KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 4 Type: P Thu May 15 17:54:51 2014 Check: 00 ..
Name: bmy_02808T0/1-797 Len: 1241 Check: 1331 Weight: 1.00
Name: ENSP00000358532/1-1227 Len: 1241 Check: 8406 Weight: 1.00
Name: BACU004640/1-1205 Len: 1241 Check: 4397 Weight: 1.00
Name: ENSBTAP00000043544/1-1210 Len: 1241 Check: 9853 Weight: 1.00
//
1 50
bmy_02808T0/1-797 ---------- ---------M RTSQALASS- -------SRG AKGEK-----
ENSP00000358532/1-1227 MVLAAAMSQD ADPSGPEQPD RVACSVPGA- --RASPAPSG PRGMQQPPPP
BACU004640/1-1205 ------MSQD AEPSGPEQPD RDARSVPGA- -----PAPPG PRGMQ--PPP
ENSBTAP00000043544/1-1210 MVLAAAMSQD TEPSGPEQPD RDARSVPGAP APPAPPAPPG PRGMQ--PPP
51 100
bmy_02808T0/1-797 ---------- ---AIRPSGR IL-------- ---------- ----------
ENSP00000358532/1-1227 PQPPPPPQAG LPQIIQNAAK LLDKNPFSVS NPNPLLPSPA SLQLAQLQAQ
BACU004640/1-1205 P---PPPQAG LPQIIQNAAK LLDKTPFSVS NPNPLLPSPA SLQLAQLQAQ
ENSBTAP00000043544/1-1210 PPPPPPPQAS LPQIIQNAAK LLDKTPFSVS NPNPLLPSPA SLQLAQLQAQ
101 150
bmy_02808T0/1-797 ---------- ---------- ------LYRD SVSQDEPDIW RHCCT---PI
ENSP00000358532/1-1227 LTLHRLKLAQ TAVTNNTAAA TVLNQVLSKV AMSQPLFNQL RHPSVITGPH
BACU004640/1-1205 LTLHRLKLAQ TAVTNNTAAA TVLNQVLSKV AMSQPLFNQL RHPSMISSPH
ENSBTAP00000043544/1-1210 LTLHRLKLAQ TAVTNNTAAA TVLNQVLSKV AMSQPLFNQL RHPSMISAPH
151 200
bmy_02808T0/1-797 G--------- ---------- ---------- ---------- ----------
ENSP00000358532/1-1227 GHAGVPQHAA AIPSTRFPSN AIAFSPPSQT RGPGPSMNLP NQPPSAMVMH
BACU004640/1-1205 GHTGVPQHAA TLPSARFPSN AIAFSPPGQT RGPGPSVSLP SQPPNAIMMH
ENSBTAP00000043544/1-1210 GHTGVPQHAA TVPSTRFPSN ALAFSPPGQT RGPGPTVSLP SQPPNAMVMH
201 250
bmy_02808T0/1-797 ---------- ---------- --GEEVSSDW FYHYKLC--- ----------
ENSP00000358532/1-1227 PFTGVMPQTP GQPAVILGIG KTGPAPATAG FYEYGKASSG QTYGPETDGQ
BACU004640/1-1205 PFSGVMPQTP AQPAVILGIG KTAPAPAAAG FYEYGKANSG QAYGSETDGQ
ENSBTAP00000043544/1-1210 PF---MPQTP TQPAVILGLG KTGPAPAAAG FYEYGKASSG QAYGSETDGQ
251 300
bmy_02808T0/1-797 ---------- ---------- -----DALLV TNRDIKNRKS N--------P
ENSP00000358532/1-1227 PGFLPSSAST SGSVTYEGHY SHTGQDGQAA FSKDFYGPNS QGSHVASGFP
BACU004640/1-1205 PSFLPASAST SGSVTYEGHY SHSGQDGQAA FPKDFYGPNA QGSQVAGGFA
ENSBTAP00000043544/1-1210 PGFLPASAAT SGSVTYEGHY SHSGQDGQAA FPKDFYGPSA QGSQVAGGFV
301 350
bmy_02808T0/1-797 AEKAKGI--- ---------- ---------- ---------- ----------
ENSP00000358532/1-1227 AEQAGGLKSE VGPLLQGTNS QWESPHGFSG QSKPDLTAGP -MWPPPHNQP
BACU004640/1-1205 AEPAGGLKGE VGPLLQGPNS QWESPHGFSG QSKPDLTAVP NVWPPAPSQP
ENSBTAP00000043544/1-1210 AEPAGALKGE VGPLLQGPNS QWESPHGFSG QSKPDLAAAP SLWPPPPGQP
351 400
bmy_02808T0/1-797 ---------- ---------- ---------- ---------- ----------
ENSP00000358532/1-1227 YELYDPEEPT SDRTPPSFGG RLNNSKQGFI GAGRRAKEDQ ALLSVRPLQA
BACU004640/1-1205 YELYDPEEPT QDRTPPSFGG RLNNSKQGFS GAWRRATEEK ATLSVRPLQA
ENSBTAP00000043544/1-1210 YELYDPEEPT PDRTPPSFGG RLNNSKQGFS GARRRAKEEQ AVLSLRPLQA
401 450
bmy_02808T0/1-797 ---------- --------SV C--------- --------IH IDEC------
ENSP00000358532/1-1227 HELNDFHGVA PLHLPHICSI CDKKVFDLKD WELHVKGKLH AQKCLVFSEN
BACU004640/1-1205 HELNDFHGVA PLHLPHVCSI CDKKVFDLKD WELHVKGKLH AQKCLLFSEN
ENSBTAP00000043544/1-1210 HELNDFHGVA PLHLPHVCSI CDKKVFDLKD WELHVKGKLH AQKCLLFSEN
451 500
bmy_02808T0/1-797 --------GS DDLLVLRFRD SKVY------ ---SNIEV-- ----ARHMSH
ENSP00000358532/1-1227 AGIRCILGSA EGTLCASPNS TAVYNPAGNE DYASNLGTSY VPIPARSFTQ
BACU004640/1-1205 PAVQCVLGSA EGTLCASPNS TAVYNPAGNE DYSSNLGTSY AAIPVRSYTL
ENSBTAP00000043544/1-1210 AGVRCVLGPA EGTLCGSPNS TAVYNPAGTE DYSSNLGTSY AAIPARSFTQ
501 550
bmy_02808T0/1-797 PRP------- ---FAQWKTG AGRVVHICNL PEGSCTENDV INLGLPFGKV
ENSP00000358532/1-1227 SSPTFPLASV GTTFAQRK-G AGRVVHICNL PEGSCTENDV INLGLPFGKV
BACU004640/1-1205 SNPAFPSASP GTN---RKTG AGRVVHICNL PEGSCTENDV INLGLPFGKV
ENSBTAP00000043544/1-1210 SSPAFPSASP GTNFAQRKTG AGRVVHICNL PEGSCTENDV INLGLPFGKV
551 600
bmy_02808T0/1-797 TNYILMKSTN Q--------- ---------- ---------- ----------
ENSP00000358532/1-1227 TNYILMKSTN QAFLEMAYTE AAQAMVQYYQ EKSAVINGEK LLIRMSKRYK
BACU004640/1-1205 TNYILMKSTN QAFLEMAYTE AAQAMVQYYQ EKSAMINGEK LLIRMSKRYK
ENSBTAP00000043544/1-1210 TNYILMKSTN QAFLEMAYTE AAQAMVQYYR EKSAMINGEK LLIRMSKRYK
601 650
bmy_02808T0/1-797 -----KPGKT VAAIIQDIHS QRERDMFREA DRYGPERPRS RSPVSRSLSP
ENSP00000358532/1-1227 ELQLKKPGKA VAAIIQDIHS QRERDMFREA DRYGPERPRS RSPVSRSLSP
BACU004640/1-1205 ELQLKKPGKT VAAIIQDIHS QRERDMFREA DRYGPERPRS RSPVSRSLSP
ENSBTAP00000043544/1-1210 ELQLKKPGKT VAAIIQDIHS QRERDMFREA ERYAPERPRS RSPVSRSLSP
651 700
bmy_02808T0/1-797 RSHTPSFTSC SSSHSPLGPS RADWGNGRDS WEHSPYSRRE EERGPVPWRE
ENSP00000358532/1-1227 RSHTPSFTSC SSSHSPPGPS RADWGNGRDS WEHSPYARRE EERDPAPWRD
BACU004640/1-1205 RSHTPSFTSC SSSHSPLGPS RADWGNGRDS WEHSPYARRE EERGPVPWRE
ENSBTAP00000043544/1-1210 RSHTPSFTSC SSSHSPPGPS RADWGNGRDS WEHSPYARRE ----------
701 750
bmy_02808T0/1-797 NGEDKRERTD TWAHDRKQYP RQLDKAELDE RLEGGRGYRE RHPRSGSPNP
ENSP00000358532/1-1227 NGDDKRDRMD PWAHDRKHHP RQLDKAELDE RPEGGRPHRE KYPRSGSPNL
BACU004640/1-1205 NGEDKRERTD TWAHDRKQYP RQLDKAELDE RLEGGRGYRE RHPRSGSPNP
ENSBTAP00000043544/1-1210 NGEDKRDRMD TWAHDRKHYP RQLDKAELDE RLEVGRGYRE KHPRSGSPNP
751 800
bmy_02808T0/1-797 LHSASGYKSR EDGYYRKESK GKSDRYLKQQ QDVPGRSRRK NEARLREGRH
ENSP00000358532/1-1227 PHSVSSYKSR EDGYYRKEPK AKWDKYLKQQ QDAPGRSRRK DEARLRESRH
BACU004640/1-1205 LHSASGYKSR EDGYYRKESK GKSDRYLKQQ QDVPGRSRRK NEARLREGRH
ENSBTAP00000043544/1-1210 LHSASGYKSR EDGYHRKESK GKSDKYLKPQ QDAPGRSRRK DEARLREGRH
801 850
bmy_02808T0/1-797 PPADDSGRED GLEPK----- -GTKSKQSEK TRTKRPDRDQ EGA-DRKESR
ENSP00000358532/1-1227 PHPDDSGKED GLGPKVTRAP EGAKAKQNEK NKTKRTDRDQ EGADDRKENT
BACU004640/1-1205 PPPDDSGRED GLEPK----- -GTKSKQSEK TRTKRPDRDQ EGA-DRKESR
ENSBTAP00000043544/1-1210 PHADDAGRED GLEPK----- -GTKSKQSEK NRAKRSDRDQ EGADDRKE-R
851 900
bmy_02808T0/1-797 MAENEAEKEE QDSMEESPLH LGRQEKETES FDAENTKARK EQDSESGSEA
ENSP00000358532/1-1227 MAENEAGKEE QEGMEESPQS VGRQEKEAEF SDPENTRTKK EQDWESESEA
BACU004640/1-1205 MAENEAEKEE QDSVEESPLH LGRQEKETES FDAENTKARK EQDLESGSEA
ENSBTAP00000043544/1-1210 MAENEAGKEE QDSMEESPPS VGRQEKETES SDTENRRARK EQDSESGSEA
901 950
bmy_02808T0/1-797 EGESWYPTNM EELVTVDEVG EEEDFIMEPD IPELEEIVPI EQKDKICPEI
ENSP00000358532/1-1227 EGESWYPTNM EELVTVDEVG EEEDFIVEPD IPELEEIVPI DQKDKICPET
BACU004640/1-1205 EGESWYPTNM EELVTVDEVG EEEDFIMEPD IPELEEIVPI EQKDKICPEI
ENSBTAP00000043544/1-1210 EGESWYPTNM EELVTVDEVG EEEDFIMEPD IPELEEIVPI DQKDRISAEI
951 1000
bmy_02808T0/1-797 CPCVTTTLDL DLAKEFTKEG VKTIGNEAAE ISLKLPKELP SASMSCPSDM
ENSP00000358532/1-1227 CLCVTTTLDL DLAQDFPKEG VKAVGNGAAE ISLKSPRELP SASTSCPSDM
BACU004640/1-1205 CPCVTTTLDL DLAKEFTKEG VKTIGNEAAE ISLKSPKALP SASMSCPSDM
ENSBTAP00000043544/1-1210 CPCVTTALDL DFTKGFAKEG VKTIGNGAGE ISLKSPEELP SASTGCPSDM
1001 1050
bmy_02808T0/1-797 DVEMPGLNLD VERKPAECET GLSLEGSDCC EKQAKGAESS DVRLAPTLQQ
ENSP00000358532/1-1227 DVEMPGLNLD AERKPAESET GLSLEDSDCY EKEAKGVESS DVHPAPTVQQ
BACU004640/1-1205 DVETPGLNLD VERKPAECET GLSLEGSDCC EKQAEGAESS DVRLAPTLQQ
ENSBTAP00000043544/1-1210 DVEMPGLNLD AERKPAECET GLSLEGSDCY EKPAKGGESS DVRLAPPLLQ
1051 1100
bmy_02808T0/1-797 MSSPKPAEER AWQPGPFLDD CKARGTLEDG AGEGSPLEEK ASPLTETDLQ
ENSP00000358532/1-1227 MSSPKPAEER ARQPSPFVDD CKTRGTPEDG ACEGSPLEEK ASPPIETDLQ
BACU004640/1-1205 MSSPKPAEER AWQPGPFLDD CKARGTLEDG AGEGSPLEEK ASPLTETDLQ
ENSBTAP00000043544/1-1210 MSSPKPAEER AWQPGPFLDD CKARGTPEDG AGEGSPLEEK AGPPTETDLQ
1101 1150
bmy_02808T0/1-797 SQACQGVSTQ DNSRYMEMKS LDVRSLEYAE VELKQPLSLP SWEPEDVFRE
ENSP00000358532/1-1227 NQACQEVLTP ENSRYVEMKS LEVRSPEYTE VELKQPLSLP SWEPEDVFSE
BACU004640/1-1205 SQACQGVSTQ DNSRYMEMKS LDVRSLEYAE VELKQPLSLP SWEPEDVFRE
ENSBTAP00000043544/1-1210 SQACQGASTP ENSRYSEMKS LDVRSLEDAE VELKQPLSLP SWEPEDVFSE
1151 1200
bmy_02808T0/1-797 LSIPLGGHCK SFINKSISPR GA--SQHGGS PFPSSFLFSF SSA-----FK
ENSP00000358532/1-1227 LSIPLG---- ---VEFVVPR TGFYCKLCGL FYTSEETAKM SHCRSAVHYR
BACU004640/1-1205 LSIPLG---- ---VEFVVPR TGFYCKLCGL FYTSEEMAKM SHCRSAVHYR
ENSBTAP00000043544/1-1210 LSIPLG---- ---VEFVVPR TGFYCKLCGL FYTSEEMAKM SHCRSAVHYR
1201 1250
bmy_02808T0/1-797 NFILVPFSQI RRANFLFFKR MSLLHSVQYA LGQKLKKANT H
ENSP00000358532/1-1227 NLQKY-LSQL AEEGLKETEG ADSPRPEDSG IVPRFERKKL -
BACU004640/1-1205 NLQKY-LSQL AKEGLMETEG AGSPRPEDSG IVPHFERKKL -
ENSBTAP00000043544/1-1210 NLQKY-LSQL AEEGLKETER AGSPRPQDSG IVPHFERKKL -