KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:55:03 2014 Check: 00 .. Name: ENSBTAP00000043671/1-766 Len: 1472 Check: 7891 Weight: 1.00 Name: ENSP00000235329/1-757 Len: 1472 Check: 2141 Weight: 1.00 Name: ENSTTRP00000003291/1-757 Len: 1472 Check: 2718 Weight: 1.00 Name: bmy_12769T0/1-708 Len: 1472 Check: 7748 Weight: 1.00 Name: BACU002969/1-1445 Len: 1472 Check: 4081 Weight: 1.00 // 1 50 ENSBTAP00000043671/1-766 ---------- ---------- ---------- ---------- ---------- ENSP00000235329/1-757 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003291/1-757 ---------- ---------- ---------- ---------- ---------- bmy_12769T0/1-708 ---------- ---------- ---------- ---------- ---------- BACU002969/1-1445 MRLQLLLAPL GWLLLVETKG DAKPEDNLLV LTVATKETEG FRRFKRSAQF 51 100 ENSBTAP00000043671/1-766 ---------- ---------- ---------- ---------- ---------- ENSP00000235329/1-757 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003291/1-757 ---------- ---------- ---------- ---------- ---------- bmy_12769T0/1-708 ---------- ---------- ---------- ---------- ---------- BACU002969/1-1445 FSYKIQALGL GEDWHGEKEM SAGGGLKVRL LKKALEKHAD KEDLVILFTD 101 150 ENSBTAP00000043671/1-766 ---------- ---------- ---------- ---------- ---------- ENSP00000235329/1-757 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003291/1-757 ---------- ---------- ---------- ---------- ---------- bmy_12769T0/1-708 ---------- ---------- ---------- ---------- ---------- BACU002969/1-1445 SYDVLFASGP RELLKKFRQA RSQVVFSAEE LIYPDRRLEA KYPVVSDGKR 151 200 ENSBTAP00000043671/1-766 ---------- ---------- ---------- ---------- ---------- ENSP00000235329/1-757 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003291/1-757 ---------- ---------- ---------- ---------- ---------- bmy_12769T0/1-708 ---------- ---------- ---------- ---------- ---------- BACU002969/1-1445 FLGSGGFIGY APNLSKLVAE WEGQDSDSDQ LFYTKIFLDP EKREGINITL 201 250 ENSBTAP00000043671/1-766 ---------- ---------- ---------- ---------- ---------- ENSP00000235329/1-757 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003291/1-757 ---------- ---------- ---------- ---------- ---------- bmy_12769T0/1-708 ---------- ---------- ---------- ---------- ---------- BACU002969/1-1445 DHRCRIFQNL DGALDEVVLK FEMGQVRARN LAYDTLPVLI HGNGPTKLQL 251 300 ENSBTAP00000043671/1-766 ---------- ---------- ---------- ---------- ---------- ENSP00000235329/1-757 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003291/1-757 ---------- ---------- ---------- ---------- ---------- bmy_12769T0/1-708 ---------- ---------- ---------- ---------- ---------- BACU002969/1-1445 NYLGNYIPRF WTFETGCAVC DEGLRSLKGI GDEALPMVLV GVFIEQPTPF 301 350 ENSBTAP00000043671/1-766 ---------- ---------- ---------- ---------- ---------- ENSP00000235329/1-757 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003291/1-757 ---------- ---------- ---------- ---------- ---------- bmy_12769T0/1-708 ---------- ---------- ---------- ---------- ---------- BACU002969/1-1445 LSLFFQRLLR LHYPRKRLRL FIHSHEKQHK TQVEQFLAEH GSEYQSVKLL 351 400 ENSBTAP00000043671/1-766 ---------- ---------- ---------- ---------- ---------- ENSP00000235329/1-757 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003291/1-757 ---------- ---------- ---------- ---------- ---------- bmy_12769T0/1-708 ---------- ---------- ---------- ---------- ---------- BACU002969/1-1445 GPEVRVANAD ARNMGVDLCR QDRGCTYYFS VDADVALTEP KTLQLLIEQN 401 450 ENSBTAP00000043671/1-766 ---------- ---------- ---------- ---------- ---------- ENSP00000235329/1-757 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003291/1-757 ---------- ---------- ---------- ---------- ---------- bmy_12769T0/1-708 ---------- ---------- ---------- ---------- ---------- BACU002969/1-1445 KNVIAPLMTR HGRLWSNFWG TLSADGYYAR SEDYVDIVQG RRVGVWNVPY 451 500 ENSBTAP00000043671/1-766 ---------- ---------- ---------- ---------- ---------- ENSP00000235329/1-757 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003291/1-757 ---------- ---------- ---------- ---------- ---------- bmy_12769T0/1-708 ---------- ---------- ---------- ---------- ---------- BACU002969/1-1445 ISNIYLIKGS ALRAELQEMD LFHHSKLDPD MAFCANIRQQ DVFLFLTNRH 501 550 ENSBTAP00000043671/1-766 ---------- ---------- ---------- ---------- ---------- ENSP00000235329/1-757 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003291/1-757 ---------- ---------- ---------- ---------- ---------- bmy_12769T0/1-708 ---------- ---------- ---------- ---------- ---------- BACU002969/1-1445 TFGHLLSLDS YQTTHLHNDL WEVFSNPEDW KEKYIHENYT KALAGKMVEM 551 600 ENSBTAP00000043671/1-766 ---------- ---------- ---------- ---------- ---------- ENSP00000235329/1-757 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003291/1-757 ---------- ---------- ---------- ---------- ---------- bmy_12769T0/1-708 ---------- ---------- ---------- ---------- ---------- BACU002969/1-1445 PCPDVYWFPI FTETACDELV EEMEHYGRWS LGDNRDNRIQ GGYENVPTID 601 650 ENSBTAP00000043671/1-766 ---------- ---------- ---------- ---------- ---------- ENSP00000235329/1-757 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003291/1-757 ---------- ---------- ---------- ---------- ---------- bmy_12769T0/1-708 ---------- ---------- ---------- ---------- ---------- BACU002969/1-1445 IHMNQISFER EWHKFLVEYI APMTEKLYPG YYTRAQFDLA FVVRYKPDEQ 651 700 ENSBTAP00000043671/1-766 ---------- ---------- ---------- --------MS LLFSRCNSIV ENSP00000235329/1-757 ---------- ---------- ---------- --------MS LLFSRCNSIV ENSTTRP00000003291/1-757 ---------- ---------- ---------- --------MS LLFSRCNSII bmy_12769T0/1-708 ---------- ---------- ---------- --------MS LLFSRCNSII BACU002969/1-1445 PSLMPHHDAS TFTINIALNR VGVDYEGTSS HATPIPHAMS LLFSRCNSII 701 750 ENSBTAP00000043671/1-766 TVKKDKRHMA EVNASPLKHF VTAKKKINGI FEQLGAYIQE SATFLEETYR ENSP00000235329/1-757 TVKKNKRHMA EVNASPLKHF VTAKKKINGI FEQLGAYIQE SATFLEDTYR ENSTTRP00000003291/1-757 TVKKDKRHMA EVNASPLKHF VTAKKKINGI FEQLGAYIQE SATFLEDTYR bmy_12769T0/1-708 TVKKDKRHMA EVNASPLKHF VTAKKKINGI FEQLGAYIQE SAAFLEDTYR BACU002969/1-1445 TVKKDKRHMA EVNASPLKHF VTAKKKINGI FEQLGAYIQE SAAFLEDTYR 751 800 ENSBTAP00000043671/1-766 NAELDPVTTE EQVLDVKGYL SKVRGISEVL ARRHMKVAFF GRTSNGKSTV ENSP00000235329/1-757 NAELDPVTTE EQVLDVKGYL SKVRGISEVL ARRHMKVAFF GRTSNGKSTV ENSTTRP00000003291/1-757 NAELDPVTTE EQVLDVRGYL SKVRGISEVL ARRHMKVAFF GRTSNGKSTV bmy_12769T0/1-708 NAELDPVTTE EQVLDVRGYL SKVRGISEVL ARRHMKVAFF GRTSNGKSTV BACU002969/1-1445 NAELDPVTTE EQVLDVRGYL SKVRGISEVL ARRHMKVAFF GRTSNGKSTV 801 850 ENSBTAP00000043671/1-766 INAMLWDKVH SNVSAQGSRA FIFLRASYTL GWDQMLVLVH KELINAEQHP ENSP00000235329/1-757 INAMLWDKVL P--SGIGHTT NCFLRVEGTD GHEAF----- --LLTEGSEE ENSTTRP00000003291/1-757 INAMLWDKVL P--SGIGHTT NCFLRVEGTD GHEAF----- --LLTEGSEE bmy_12769T0/1-708 INAMLWDKVL P--SGIGHTT NCFLRVEGTD GHEAF----- --LLTEGSEE BACU002969/1-1445 INAMLWDKVL P--SGIGHTT NCFLRVEGTD GHEAF----- --LLTEGSEE 851 900 ENSBTAP00000043671/1-766 RKKLNTVNQL AHALHQDEQL HAGSLVSVMW PNSKCPLLKD DLVLMDSPGI ENSP00000235329/1-757 KRSAKTVNQL AHALHQDKQL HAGSLVSVMW PNSKCPLLKD DLVLMDSPGI ENSTTRP00000003291/1-757 KRSVKTVNQL AHALHQDEQL HAGSLVSVMW PNSKCPLLKD DLVLMDSPGI bmy_12769T0/1-708 KRNVKTVNQL AHALHQDEQL HAGSLVSVMW PNSKCPLLKD DLVLMDSPGI BACU002969/1-1445 KRNVKTVNQL AHALHQDEQL HAGSLVSVMW PNSKCPLLKD DLVLMDSPGI 901 950 ENSBTAP00000043671/1-766 DVTTELDSWI DKFCLDADVF VLVANSESTL MQTEKQFFHK VSERLSRPNI ENSP00000235329/1-757 DVTTELDSWI DKFCLDADVF VLVANSESTL MQTEKHFFHK VSERLSRPNI ENSTTRP00000003291/1-757 DVTTELDSWI DKFCLDADVF VLVANSESTL MQTEKQFFHK VSERLSRPNI bmy_12769T0/1-708 DVTTELDSWI DKFCLDADVF VLVANSESTL MQTEKQFFHK VSERLSRPNI BACU002969/1-1445 DVTTELDSWI DKFCLDADVF VLVANSESTL MQTEKQFFHK VSERLSRPNI 951 1000 ENSBTAP00000043671/1-766 FILNNRWDAS ASEPEYMEEV RRQHMERCTS FLVDELGVVD RGQAGDRIFF ENSP00000235329/1-757 FILNNRWDAS ASEPEYMEEV RRQHMERCTS FLVDELGVVD RSQAGDRIFF ENSTTRP00000003291/1-757 FILNNRWDAS ASEPEYMEEV RRQHMERCTS FLVDELGVVD RGQAGDRIFF bmy_12769T0/1-708 FILNNRWDAS ASEPEYMEEV RRQHMERCTS FLVDELAVVD RGQAGDRIFF BACU002969/1-1445 FILNNRWDAS ASEPEYMEEV RRQHMERCTS FLVDELAVVD RGQAGDRIFF 1001 1050 ENSBTAP00000043671/1-766 VSAKEVLNAR IQKAQGMPEG GGALAEGFQV RMFEFQNFER RFEECISQSA ENSP00000235329/1-757 VSAKEVLNAR IQKAQGMPEG GGALAEGFQV RMFEFQNFER RFEECISQSA ENSTTRP00000003291/1-757 VSAKEVLNAR IQKAQGMPEG GGALAEGFQV RMFEFQNFER RFEECISQSA bmy_12769T0/1-708 VSAKEVLNAR IQKAQGMPEG GGALAEGFQV RMLEFQNFER RFEECISQSA BACU002969/1-1445 VSAKEVLNAR IQKAQGMPEG GGALAEGFQV RMLEFQNFER RFEECISQSA 1051 1100 ENSBTAP00000043671/1-766 VKTKFEQHTV RAKQIAEAVR LIMDSLHIAA QEQRVYCLET REERQERLRF ENSP00000235329/1-757 VKTKFEQHTV RAKQIAEAVR LIMDSLHMAA REQQVYCEEM REERQDRLKF ENSTTRP00000003291/1-757 VKTKFEQHTV RAKQIAEAVR LIMDSLHIAA QEQRVYCLEM REERQERLRF bmy_12769T0/1-708 VKTKFEQHTV RAKQIAEAVR LIMDSLHIAA QEQRVYCLEM REERQERLKF BACU002969/1-1445 VKTKFEQHTV RAKQIAEAVR LIMDSLHIAA QEQRVYCLEM REERQERLKF 1101 1150 ENSBTAP00000043671/1-766 IDKQLELLAQ DYKLRIKQIT EEVERQVSTA MAEEIRRLSV LVDEYQMDFH ENSP00000235329/1-757 IDKQLELLAQ DYKLRIKQIT EEVERQVSTA MAEEIRRLSV LVDDYQMDFH ENSTTRP00000003291/1-757 IDKQLELLAQ DYKLRIKQIT EEVERQVSTA MAEEIRRLSV LVDEYQMDFH bmy_12769T0/1-708 IDKQLELLAQ DYKLRIKQIT EEVERQVSTA MAEEIRRLSV LVDEYQMDFH BACU002969/1-1445 IDKQLELLAQ DYKLRIKQIT EEVERQVSTA MAEEIRRLSV LVDEYQMDFH 1151 1200 ENSBTAP00000043671/1-766 PSPVVLKVYK NELHRHIEEG LGRNMSDRCS TAITSSLQTM QQEMIDGLKP ENSP00000235329/1-757 PSPVVLKVYK NELHRHIEEG LGRNMSDRCS TAITNSLQTM QQDMIDGLKP ENSTTRP00000003291/1-757 PSPVVLKVYK NELHRHIEEG LGRNMSDRCS TAITSSLQTM QQEMIDGLKP bmy_12769T0/1-708 PSPVVLKVYK NELHRHIEEG LGRNMSDRCS TAITGSLQTM QQEMIDGLKP BACU002969/1-1445 PSPVVLKVYK NELHRHIEEG LGRNMSDRCS TAITSSLQTM QQEMIDGLKP 1201 1250 ENSBTAP00000043671/1-766 LLPVSVRSQM DMLVPRQCFS LSYDLNCDKL CADFQEDIEF HFSLGWTMLV ENSP00000235329/1-757 LLPVSVRSQI DMLVPRQCFS LNYDLNCDKL CADFQEDIEF HFSLGWTMLV ENSTTRP00000003291/1-757 LLPVSMRSQI DLLVPRQCFS LSYDLNCDKL CADFQEDIEF HFSLGWTMLV bmy_12769T0/1-708 LLPVSMRSQI DLLVPRQCFS LSYDLNCDKL CADFQEDIEF HFSLGWTMLV BACU002969/1-1445 LLPVSMRSQI DLLVPRQCFS LSYDLNCDKL CADFQEDIEF HFSLGWTMLV 1251 1300 ENSBTAP00000043671/1-766 NRFLGPKNSR RALMGYSDQV QRPMPLTPAN PSMPPLPQGS LTQEELMVSM ENSP00000235329/1-757 NRFLGPKNSR RALMGYNDQV QRPIPLTPAN PSMPPLPQGS LTQEEFMVSM ENSTTRP00000003291/1-757 NRFLGPKNSR RALMGYNEQV QRPMPLTPAN PSMPPLPQGS LTQEELMVSM bmy_12769T0/1-708 NRFLGPKNSR RALMGYNDQV QRPMPLTPAN PSMPPLPQGS LTQEELMVSM BACU002969/1-1445 NRFLGPKNSR RALMGYNDQV QRPMPLTPAN PSMPPLPQGS LTQEELMVSM 1301 1350 ENSBTAP00000043671/1-766 VTGLASLTSR TSMGILVVGG V--------- ---------V WKAVGWRLIA ENSP00000235329/1-757 VTGLASLTSR TSMGILVVGG V--------- ---------V WKAVGWRLIA ENSTTRP00000003291/1-757 VTGLASLTSR TSMGILVVGG V--------- ---------V WKAVGWRLIA bmy_12769T0/1-708 VTGLASLTSR TSMGILVVGG VMGGGMAEGL CQLTTVPLQV WKAVGWRLIA BACU002969/1-1445 VTGLASLTSR TSMGILVVGG V--------- ---------V WKAVGWRLIA 1351 1400 ENSBTAP00000043671/1-766 LSLGLYGLLY VYERLTWTTK AKERAFKRQF VEYASEKLQL IISYTGSNCS ENSP00000235329/1-757 LSFGLYGLLY VYERLTWTTK AKERAFKRQF VEHASEKLQL VISYTGSNCS ENSTTRP00000003291/1-757 LSLGLYGLLY VYERLTWTAK AKERAFKRQF VEYASEKLQL IISYTGSNCS bmy_12769T0/1-708 LSLGLYGLLY VYERLTWTAK AKERAFKRQF VEYASEKLQL IISYTGSNCS BACU002969/1-1445 LSLGLYGLLY VYERLTWTAK AKERAFKRQF VEYASEKLQL IISYTGSNCS 1401 1450 ENSBTAP00000043671/1-766 HQVQQELSGT FAHLCQQVDV TRENLEQEIA AMNKKIEVLD SLQSKAKLLR ENSP00000235329/1-757 HQVQQELSGT FAHLCQQVDV TRENLEQEIA AMNKKIEVLD SLQSKAKLLR ENSTTRP00000003291/1-757 HQVQQELSGT FAHLCQQVDV TRENLEQEIA AMNKKIEVLD SLQSKAKLLR bmy_12769T0/1-708 HQVQQ----- ---------- ---------- ---------- ---------- BACU002969/1-1445 HQVQQELSGT FAHLCQQVDV TRENLEQEIA AMNKKIEVLD SLQSKAKLLR 1451 1500 ENSBTAP00000043671/1-766 NKAGWLDSEL NMFTHQYLQP SR ENSP00000235329/1-757 NKAGWLDSEL NMFTHQYLQP SR ENSTTRP00000003291/1-757 NKAGWLDSEL NMFTHQYLQP SR bmy_12769T0/1-708 ---------- ---------- -- BACU002969/1-1445 NKAGWLDSEL NMFTHQYLQP SR