KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:54:52 2014 Check: 00 .. Name: BACU000835/1-254 Len: 304 Check: 8500 Weight: 1.00 Name: bmy_16216T0/1-258 Len: 304 Check: 2382 Weight: 1.00 Name: ENSP00000420919/1-249 Len: 304 Check: 5922 Weight: 1.00 Name: ENSBTAP00000043567/1-249 Len: 304 Check: 5324 Weight: 1.00 // 1 50 BACU000835/1-254 ---------- ---------- ---------- ---------- MLEPGEWYT- bmy_16216T0/1-258 MKADIAEVLR NVAALVQTQG TGMDGKKCSI WMFLPLVFTL FTSAGLWIVY ENSP00000420919/1-249 ---------- ---------- --MDGKKCSV WMFLPLVFTL FTSAGLWIVY ENSBTAP00000043567/1-249 ---------- ---------- --MDGKKCSV WMFLPLVFTV FTSAGLWIVY 51 100 BACU000835/1-254 ------SRVH WREMSNTDSG TDCVLLGRVA QTTWMVNV-- -KSHFGVCFG bmy_16216T0/1-258 FIAVEDDKIF PLNSAERTSG VKHAPYIRFS DDNLIQK--- ---------- ENSP00000420919/1-249 FIAVEDDKIL PLNSAERKPG VKHAPYISIA GDDPPASCVF SQVMNMAAFL ENSBTAP00000043567/1-249 FIAVEDDKIF PLNSAERKPG VKHAPYISIA GDEPPASCVF SQVMNMAAFL 101 150 BACU000835/1-254 TLVVAVLRFI QLKPKVLNPW LNISGLVALC LASFGMTLLG NFQLTNDEEI bmy_16216T0/1-258 TLVVAVLRFI QLKPKVLNPW LNISGLVALC XASFGMTLLG NFQLTSDEEI ENSP00000420919/1-249 ALVVAVLRFI QLKPKVLNPW LNISGLVALC LASFGMTLLG NFQLTNDEEI ENSBTAP00000043567/1-249 ALVVAVLRFI QLKPKVLNPW LNISGLVALC LASFGMTLLG NFQLTNDEEI 151 200 BACU000835/1-254 HNVGTSLTFG FGTLACWIQA ALTLKVNIKN EGRKVGIPRV ILSASVTLCV bmy_16216T0/1-258 HNVGTSLTFG FGTLACWIQA ALTLKVNIKN EGRKVGIPRV ILSASVTLCV ENSP00000420919/1-249 HNVGTSLTFG FGTLTCWIQA ALTLKVNIKN EGRRVGIPRV ILSASITLCV ENSBTAP00000043567/1-249 HNVGTSLTFG FGTLTCWIQA ALTLKVNIKN EGRKVGIPRV ILSASITLCV 201 250 BACU000835/1-254 VLWGEPGFSC NLSLPRKQPR LNVADGGTCL DYFPPDFILM AQGIHLYAAR bmy_16216T0/1-258 VLY------- ---------- ---------- ------FILM AQGIHLYAAR ENSP00000420919/1-249 VLY------- ---------- ---------- ------FILM AQSIHMYAAR ENSBTAP00000043567/1-249 VLY------- ---------- ---------- ------FILM AQGIHMYAAR 251 300 BACU000835/1-254 VQWGLVMCFL SYFGTFAVEF RHYRYEIVCS EHQETFLSFS ESLSEASEYQ bmy_16216T0/1-258 VQWGLVMCFL SYFGTFAVEF RHYRYEIVCS EYQETFLSFS ESLSEASEYQ ENSP00000420919/1-249 VQWGLVMCFL SYFGTFAVEF RHYRYEIVCS EYQENFLSFS ESLSEASEYQ ENSBTAP00000043567/1-249 VQWGLVMCFL SYFGTFAVEF RHYRYEIVCS EYQENFLSFS ESLSEASEYQ 301 350 BACU000835/1-254 TDQV bmy_16216T0/1-258 TDQV ENSP00000420919/1-249 TDQV ENSBTAP00000043567/1-249 TDQV