KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:54:57 2014 Check: 00 .. Name: ENSTTRP00000010778/1-1369 Len: 1379 Check: 9015 Weight: 1.00 Name: ENSP00000357047/1-1368 Len: 1379 Check: 3413 Weight: 1.00 Name: ENSBTAP00000043641/1-1368 Len: 1379 Check: 4354 Weight: 1.00 Name: bmy_12937T0/1-1231 Len: 1379 Check: 3714 Weight: 1.00 Name: BACU014302/1-1063 Len: 1379 Check: 1956 Weight: 1.00 // 1 50 ENSTTRP00000010778/1-1369 ---MET-LQS IFEEVVXXXX XXXXXXXMFM DTPEDEKTKL ISCLGAFRQF ENSP00000357047/1-1368 ---METQLQS IFEEVVKTEV IEEAFPGMFM DTPEDEKTKL ISCLGAFRQF ENSBTAP00000043641/1-1368 ---METQLQS IFEEVVKTEI IEEAFPGMFM DTPEDEKTKL ISCLGAFRQF bmy_12937T0/1-1231 MVQMETQLQS IFEEVVKTEI IEEAFPGMFM DTPEDEKTKL ISCLGAFRQF BACU014302/1-1063 MVQMETQLQS IFEEVVKTEI IEEAFPGMFM DTPEDEKTKL ISCLGAFRQF 51 100 ENSTTRP00000010778/1-1369 WGGLSQESHE QCIQWIVKFI H-QHSPKRIS FLYDCLAMAV ETGLLPPTMV ENSP00000357047/1-1368 WGGLSQESHE QCIQWIVKFI HGQHSPKRIS FLYDCLAMAV ETGLLPPRLV ENSBTAP00000043641/1-1368 WAGLSQESHE QCIQWIVKFI HGQHSPKRIS FLYDCLAMAV ETGLLPPRMV bmy_12937T0/1-1231 WGGLSQESHE QCIQWIVKFI HGQHSPKRIS FLYDCLAMAV ETGLLPPRMV BACU014302/1-1063 WGGLSQESHE QCIQWIVKFI HGQHSPKRIS FLYDCLAMAV ETGLLPPRMV 101 150 ENSTTRP00000010778/1-1369 CESLINSDTL EWERTQLWAL TFKLVRKIIG GVDYKGVRDL LKVILEKTLT ENSP00000357047/1-1368 CESLINSDTL EWERTQLWAL TFKLVRKIIG GVDYKGVRDL LKVILEKILT ENSBTAP00000043641/1-1368 CESLINSDTL EWERTQLWAL TFKLVRKIIG GVDYKGVRDL LKVILEKILT bmy_12937T0/1-1231 CESLINSDTL EWERTQLWAL TFKLVRKIIG GVDYKGVRDL LKVILEKTLT BACU014302/1-1063 CESLINSDTL EWERTQLWAL TFKLVRKIIG GVDYKGVRDL LKVILEKTLT 151 200 ENSTTRP00000010778/1-1369 IPNTVSSAVV QQLLAAREVI AYILERNACL LPAYFAVTEI RKLYPEGKLP ENSP00000357047/1-1368 IPNTVSSAVV QQLLAAREVI AYILERNACL LPAYFAVTEI RKLYPEGKLP ENSBTAP00000043641/1-1368 IPNTVSSAVV QQLLAAREVI AYILERNACL LPAYFAVTEI RKLYPEGKLP bmy_12937T0/1-1231 IPNTVSSAVV QQLLAAREVI AYILERNACL LPAYFAVTEI RKLYPEGKLP BACU014302/1-1063 IPNTVSSAVV QQLLAARE-- ---------- ---------- ---------- 201 250 ENSTTRP00000010778/1-1369 HWLLGNLVSD FVDTFRPTAR INSICGRCSL LPVVNNSGAI CNSWKLDPAT ENSP00000357047/1-1368 HWLLGNLVSD FVDTFRPTAR INSICGRCSL LPVVNNSGAI CNSWKLDPAT ENSBTAP00000043641/1-1368 HWLLGNLVSD FVDTFRPTAR INSICGRCSL LPVVNNSGAI CNSWKLDPTT bmy_12937T0/1-1231 HWLLGNLVSD FVDTFRPTAR INSICGRCSL LPVVNNSGAI CNSWKLDPAT BACU014302/1-1063 --LLGNLVSD FVDTFRPTAR INSICGRCSL LPVVNNSGAI CNSWKLDPAT 251 300 ENSTTRP00000010778/1-1369 LRFPLKGLLP YDKDLFEPQT ALLRYVLEQP YSRDMVCNML GLNKQTLNIA ENSP00000357047/1-1368 LRFPLKGLLP YDKDLFEPQT ALLRYVLEQP YSRDMVCNML GLNK------ ENSBTAP00000043641/1-1368 LRFPLKGLLP YDKDLFEPQT ALLRYVLEQP YSRDMVCNML GLNK------ bmy_12937T0/1-1231 LRFPLKGLLP YDKDLFEPQT ALLRYVLEQP YSRDMVCNML GLNK------ BACU014302/1-1063 LRFPLKGLLP YDKDLFEPQT ALLRYVLEQP YSRDMVCNML GLNK------ 301 350 ENSTTRP00000010778/1-1369 QHKQRCPVLE DQLVDLVVYA MERSETEEKF DDGGTSQLLW QHLSSQLIFF ENSP00000357047/1-1368 QHKQRCPVLE DQLVDLVVYA MERSETEEKF DDGGTSQLLW QHLSSQLIFF ENSBTAP00000043641/1-1368 QHKQRCPVLE DQLVDLVVYA MERSETEEKF DDGGTSQLLW QHLSSQLIFF bmy_12937T0/1-1231 QHKQRCPVLE DQLVDLVVYA MERSETEEKF DDGGTSQLLW QHLSSQLIFF BACU014302/1-1063 QHKQRCPVLE DQLVDLVVYA MERSETEEKF DDGGTSQLLW QHLSSQLIFF 351 400 ENSTTRP00000010778/1-1369 VLFQFASFPH MVLSLHQKLA GRGLIKGRDH LMWVLLQFIS GSIQKNALAD ENSP00000357047/1-1368 VLFQFASFPH MVLSLHQKLA GRGLIKGRDH LMWVLLQFIS GSIQKNALAD ENSBTAP00000043641/1-1368 VLFQFASFPH MVLSLHQKLA GRGLIKGRDH LMWVLLQFIS GSIQKNALAD bmy_12937T0/1-1231 VLFQFASFPH MVLSLHQKLA GRGLIKGRDH LMWVLLQFIS GSIQKNALAD BACU014302/1-1063 VLFQFASFPH MVLSLHQKLA GRGLIKGRDH LMWVLLQFIS GSIQKNALAD 401 450 ENSTTRP00000010778/1-1369 FLPVMKLFDL LYPEKEFIPV PDINKPQSTH AFAMTCIWIH LNRKAQNDNS ENSP00000357047/1-1368 FLPVMKLFDL LYPEKEYIPV PDINKPQSTH AFAMTCIWIH LNRKAQNDNS ENSBTAP00000043641/1-1368 FLPVMKLFDL LYPEKEFIPV PDINKPQSTH AFAMTCIWIH LNRKAQNDNS bmy_12937T0/1-1231 FLPVMKLFDL LYPEKE---- ---------- ---------- ---------- BACU014302/1-1063 FLPVMKLFDL LYPEKEFIPV PDINKPQSTH AFAMTCIWIH LNRKAQNDNS 451 500 ENSTTRP00000010778/1-1369 KLQIPIPHSL KLHHEFLQQS LRNKSLQMND YKIALLCNAY STNSECFTLP ENSP00000357047/1-1368 KLQIPIPHSL RLHHEFLQQS LRNKSLQMND YKIALLCNAY STNSECFTLP ENSBTAP00000043641/1-1368 KLQIPIPHSL KLHHEFLQQS LRNKSLQMND YKIALLCNAY STNSECFTLP bmy_12937T0/1-1231 ---------- ---------S LRNKSLQMND YKIALLCNAY STNSECFTLP BACU014302/1-1063 KLQIPIPHSL KLHHEFLQQS LRNKSLQMND YKIALLCNAY STNSECFTLP 501 550 ENSTTRP00000010778/1-1369 MGALVETIYG NGIMRIPLPG TSCLASGSIT PLPMNLLDSL TVHAKMSLIH ENSP00000357047/1-1368 MGALVETIYG NGIMRIPLPG TNCMASGSIT PLPMNLLDSL TVHAKMSLIH ENSBTAP00000043641/1-1368 MGALVETIYG NGIMRIPLPG TSCLASGSIT PLPMNLLDSL TVHAKMSLIH bmy_12937T0/1-1231 MGALVETIYG NGIMRIPLPG TSCLASGSIT PLPMNLLDSL TVHAKMSLIH BACU014302/1-1063 MGALVETIYG NGIMRIPLPG TSCLASGSIT PLPMNLLDSL TVHAKMSLIH 551 600 ENSTTRP00000010778/1-1369 SIAT-TVKLA HAKSSVALAP ALVETYTRLL FYMEIQSVGI KGFISQLLPT ENSP00000357047/1-1368 SIATRVIKLA HAKSSVALAP ALVETYSRLL VYMEIESLGI KGFISQLLPT ENSBTAP00000043641/1-1368 SIATRVIKLA HAKSSVALAP ALVETYSRLL VYMEIESLGI KGFISQLLPT bmy_12937T0/1-1231 SIATRVIKLA HAKSSVALAP ALVETYSRLL VYMEIESLGI KGFISQLLPT BACU014302/1-1063 SIATRVIKLA HAKSSVALAP ALVETYSRLL VYMEIESLGI KGFISQLLPT 601 650 ENSTTRP00000010778/1-1369 VFKSHAWGIL HTLLEMFSYR MHHIQPHYRV QLLSHLHTLA AVAQTNQNQL ENSP00000357047/1-1368 VFKSHAWGIL HTLLEMFSYR MHHIQPHYRV QLLSHLHTLA AVAQTNQNQL ENSBTAP00000043641/1-1368 VFKSHAWGIL HTLLEMFSYR MHHIQPHYRV QLLSHLHTLA AVAQTNQNQL bmy_12937T0/1-1231 VFKSHAWGIL HTLLEMFSYR MHHIQPHYRV QLLSHLHTLA AVAQTNQNQL BACU014302/1-1063 VFKSHAWGIL HTLLEMFSYR MHHIQPHYRV QLLSHLHTLA AVAQTNQNQL 651 700 ENSTTRP00000010778/1-1369 HLCVESTALR LITALGSSEV QPQFTRFLSD PKTVLSAESE ELNRALILTL ENSP00000357047/1-1368 HLCVESTALR LITALGSSEV QPQFTRFLSD PKTVLSAESE ELNRALILTL ENSBTAP00000043641/1-1368 HLCVESTALR LITALGSSEV QPQFTRFLSD PKTVLSAESE ELNRALILTL bmy_12937T0/1-1231 HLCVESTALR LITALGSSEV QPQFTRFLSD PKTVLSAESE ELNRALILTL BACU014302/1-1063 HLCVESTALR LITALGSSEV QPQFTRFLSD PKTVLSAESE ELNRALILTL 701 750 ENSTTRP00000010778/1-1369 ARATHVTDFF TGSDSIQGTW CKDILQTIMS FTPHNWASHT LSCFPGPLQA ENSP00000357047/1-1368 ARATHVTDFF TGSDSIQGTW CKDILQTIMS FTPHNWASHT LSCFPGPLQA ENSBTAP00000043641/1-1368 ARATHVTDFF TGSDSIQGTW CKDILQTIMS FTPHNWASHT LSCFPGPLQA bmy_12937T0/1-1231 ARATHVTDFF TGSDSIQGTW CKDILQTIMS FTPHNWASHT LSCFPGPL-- BACU014302/1-1063 ARATHVTDFF TGSDSIQGTW CKDILQTIMS FTPHNWASHT LSCFPGPLQA 751 800 ENSTTRP00000010778/1-1369 FFKQNNVPQE SRFNLKKNVE EEYRKWKSMT NENDIITHFS AQRSPPLFLC ENSP00000357047/1-1368 FFKQNNVPQE SRFNLKKNVE EEYRKWKSMS NENDIITHFS MQGSPPLFLC ENSBTAP00000043641/1-1368 FFKQNNVPQE SRFNLKKNVE EEYRKWKSMT NENDIITHFS AQRSPPLFLC bmy_12937T0/1-1231 ---------- ---------- ---------- ---------- -QRSPPLFLC BACU014302/1-1063 FFKQNNVPQE SRFNLKKNVE EEYRKWKSMT NENDIITHFS AQRSPPLFLC 801 850 ENSTTRP00000010778/1-1369 LLWKMLLETD HINQIGYRVL ERIGARALVV HVRTFADFLV YEFSTSAGGQ ENSP00000357047/1-1368 LLWKMLLETD HINQIGYRVL ERIGARALVA HVRTFADFLV YEFSTSAGGQ ENSBTAP00000043641/1-1368 LLWKMLLETD HINQIGYRVL ERIGARALVV HVRTFADFLV YEFSTSAGGQ bmy_12937T0/1-1231 LLWKMLLETD HINQIGYRVL ERIGARALVV HVRTFADFLV YEFSTSAGGQ BACU014302/1-1063 LLWKMLLETD HINQIGYRVL ERIGARALVV HVRTFADFLV YEFSTSAGGQ 851 900 ENSTTRP00000010778/1-1369 QLNKCIEILN DMVWKYNIVT LDRLILCLAM RSHEGNEAQV CYFIIQLLLL ENSP00000357047/1-1368 QLNKCIEILN DMVWKYNIVT LDRLILCLAM RSHEGNEAQV CYFIIQLLLL ENSBTAP00000043641/1-1368 QLNKCIEILN DMVWKYNIVT LDRLILCLAM RSHEGNEAQV CYFIIQLLLL bmy_12937T0/1-1231 QLNKCIEILN DMVWKYNIVT LDRLILCLAM RSHEGNEAQV CYFIIQLLLL BACU014302/1-1063 QLNKCIEILN DMVWKYNIVT LDRLILCLAM RSHEGNEAQV CYFIIQLLLL 901 950 ENSTTRP00000010778/1-1369 KPNDFRNRVS DFVKENSPEH WLQNDWHTKH MNYHKKYPEK LYFEGLAEQ- ENSP00000357047/1-1368 KPNDFRNRVS DFVKENSPEH WLQNDWHTKH MNYHKKYPEK LYFEGLAEQV ENSBTAP00000043641/1-1368 KPNDFRNRVS DFVKENSPEH WLQNDWHTKH MNYHKKYPEK LYFEGLAEQV bmy_12937T0/1-1231 KPNDFRNRVS DFVKENSPEH WLQNDWHTKH MNYHKKYPEK LYFEGLAEQV BACU014302/1-1063 KPNDFRNRVS DFVKENSPEH WLQNDWHTKH MNYHKKYPEK LYFEGLAEQV 951 1000 ENSTTRP00000010778/1-1369 DPPVPIQSPY LPIYF-NVCL RFLPVFDIVI HRFLELLPVS KSLETLLDHL ENSP00000357047/1-1368 DPPVQIQSPY LPIYFGNVCL RFLPVFDIVI HRFLELLPVS KSLETLLDHL ENSBTAP00000043641/1-1368 DPPVPIQSPY LPIYFGNVCL RFLPVFDIVI HRFLELLPVS KSLETLLDHL bmy_12937T0/1-1231 DPPVPIQSPY LPIYFGNVCL RFLPVFDIVI HRFLELLPVS KSLETLLDHL BACU014302/1-1063 DPPVPIQSPY LPIYFGNVCL RFLPVFDIVI HRFLELLPVS KSLETLLDHL 1001 1050 ENSTTRP00000010778/1-1369 GGLYKFHHRP VTYLYNTLHY YEMHLRNRES LKRKLVHAII GSLKDNRPQG ENSP00000357047/1-1368 GGLYKFHDRP VTYLYNTLHY YEMHLRDRAF LKRKLVHAII GSLKDNRPQG ENSBTAP00000043641/1-1368 GGLYKFHDRP VTYLYNTLHY YEMHLRNRES LKRKLVHAII GSLKDNRPQG bmy_12937T0/1-1231 GGLYKFHDRP VTYLYNTLHY YEMHLRNRES LKRKLVHAII GSLKDNRPQG BACU014302/1-1063 GGLYKFHDRP VTYLYNTLHY YEMHLRNRES LKRKLVHAII GSLKDNRPQG 1051 1100 ENSTTRP00000010778/1-1369 WCLSDTYLKC AMNAREDNPW VPDDSYYCKL IGRLVDTMAG KSPGPFPNCD ENSP00000357047/1-1368 WCLSDTYLKC AMNAREENPW VPDDTYYCRL IGRLVDTMAG KSPGPFPNCD ENSBTAP00000043641/1-1368 WCLSDTYLKN AMNAREDNPW VPDDSYYCKL IGRLVAPMAG KSPGPFPNCD bmy_12937T0/1-1231 WCLSDTYLKC AMNAREDNPW VPDDSYYCKL IGRLVD---- ---------- BACU014302/1-1063 WCLSDTYLKC AMNAREDNPW VPDDSYYCKL IGRLVD---- ---------- 1101 1150 ENSTTRP00000010778/1-1369 WRFNEFPNPA AHALHVTCVE LMALAVSGQD VGNALLNVVL KSQPLVPREN ENSP00000357047/1-1368 WRFNEFPNPA AHALHVTCVE LMALAVSGKE VGNALLNVVL KSQPLVPREN ENSBTAP00000043641/1-1368 WRFNEFPNPA AHALHVTCVE LMALAVSGQD VGNALLNVVL KSQPLVPREN bmy_12937T0/1-1231 ---------- ---------- ---------- --NILFTSAF SAKREHYSMD BACU014302/1-1063 ---------- ---------- ---------- --NILFTVIF ---------- 1151 1200 ENSTTRP00000010778/1-1369 ITAWMN--AI GLIITALPEP YWIVLHDRIV SVISSPSLTS ETEWVGYPFR ENSP00000357047/1-1368 ITAWMN--AI GLIITALPEP YWIVLHDRIV SVISSPSLTS ETEWVGYPFR ENSBTAP00000043641/1-1368 ITAWMN--AI GLIITALPEP YWIVLHDRIV SVISSPSLTS ETEWVGYPFR bmy_12937T0/1-1231 ECNWIDHHCP TSFLLVLKEP YWIVLHDRIV SVISSPSLTS ETEWVGYPFR BACU014302/1-1063 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSTTRP00000010778/1-1369 LFDFTACHQS YSEMSCSYTL ALAHAVWHHS SIGQLSLIPK FLTEVLLPIV ENSP00000357047/1-1368 LFDFTACHQS YSEMSCSYTL ALAHAVWHHS SIGQLSLIPK FLTEVLLPIV ENSBTAP00000043641/1-1368 LFDFTACHQS YSEMSCSYTL ALAHAVWHHS SIGQLSLIPK FLTEVLLPIV bmy_12937T0/1-1231 LFDFTACHQS YSEMSCSYTL ALAHAVWHHS SIGQLSLIPK FLTEVLLPIV BACU014302/1-1063 ---------- ---------- ---------- ---------- ---------- 1251 1300 ENSTTRP00000010778/1-1369 KTEFQLLYVY HLVGPFLQRF QQERTRCMIE IGVAFYDMLL NVDQCSTHLN ENSP00000357047/1-1368 KTEFQLLYVY HLVGPFLQRF QQERTRCMIE IGVAFYDMLL NVDQCSTHLN ENSBTAP00000043641/1-1368 KTEFQLLYVY HLVGPFLQRF QQERTRCMIE IGVAFYDMLL NVDQCSTHLN bmy_12937T0/1-1231 KTEFQLLYVY HLVGPFLQRF QQERTRCMIE IGVAFYDMLL NVDQCSTHLN BACU014302/1-1063 ---------- ---------- ---------- ---------- ---------- 1301 1350 ENSTTRP00000010778/1-1369 YMDPICDFLY HMKYMFTGDS VKEQVKKIIC NLKPALKLRL RFITHISKME ENSP00000357047/1-1368 YMDPICDFLY HMKYMFTGDS VKEQVEKIIC NLKPALKLRL RFITHISKME ENSBTAP00000043641/1-1368 YMDPICDFLY HMKYMFTGDS VKEQVEKIIC NLKPALKLRL RFITHISKME bmy_12937T0/1-1231 YMDPICDFLY HMKYMFTGDS VKEQVEKIIC NLKPALKLRL RFITHISKME BACU014302/1-1063 ---------- ---------- ---------- ---------- ---------- 1351 1400 ENSTTRP00000010778/1-1369 PAAVPPQAIN SGSPAPQSNQ VPVSLPVTQ ENSP00000357047/1-1368 PAAVPPQAMN SGSPAPQSNQ VPVSLPVTQ ENSBTAP00000043641/1-1368 PAAVPPQAVS SGSPAPQSTQ VPGSLPVTQ bmy_12937T0/1-1231 PAAVPPQAIN SGSPAPQSNQ VPVSLPVTQ BACU014302/1-1063 ---------- -----PDSSE ITIC-----