KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:54:53 2014 Check: 00 .. Name: bmy_05440T0/1-1065 Len: 1260 Check: 1798 Weight: 1.00 Name: ENSBTAP00000043570/1-1222 Len: 1260 Check: 4030 Weight: 1.00 Name: BACU012925/1-1054 Len: 1260 Check: 6029 Weight: 1.00 Name: ENSTTRP00000009774/1-1260 Len: 1260 Check: 9950 Weight: 1.00 // 1 50 bmy_05440T0/1-1065 MRERRGVGPP GSVVVVATVV LLLSGVGPAR GSEDIV---- ---------- ENSBTAP00000043570/1-1222 MRGRRGMGPP EPAVVAATVL LLLSRVEPAC GSEDIVVGCG GFVKSDVEIN BACU012925/1-1054 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009774/1-1260 MRERRRVGPP GSVVVVATVM LLLSGVGPAR GSEDIVVGCG GFVKSDVEIN 51 100 bmy_05440T0/1-1065 -----IKLYT KHGTLKYQTD CAPNNGYFMI PLYDKGDFIL KIEPPLGWSF ENSBTAP00000043570/1-1222 YSLIEIKLYT KHGTLKYQTD CAPNNGYFMI PLYDKGDFIL KIEPPLGWSF BACU012925/1-1054 ---------- ---------- --------MI PLYDKGDFIL KIEPPLGWSF ENSTTRP00000009774/1-1260 YSLIEIKLYT KHGTLKYQTD CAPNNGYFMI PLYDKGDFIL KIEPPLGWSF 101 150 bmy_05440T0/1-1065 EPTTVELYVD GVSDICTKGG DVNFVFTGFS VNGK------ ---------- ENSBTAP00000043570/1-1222 EPTTVELYVD GVSDICTKGG DINFVFTGFS VSGKVLSKGQ PLGPAGVQVS BACU012925/1-1054 EPTTVELYVD GVSDICTKGG DVNFVFTGFS VNGK------ ---------- ENSTTRP00000009774/1-1260 EPTTVELYVD GVSDICTKGG DVNFVFTGFS VNGKVLSKGQ PLGPAGVQVS 151 200 bmy_05440T0/1-1065 ---------- ---------- ---------- ---------- ----ASTTVR ENSBTAP00000043570/1-1222 LRNTGTDAKI QSTVTQPGGK FAFFKVLPGD YEILATHPTW PLKEASTTVR BACU012925/1-1054 ---------- ---------- ---------- ---------- ----ASTTVR ENSTTRP00000009774/1-1260 LRNTGTEAKI QSTVTQPGGK FAFFKVLPGD YEILATHPTW PLKEASTTVR 201 250 bmy_05440T0/1-1065 VTTSNANAAG PLIVAGYNVS GSVRSDGEPM KGVKFLLFSS LVTKEDVLGC ENSBTAP00000043570/1-1222 VTNSNANAAG PLIVAGYNVS GSVRSDGEPM KGVKFLLFSS LVTKEDVLGC BACU012925/1-1054 VTTSNANAAG PLIVAGYNVS GSVRSDGEPM KGVKFLLFSS LVTKEDVLGC ENSTTRP00000009774/1-1260 VTTSNANAAG PLIVAGYNVS GSVRSDGEPM KGVKFLLFSS LVTKEDVLGC 251 300 bmy_05440T0/1-1065 NISPVPGFQP QDESLVYLCH AVSKEDGSFS FYSLPSGGYT VIPFYRGERI ENSBTAP00000043570/1-1222 NLSPVPGFQP QDESLEYLCH AVSKEDGSFS FYSLPSGGYT VIPFYRGERI BACU012925/1-1054 NISPVPGFQP QDESLVYLCH AVSKEDGSFS FYSLPSGGYT V--------- ENSTTRP00000009774/1-1260 NISPVPGFQP QDESLVYLCH TVSKEDGSFS FSSLPSGGYT VIPFYRGERI 301 350 bmy_05440T0/1-1065 TFDVAPSRLD FTVEHDSLKI EPVFHVMGFS VTGRVLNGPE GEGVPDAVVT ENSBTAP00000043570/1-1222 TFDVAPSRLD FTVEHDSLKI EPVFHVMGFS VTGRVLNGPE GEGVPDAVVT BACU012925/1-1054 ---------- ---------- -PVFHVMGFS VTGRVLNGPE GEGVPDAVVT ENSTTRP00000009774/1-1260 TFDVAPSRLD FTVEHDSLKI EPVFHVMGFS VTGRVLNGPE GEGVPDAVVT 351 400 bmy_05440T0/1-1065 LNNQIKVKTK ADGSFRLENI TTGTYTIHAQ KEHLYFETVS IKIAPNTPQL ENSBTAP00000043570/1-1222 LNSQIKVRTK ADGSFRLENI TTGTYTIHAQ KEHLYFETVT IKIAPNTPQL BACU012925/1-1054 LNNQIKVRTK ADGSFRLENI TTGTYTIHAQ KEHLYFETVS IKIAPNTPQL ENSTTRP00000009774/1-1260 LNNQIKVKTK ADGSFRLENI TTGTYTIHAQ KEHLYFETVS IKIAPNTPQL 401 450 bmy_05440T0/1-1065 ADIIATGFSV CGQISIIRFP DTVKQMSKYK VVLSSQDKDK SLVTVEMDAQ ENSBTAP00000043570/1-1222 ADIIATGFSV CGQISITRFP DTVKQMGKYK VVLASQDKDK SLVTVETDAQ BACU012925/1-1054 ADIIATGFSV CGQISIIRFP DTVKQMSKYK VVLSSQDKDK SLVTVEMDAQ ENSTTRP00000009774/1-1260 ADIIATGFSV CGQISIIRFP DTIKQMSKYK VVLSSQDKDK SLVTVEMDAQ 451 500 bmy_05440T0/1-1065 GSFCFKAKPG TYKVQVMVPE AETRAGLMLK PQTLLLAVTD RPVMDVAFVQ ENSBTAP00000043570/1-1222 GSFCFKAKPG TYKVQVMVPE AETRAGLTLK PQTLLLAVTD RPVMDVAFVQ BACU012925/1-1054 GSFCFKAKPG TYKVQVMVPE AETRAGLMLK PQTLLLAVTD RPVMDVAFVQ ENSTTRP00000009774/1-1260 GSFCFKAKPG TYKVQVMVPE AETRAGLMLK PQMLLLAVTD RPVMDVAFVQ 501 550 bmy_05440T0/1-1065 FLASVSGKVS CLDTCGDLLV TLQSLSRQGE KRSLQLSGKV NLMTFTFDNV ENSBTAP00000043570/1-1222 FLASVSGKVS CLDTCGDLLV TLQSLSRQGE KRSLHLSGKV NSMTFMFDNV BACU012925/1-1054 FLASVSGKVS CLDTCGDLLV TLQSLSRQGE KRSLQLSGKV NSMTFTFDNV ENSTTRP00000009774/1-1260 FLASVSGKVS CLDTCGDLLV TLQSLSRQGE KRSLQLSGKV NSMTFTFDNV 551 600 bmy_05440T0/1-1065 LPGKYKISIL HEDWCWKNKS LEVEVLEDDV STIEFRQTGY MLRCSLSHAI ENSBTAP00000043570/1-1222 LPGKYKISIL HEDWCWKNKS LEVEVLEDDV SAVEFRQTGY MLRCSLSHAI BACU012925/1-1054 LPGKYKISIL HEDWCWKNKS LEVEVLEDDV SAIEFRQTGY MLRCSLSHAI ENSTTRP00000009774/1-1260 LPGKYKISIL HEDWCWKNKS LEVEVLEDDV SAIEFRQTGY MLRCSLSHAI 601 650 bmy_05440T0/1-1065 TLEFYQDGNG PENVGIYNLS KGVNRFCLSK PGVYKVTPRS CHRFEQAFYT ENSBTAP00000043570/1-1222 TLEFYQDGNG PENVGIYNLS KGVNRFCLSK PGVYKVTPRS CHRFEQAFYT BACU012925/1-1054 TLEFYQDGNG PENVGIYNLS KGVNRFCLSK PGVYKVTPRS CHRFEQAFYT ENSTTRP00000009774/1-1260 TLEFYQDGNG PENVGIYNLS KGVNRFCLSK PGVYKVTPRS CHRFEQAFYT 651 700 bmy_05440T0/1-1065 YDTSSPSILT LTAIRHHVLG TITTDKMMDV TVTIKSSIDS EPALVLGPLR ENSBTAP00000043570/1-1222 YDTSSPSILT LTAIRHHVLG TITTDKMMDV TVTIKSSIDS EPALVLGPLK BACU012925/1-1054 YDTSSPSILT LTAIRHHVLG TITTDKMMDV TVTIKSSIDS EPALVLGPLR ENSTTRP00000009774/1-1260 YDTSSPSILT LTAIRHHVLG TITTDKMMDV TVTIKSSIDS EPALVLGPLR 701 750 bmy_05440T0/1-1065 SVQELRREQQ LAEIESRRQE REKTGGEEGV EGRTKPPVQE MVDELQGPFS ENSBTAP00000043570/1-1222 SVQELRREQQ LAEIESRRQE RERSGGEAGG EGRTKPPVQE MVDELQGPFF BACU012925/1-1054 SVQELRREQQ LAEIESRRQE REKTGGEEGV EGRTKPPVQE MVDELQGPFS ENSTTRP00000009774/1-1260 SMQELRREQQ LAEIESRRQE REKTGGEEGV EGRTKPPVQE MVDELQGPFS 751 800 bmy_05440T0/1-1065 YDFSYWARSG EKITVTPSSK ELLFYPPSME ATVSGESCPG KLIEIQGKAG ENSBTAP00000043570/1-1222 YDFSYWARSG EKITVTPSSK ELLFYPPSME ATVSGESCPG KLIEIQGKAG BACU012925/1-1054 YDFSYWARSG EKITVTPSSK ELLFYPPSME ATVSGESCPG KLIEIQGKAG ENSTTRP00000009774/1-1260 YDFSYWARSG EKITVTPSSK ELLFYPPSME ATVSGESCPG KLIEIQGKAG 801 850 bmy_05440T0/1-1065 LFLEGQIHPE LEGVEIVISE KGASSPLITV FTDDKGAYRM QNVF--LSCL ENSBTAP00000043570/1-1222 LFLEGQIHPE LEGVEIVISE KGASSPLITV FTDDKGAYSV GPLHSDLEYT BACU012925/1-1054 LFLEGQIHPE LEGVEIVISE KGASSPLITV FTDDKGAYSV GPLHSDLEYT ENSTTRP00000009774/1-1260 LFLEGQIHPE LEGVEIVISE KGASSPLITV FTDDKGAYSV GPLHSDLEYT 851 900 bmy_05440T0/1-1065 SPSWEEACCV MD-------- ---------- RIKAEDDQPL PGVLLSLSGG ENSBTAP00000043570/1-1222 VSSQKEGYVL TAVEGTIGDF KAYALAGVSF EIKAEDDQPL PGVLLSLSGG BACU012925/1-1054 VSSQKEGYVL TAVEGTVGDF KAYALAGVSF EIKAEDDQPL PGVLLSLSGG ENSTTRP00000009774/1-1260 VSSQKEGYVL TAVEGTIGDF KAYALAGVSF EIKAEDDQPL PGVLLSLSGG 901 950 bmy_05440T0/1-1065 VFRSNLLTQD NGILTFSNLS PGQYYFKPMM KEFRFEPSSQ MIEVQEGQNL ENSBTAP00000043570/1-1222 VFRSNLLTQD NGILTFSNLS PGQYYFKPMM KEFRFEPSSQ MIEVQEGQNL BACU012925/1-1054 VFRSNLLTQD NGILTFSNLS PGQYYFKPMM KEFRFEPSSQ MIEVQEGQNL ENSTTRP00000009774/1-1260 VFRSNLLTQD NGILTFSNLS PGQYYFKPMM KEFRFEPSSQ MIEVQEGQNL 951 1000 bmy_05440T0/1-1065 KITITGYRTA YSCYGTVSSL NGEPEQGVAV EAVGQNDCSI YGEDTVTDEE ENSBTAP00000043570/1-1222 KITITGYRTA YSCYGTVSSL NGEPEQGVAV EAVGQSDCSI YGEDTVTDEE BACU012925/1-1054 KITITGYRTA YSCYGTVSSL NGEPEQGVAV EAVGQNDCSI YGEDTVTDEE ENSTTRP00000009774/1-1260 KITITGYRTA YSCYGTVSSL NGEPEQGVAV EAVGQNDCSI YGEDTVTDEE 1001 1050 bmy_05440T0/1-1065 GKFRLRGLLP GCVYHVQLKA EGNDHIERAL PHHRVIAVGN NDIDDVNIIV ENSBTAP00000043570/1-1222 GKFRLRGLLP GCVYHVQLKA EGNDHIERAL PHHRVIVVGN NDIDDVNIIV BACU012925/1-1054 GKFRLRGLLP GCVYHVQLKA EGNDHIERAL PHHRVIAVGN NDIDDVNIIV ENSTTRP00000009774/1-1260 GKFRLRGLLP GCVYHVQLKA EGNDHIERAL PHHRVIAVGN NDIDDVNIIV 1051 1100 bmy_05440T0/1-1065 FRQINQFDLS GNVITSSEYL PTLWVKLYKS DNLDNPIQTV SLGQSLFFHF ENSBTAP00000043570/1-1222 FRQINQFDLS GNVITSSEYL PTLWVKLYKS DNLDNPIQTV SLGQSLFFHF BACU012925/1-1054 FRQINQFDLS GNVITSSEYL PTLWVKLYKS DNLDNPIQTV SLGQSLFFHF ENSTTRP00000009774/1-1260 FRQINQFDLS GNVITSSEYL PTLWVKLYKS DNLDNPIQTV SLGQSLFFHF 1101 1150 bmy_05440T0/1-1065 PPLLRDGQNY VVLLDSTLPR SQYDYVLPQV SFTAVGYHKH ITLIFNPTFR ENSBTAP00000043570/1-1222 PPLLRDGQNY VVLLDSTLPR SQYDFVLPQV SFTAAGYHKH ITLVFNPTRK BACU012925/1-1054 PPLLRDGQNY VVLLDSTLPR SQYDYVLPQV SFTAVGYHKH ITLIFNPTRK ENSTTRP00000009774/1-1260 PPLLRDGQNY VVLLDSTLPR SQYDYVLPQV SFTAVGYHKH ITLIFNPTRK 1151 1200 bmy_05440T0/1-1065 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000043570/1-1222 LPEQDIAQGS YIALPLTLLV LLAGYNHDKL IPLLLQLTSR LQGVRALGQT BACU012925/1-1054 LPEQDIAQGS YIALPLTLLI LLAGYNHDKL IPLLLQLTSR LQGVRALGQA ENSTTRP00000009774/1-1260 LPEQDIAQGS YIALPLTLLI LLAGYNHDRL IPLLLQLTSR LQGVRALGQA 1201 1250 bmy_05440T0/1-1065 -SAETRSENA KETST----- ---------- ---------- ---------- ENSBTAP00000043570/1-1222 ASDNSGPEDA KRQAKKQKTR RT-------- ---------- ---------- BACU012925/1-1054 ASDGSGSEDA KRQAKKQKTR RT-------- ---------- ---------- ENSTTRP00000009774/1-1260 ASDSSGPEDA KRQAKKQKTR RLHFQEEFMG ALAPSSTCWI DSPFPCAVEV 1251 1300 bmy_05440T0/1-1065 ---------- ENSBTAP00000043570/1-1222 ---------- BACU012925/1-1054 ---------- ENSTTRP00000009774/1-1260 LLETTARVYY