: 1241 Check: 4397 Weight: 1.00 Name: ENSBTAP00000043544/1-1210 Len: 1241 Check: 9853 Weight: 1.00 // 1 50 bmy_02808T0/1-797 ---------- ---------M RTSQALASS- -------SRG AKGEK----- ENSP00000358532/1-1227 MVLAAAMSQD ADPSGPEQPD RVACSVPGA- --RASPAPSG PRGMQQPPPP BACU004640/1-1205 ------MSQD AEPSGPEQPD RDARSVPGA- -----PAPPG PRGMQ--PPP ENSBTAP00000043544/1-1210 MVLAAAMSQD TEPSGPEQPD RDARSVPGAP APPAPPAPPG PRGMQ--PPP 51 100 bmy_02808T0/1-797 ---------- ---AIRPSGR IL-------- ---------- ---------- ENSP00000358532/1-1227 PQPPPPPQAG LPQIIQNAAK LLDKNPFSVS NPNPLLPSPA SLQLAQLQAQ BACU004640/1-1205 P---PPPQAG LPQIIQNAAK LLDKTPFSVS NPNPLLPSPA SLQLAQLQAQ ENSBTAP00000043544/1-1210 PPPPPPPQAS LPQIIQNAAK LLDKTPFSVS NPNPLLPSPA SLQLAQLQAQ 101 150 bmy_02808T0/1-797 ---------- ---------- ------LYRD SVSQDEPDIW RHCCT---PI ENSP00000358532/1-1227 LTLHRLKLAQ TAVTNNTAAA TVLNQVLSKV AMSQPLFNQL RHPSVITGPH BACU004640/1-1205 LTLHRLKLAQ TAVTNNTAAA TVLNQVLSKV AMSQPLFNQL RHPSMISSPH ENSBTAP00000043544/1-1210 LTLHRLKLAQ TAVTNNTAAA TVLNQVLSKV AMSQPLFNQL RHPSMISAPH 151 200 bmy_02808T0/1-797 G--------- ---------- ---------- ---------- ---------- ENSP00000358532/1-1227 GHAGVPQHAA AIPSTRFPSN AIAFSPPSQT RGPGPSMNLP NQPPSAMVMH BACU004640/1-1205 GHTGVPQHAA TLPSARFPSN AIAFSPPGQT RGPGPSVSLP SQPPNAIMMH ENSBTAP00000043544/1-1210 GHTGVPQHAA TVPSTRFPSN ALAFSPPGQT RGPGPTVSLP SQPPNAMVMH 201 250 bmy_02808T0/1-797 ---------- ---------- --GEEVSSDW FYHYKLC--- ---------- ENSP00000358532/1-1227 PFTGVMPQTP GQPAVILGIG KTGPAPATAG FYEYGKASSG QTYGPETDGQ BACU004640/1-1205 PFSGVMPQTP AQPAVILGIG KTAPAPAAAG FYEYGKANSG QAYGSETDGQ ENSBTAP00000043544/1-1210 PF---MPQTP TQPAVILGLG KTGPAPAAAG FYEYGKASSG QAYGSETDGQ 251 300 bmy_02808T0/1-797 ---------- ---------- -----DALLV TNRDIKNRKS N--------P ENSP00000358532/1-1227 PGFLPSSAST SGSVTYEGHY SHTGQDGQAA FSKDFYGPNS QGSHVASGFP BACU004640/1-1205 PSFLPASAST SGSVTYEGHY SHSGQDGQAA FPKDFYGPNA QGSQVAGGFA ENSBTAP00000043544/1-1210 PGFLPASAAT SGSVTYEGHY SHSGQDGQAA FPKDFYGPSA QGSQVAGGFV 301 350 bmy_02808T0/1-797 AEKAKGI--- ---------- ---------- ---------- ---------- ENSP00000358532/1-1227 AEQAGGLKSE VGPLLQGTNS QWESPHGFSG QSKPDLTAGP -MWPPPHNQP BACU004640/1-1205 AEPAGGLKGE VGPLLQGPNS QWESPHGFSG QSKPDLTAVP NVWPPAPSQP ENSBTAP00000043544/1-1210 AEPAGALKGE VGPLLQGPNS QWESPHGFSG QSKPDLAAAP SLWPPPPGQP 351 400 bmy_02808T0/1-797 ---------- ---------- ---------- ---------- ---------- ENSP00000358532/1-1227 YELYDPEEPT SDRTPPSFGG RLNNSKQGFI GAGRRAKEDQ ALLSVRPLQA BACU004640/1-1205 YELYDPEEPT QDRTPPSFGG RLNNSKQGFS GAWRRATEEK ATLSVRPLQA ENSBTAP00000043544/1-1210 YELYDPEEPT PDRTPPSFGG RLNNSKQGFS GARRRAKEEQ AVLSLRPLQA 401 450 bmy_02808T0/1-797 ---------- --------SV C--------- --------IH IDEC------ ENSP00000358532/1-1227 HELNDFHGVA PLHLPHICSI CDKKVFDLKD WELHVKGKLH AQKCLVFSEN BACU004640/1-1205 HELNDFHGVA PLHLPHVCSI CDKKVFDLKD WELHVKGKLH AQKCLLFSEN ENSBTAP00000043544/1-1210 HELNDFHGVA PLHLPHVCSI CDKKVFDLKD WELHVKGKLH AQKCLLFSEN 451 500 bmy_02808T0/1-797 --------GS DDLLVLRFRD SKVY------ ---SNIEV-- ----ARHMSH ENSP00000358532/1-1227 AGIRCILGSA EGTLCASPNS TAVYNPAGNE DYASNLGTSY VPIPARSFTQ BACU004640/1-1205 PAVQCVLGSA EGTLCASPNS TAVYNPAGNE DYSSNLGTSY AAIPVRSYTL ENSBTAP00000043544/1-1210 AGVRCVLGPA EGTLCGSPNS TAVYNPAGTE DYSSNLGTSY AAIPARSFTQ 501 550 bmy_02808T0/1-797 PRP------- ---FAQWKTG AGRVVHICNL PEGSCTENDV INLGLPFGKV ENSP00000358532/1-1227 SSPTFPLASV GTTFAQRK-G AGRVVHICNL PEGSCTENDV INLGLPFGKV BACU004640/1-1205 SNPAFPSASP GTN---RKTG AGRVVHICNL PEGSCTENDV INLGLPFGKV ENSBTAP00000043544/1-1210 SSPAFPSASP GTNFAQRKTG AGRVVHICNL PEGSCTENDV INLGLPFGKV 551 600 bmy_02808T0/1-797 TNYILMKSTN Q--------- ---------- ---------- ---------- ENSP00000358532/1-1227 TNYILMKSTN QAFLEMAYTE AAQAMVQYYQ EKSAVINGEK LLIRMSKRYK BACU004640/1-1205 TNYILMKSTN QAFLEMAYTE AAQAMVQYYQ EKSAMINGEK LLIRMSKRYK ENSBTAP00000043544/1-1210 TNYILMKSTN QAFLEMAYTE AAQAMVQYYR EKSAMINGEK LLIRMSKRYK 601 650 bmy_02808T0/1-797 -----KPGKT VAAIIQDIHS QRERDMFREA DRYGPERPRS RSPVSRSLSP ENSP00000358532/1-1227 ELQLKKPGKA VAAIIQDIHS QRERDMFREA DRYGPERPRS RSPVSRSLSP BACU004640/1-1205 ELQLKKPGKT VAAIIQDIHS QRERDMFREA DRYGPERPRS RSPVSRSLSP ENSBTAP00000043544/1-1210 ELQLKKPGKT VAAIIQDIHS QRERDMFREA ERYAPERPRS RSPVSRSLSP 651 700 bmy_02808T0/1-797 RSHTPSFTSC SSSHSPLGPS RADWGNGRDS WEHSPYSRRE EERGPVPWRE ENSP00000358532/1-1227 RSHTPSFTSC SSSHSPPGPS RADWGNGRDS WEHSPYARRE EERDPAPWRD BACU004640/1-1205 RSHTPSFTSC SSSHSPLGPS RADWGNGRDS WEHSPYARRE EERGPVPWRE ENSBTAP00000043544/1-1210 RSHTPSFTSC SSSHSPPGPS RADWGNGRDS WEHSPYARRE ---------- 701 750 bmy_02808T0/1-797 NGEDKRERTD TWAHDRKQYP RQLDKAELDE RLEGGRGYRE RHPRSGSPNP ENSP00000358532/1-1227 NGDDKRDRMD PWAHDRKHHP RQLDKAELDE RPEGGRPHRE KYPRSGSPNL BACU004640/1-1205 NGEDKRERTD TWAHDRKQYP RQLDKAELDE RLEGGRGYRE RHPRSGSPNP ENSBTAP00000043544/1-1210 NGEDKRDRMD TWAHDRKHYP RQLDKAELDE RLEVGRGYRE KHPRSGSPNP 751 800 bmy_02808T0/1-797 LHSASGYKSR EDGYYRKESK GKSDRYLKQQ QDVPGRSRRK NEARLREGRH ENSP00000358532/1-1227 PHSVSSYKSR EDGYYRKEPK AKWDKYLKQQ QDAPGRSRRK DEARLRESRH BACU004640/1-1205 LHSASGYKSR EDGYYRKESK GKSDRYLKQQ QDVPGRSRRK NEARLREGRH ENSBTAP00000043544/1-1210 LHSASGYKSR EDGYHRKESK GKSDKYLKPQ QDAPGRSRRK DEARLREGRH 801 850 bmy_02808T0/1-797 PPADDSGRED GLEPK----- -GTKSKQSEK TRTKRPDRDQ EGA-DRKESR ENSP00000358532/1-1227 PHPDDSGKED GLGPKVTRAP EGAKAKQNEK NKTKRTDRDQ EGADDRKENT BACU004640/1-1205 PPPDDSGRED GLEPK----- -GTKSKQSEK TRTKRPDRDQ EGA-DRKESR ENSBTAP00000043544/1-1210 PHADDAGRED GLEPK----- -GTKSKQSEK NRAKRSDRDQ EGADDRKE-R 851 900 bmy_02808T0/1-797 MAENEAEKEE QDSMEESPLH LGRQEKETES FDAENTKARK EQDSESGSEA ENSP00000358532/1-1227 MAENEAGKEE QEGMEESPQS VGRQEKEAEF SDPENTRTKK EQDWESESEA BACU004640/1-1205 MAENEAEKEE QDSVEESPLH LGRQEKETES FDAENTKARK EQDLESGSEA ENSBTAP00000043544/1-1210 MAENEAGKEE QDSMEESPPS VGRQEKETES SDTENRRARK EQDSESGSEA 901 950 bmy_02808T0/1-797 EGESWYPTNM EELVTVDEVG EEEDFIMEPD IPELEEIVPI EQKDKICPEI ENSP00000358532/1-1227 EGESWYPTNM EELVTVDEVG EEEDFIVEPD IPELEEIVPI DQKDKICPET BACU004640/1-1205 EGESWYPTNM EELVTVDEVG EEEDFIMEPD IPELEEIVPI EQKDKICPEI ENSBTAP00000043544/1-1210 EGESWYPTNM EELVTVDEVG EEEDFIMEPD IPELEEIVPI DQKDRISAEI 951 1000 bmy_02808T0/1-797 CPCVTTTLDL DLAKEFTKEG VKTIGNEAAE ISLKLPKELP SASMSCPSDM ENSP00000358532/1-1227 CLCVTTTLDL DLAQDFPKEG VKAVGNGAAE ISLKSPRELP SASTSCPSDM BACU004640/1-1205 CPCVTTTLDL DLAKEFTKEG VKTIGNEAAE ISLKSPKALP SASMSCPSDM ENSBTAP00000043544/1-1210 CPCVTTALDL DFTKGFAKEG VKTIGNGAGE ISLKSPEELP SASTGCPSDM 1001 1050 bmy_02808T0/1-797 DVEMPGLNLD VERKPAECET GLSLEGSDCC EKQAKGAESS DVRLAPTLQQ ENSP00000358532/1-1227 DVEMPGLNLD AERKPAESET GLSLEDSDCY EKEAKGVESS DVHPAPTVQQ BACU004640/1-1205 DVETPGLNLD VERKPAECET GLSLEGSDCC EKQAEGAESS DVRLAPTLQQ ENSBTAP00000043544/1-1210 DVEMPGLNLD AERKPAECET GLSLEGSDCY EKPAKGGESS DVRLAPPLLQ 1051 1100 bmy_02808T0/1-797 MSSPKPAEER AWQPGPFLDD CKARGTLEDG AGEGSPLEEK ASPLTETDLQ ENSP00000358532/1-1227 MSSPKPAEER ARQPSPFVDD CKTRGTPEDG ACEGSPLEEK ASPPIETDLQ BACU004640/1-1205 MSSPKPAEER AWQPGPFLDD CKARGTLEDG AGEGSPLEEK ASPLTETDLQ ENSBTAP00000043544/1-1210 MSSPKPAEER AWQPGPFLDD CKARGTPEDG AGEGSPLEEK AGPPTETDLQ 1101 1150 bmy_02808T0/1-797 SQACQGVSTQ DNSRYMEMKS LDVRSLEYAE VELKQPLSLP SWEPEDVFRE ENSP00000358532/1-1227 NQACQEVLTP ENSRYVEMKS LEVRSPEYTE VELKQPLSLP SWEPEDVFSE BACU004640/1-1205 SQACQGVSTQ DNSRYMEMKS LDVRSLEYAE VELKQPLSLP SWEPEDVFRE ENSBTAP00000043544/1-1210 SQACQGASTP ENSRYSEMKS LDVRSLEDAE VELKQPLSLP SWEPEDVFSE 1151 1200 bmy_02808T0/1-797 LSIPLGGHCK SFINKSISPR GA--SQHGGS PFPSSFLFSF SSA-----FK ENSP00000358532/1-1227 LSIPLG---- ---VEFVVPR TGFYCKLCGL FYTSEETAKM SHCRSAVHYR BACU004640/1-1205 LSIPLG---- ---VEFVVPR TGFYCKLCGL FYTSEEMAKM SHCRSAVHYR ENSBTAP00000043544/1-1210 LSIPLG---- ---VEFVVPR TGFYCKLCGL FYTSEEMAKM SHCRSAVHYR 1201 1250 bmy_02808T0/1-797 NFILVPFSQI RRANFLFFKR MSLLHSVQYA LGQKLKKANT H ENSP00000358532/1-1227 NLQKY-LSQL AEEGLKETEG ADSPRPEDSG IVPRFERKKL - BACU004640/1-1205 NLQKY-LSQL AKEGLMETEG AGSPRPEDSG IVPHFERKKL - ENSBTAP00000043544/1-1210 NLQKY-LSQL AEEGLKETER AGSPRPQDSG IVPHFERKKL -