KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:55:04 2014 Check: 00 .. Name: ENSP00000265748/1-1124 Len: 1267 Check: 5278 Weight: 1.00 Name: ENSBTAP00000043678/1-1130 Len: 1267 Check: 5435 Weight: 1.00 Name: ENSTTRP00000002534/1-1117 Len: 1267 Check: 1293 Weight: 1.00 Name: bmy_16379T0/1-960 Len: 1267 Check: 903 Weight: 1.00 Name: BACU016451/1-1249 Len: 1267 Check: 8897 Weight: 1.00 // 1 50 ENSP00000265748/1-1124 MDPFTEKLLE RTRARRENLQ RKMAERPTAA PRSMTHAKRA RQPLSEASNQ ENSBTAP00000043678/1-1130 LQSYRNKLLE RTRARRENLQ RKMAERPIPA ARSLTHAKRI REPLSEASNQ ENSTTRP00000002534/1-1117 MDPFTEKLLE RTRARRENLQ RKMAERPTPA ARSATHAKRV REPLSEASNQ bmy_16379T0/1-960 ---------- ---------- --MAERPTPA ARSATQAKRV REPLSEASNQ BACU016451/1-1249 MDPFTEKLLE RTRARRENLQ RKMAERPTPA ARSATQAKRV REPLSEASNQ 51 100 ENSP00000265748/1-1124 QPLSGGEEKS CTKPSPSKKR CSDNTEVEVS NLENKQPVES TSAKSCSPSP ENSBTAP00000043678/1-1130 QPLSDGEEKS CTKPSPSKKR CSDNTEVEVS DVENEKPVES TSAKLCSPRP ENSTTRP00000002534/1-1117 QPLSGGEEKS CTKPSPSKKR CSD-TEVEVS NLKMKNRVES ASA-PCSPSP bmy_16379T0/1-960 QPLSGGEEKS CTKPSPSKKR CSDNTEVEVS NLENEKPVES ASAKPCSPSP BACU016451/1-1249 QPLSGGEEKS CTKPSPSKKR CSDNTEVEVS NLENEKPVES ASVKPCSPSP 101 150 ENSP00000265748/1-1124 VSPQVQPQA- --ADTISDSV AVPAS--LLG MRRGLNSRLE ATAASSVKTR ENSBTAP00000043678/1-1130 VSPQAQPQMS QAPAGVSDSL AAPASAPLLG VRSGPNSRLG AAAASSVRTR ENSTTRP00000002534/1-1117 MSLHKRPQT- --PAGVSDSV AAPAS--LLG VRRGLNSRLE GTAASSVKTR bmy_16379T0/1-960 MSPQAQPQAP QVPAGVSDSV AAPAS--LLG VRRGLNSRLE GTAASSVKTR BACU016451/1-1249 MSPQAQPQAP QVPAGVSDSV ATPAS--LLG VRRGLNSRLE GTAASSVKTR 151 200 ENSP00000265748/1-1124 MQKLAEQRRR WDNDDMTDDI PESSLFSPMP SEEKAASPPR PLLSNASATP ENSBTAP00000043678/1-1130 MQKLAEQRRC WDSDDVTDDI PESSPISAMP SEEKAASPPK PSLSDASATP ENSTTRP00000002534/1-1117 MQKLAEQRRH WDSGDVTDDI HESSPFSAMP SE--ATSPPK PSLSDASATP bmy_16379T0/1-960 MQKLAEQRRH WDNDDVTDDL HESSPISAMP SE--ATSPPK PSLSDASATP BACU016451/1-1249 MQKLAEQRRH WDNDDVTDDI HESSPISAMP SE--ATSPPK PSLSDASAAP 201 250 ENSP00000265748/1-1124 VGRRGRLANL AATICSWEDD VNHSFAKQNS VQEQPGTACL SKFSSASGAS ENSBTAP00000043678/1-1130 VGRRGRLANL AATICSWEDD VKTSSAKQNS VQEQPGTTCL SKFSSASGAS ENSTTRP00000002534/1-1117 VGRKGRLANL AATICSWEDD VKNSSAKQNS VQEQPGTTCL SKFSSASGAS bmy_16379T0/1-960 VGRKGRLANL AATICSWEDD VKNSSAKQNS VQEQPGTTCL SKFSSASGAS BACU016451/1-1249 VGRKGRLANL AATICSWEDD VKNSSAKQNS VQEQPGTTCL SKFSSASGAS 251 300 ENSP00000265748/1-1124 ARINSSSVKQ EATFCSQRDG DASLNKALSS SADDASLVNA SISSSVKAT- ENSBTAP00000043678/1-1130 ARINSSSVKQ EATCCSQRDG DASLNKASSS SAVGASLINV AISSPGKATS ENSTTRP00000002534/1-1117 ARINSSSVKQ EATCCSQRDG DASLNKASSS SAVGASLINV AISSSGKATS bmy_16379T0/1-960 ARINSSSVKQ EATCCSQRDG DASLNKASSS SAVGASLINV AISSSGKATS BACU016451/1-1249 ARINSSSVKQ EATCCSQRDG DASLNKASSS SAVGASLINV AISSSGKATS 301 350 ENSP00000265748/1-1124 SPVK-STTSI TDAKSCEGQN PELLPKTPIS PLKTGVSKPI VKSTLSQTVP ENSBTAP00000043678/1-1130 SPVKSSTTSI TSAKNCKVQN PELLQKTSVS PLKTEVSKPV EKSAVSCTVR ENSTTRP00000002534/1-1117 SPVKSSTTSI TSAKNCEVQN PELLQKTSVS PLKTEVSKST ERSPVSRTVR bmy_16379T0/1-960 SPVKSSTTSI TSAKNCEVQN PELLQKTSVS PLKT-VSKST ERSTVSRTVR BACU016451/1-1249 SPVKSSTTSI TSAKNCEVQN PELLQKTSVS PLKTEVSKST ERSTVSRTVR 351 400 ENSP00000265748/1-1124 SKGELSREIC LQSQSKDKST TPGGTGIKPF LERFGERCQE HSKESPARST ENSBTAP00000043678/1-1130 PKEELNREIC LRSQPKDKSA TPGGSGIKPF LERFGERCQE HSKESPARST ENSTTRP00000002534/1-1117 PKEELNREIC LQSQPKNKST TPGGAGIKPF LERFGERCQE HSKESPARST bmy_16379T0/1-960 PKEELNREIC LQSQPKDKST TPGGAGIKPF LERFGERCQE HSKESPARST BACU016451/1-1249 PKEELNREIC LQSQPKDKST TPGGAGIKPF LERFGERCQE HSKESPARST 401 450 ENSP00000265748/1-1124 PHRTPIITPN TKAIQERLFK QDTSSSTTHL AQQLKQERQK ELACLRGRFD ENSBTAP00000043678/1-1130 PHRTPIITPN TKAIQERLFR QNASSSTTHL AQQLKQERQK ELACLRSRFD ENSTTRP00000002534/1-1117 PHRTPIITPN TKAIQERLFK QNASSSTTHL AQQLKQERQK ELACLRGRFD bmy_16379T0/1-960 PHRTPIITPN TKAIQERLFK QNASLSTTHL AQQLKQERQK ELACLRGRFD BACU016451/1-1249 PHRTPIITPN TKAIQERLFK QNASSSTTHL AQQLKQERQK ELACLRGRFD 451 500 ENSP00000265748/1-1124 KGNIWSAEKG GNSKSKQLET KQETHCQSTP LKKHQGVSKT QSLPVTEKVT ENSBTAP00000043678/1-1130 KGSLWSAEKG ENSKSKQLET KQEIHCQSTP LKKQVD-PST PSLTVTEKVT ENSTTRP00000002534/1-1117 KGSLWSAEKG ENSRSKQLET KQEIHCQNTP LRKQVG-PNT PSLPVTEKVT bmy_16379T0/1-960 KGSLWSAEKG ENSRSKQLET KQEIHCQNTP LRKQVG-PNT PSLPVTEKVA BACU016451/1-1249 KGSLWSAEKG ENSRSKQLET KQEIHCQNTP LRKQVC-PNT PSLPVTEKVA 501 550 ENSP00000265748/1-1124 ENQIPAKNSS TEPKGFTECE MTKSSPLKIT LFLEEDKSLK VTSDPKVEQK ENSBTAP00000043678/1-1130 ENQTPANPSS RETSDFIECE MTKSSPLKIT LFLEEDKSLK VTSEPKVEQQ ENSTTRP00000002534/1-1117 ENQTPAQPSS IEPTGFTECE MTKSSPLKIT LFLEEEKSLK VTSDPKVEQL bmy_16379T0/1-960 ENQTPAKPSS IEPTGFTECE MTKSSPLKIT LFLEEEKSLK VTSDPKVEQL BACU016451/1-1249 ENQTPAKPSS IEPTGFTGSE MTKSSPLKIT LFLEEEKSLK VTSDPKVEQL 551 600 ENSP00000265748/1-1124 IEVIREIEMS V-DDDDINSS KVINDLFSDV LEEGELDMEK SQEEMDQALA ENSBTAP00000043678/1-1130 TEVVREIEMS VDDDDDINSS KVINDIFSDV LEEGGLDVEK NQEELDQADA ENSTTRP00000002534/1-1117 TEVVREIEMS V--DDDINSS KVINDIFSDV LEEGELDVEK SQEEMDNADA bmy_16379T0/1-960 TEVVREIEMS VDDDDDINSS KVINDIFSDV LEEGELDVEK SQEEMDHADA BACU016451/1-1249 TEVVREIEMS VDDDDDINSS KVINDIFSDV LEEGELDVEK SQEEMHHADA 601 650 ENSP00000265748/1-1124 ESSEEQEDAL NISSMSLLAP LAQTVGVVSP ESLVSTPRLE LKDTSRSDES ENSBTAP00000043678/1-1130 ESSEEQEDAL NISSMSLLTP LAQTVGVVSP ESLVSSPRWE VKDTSISDES ENSTTRP00000002534/1-1117 ESS-EQEDAL NISSMSLLAP LAQTVGVVSP ENLVSSPSWE LKDTSISDES bmy_16379T0/1-960 ESSEEQEDAL NISSMSLLAP LAQTVGVVSP ENLVSSPRWE LKDTSISDES BACU016451/1-1249 ESSEEQEDAL NISSMSLLAP LAQTVGV--- -NLVSSPRWE LKDTSISDES 651 700 ENSP00000265748/1-1124 PKPGKFQRTR VPRAESGDSL GSEDRDLLYS IDAYRSQRFK ETERPSIKQV ENSBTAP00000043678/1-1130 PKPGKFQRTR VPRAESGDSI GSEDHDLPYS IDAYRSQRVK ETDRPSIKQV ENSTTRP00000002534/1-1117 PKPGKFQRTR VPRAESGDSI GHEGHDLPYS IDAYRSQRVK ETDRPSIKQV bmy_16379T0/1-960 PKPGKFQRTR VPRAESGDSM GSEDHDLPYS IDAYRSQRVK ETDRPSIKQV BACU016451/1-1249 PKPGKFQRTR VPRAESGDSM GSEDHDLP-- ---YRSQRVK ETDRPSIKQV 701 750 ENSP00000265748/1-1124 IVRKEDVTSK LDEKNNAFPC QVNIKQKMQE LNNEINMQQT VIYQASQALN ENSBTAP00000043678/1-1130 IVRKEDVTSK LEEKKNGFPC QVNIKQKMQE LNNEINLQQT VIYQASQALN ENSTTRP00000002534/1-1117 IVRKEDVTSK LNEKKNGFPC QVNIKQKMQE LNNEINLQQT VIYQASQALN bmy_16379T0/1-960 IVRKEDVTSK LNEKKNGFPC --------QE LNNEINLQQT VIYQASQALN BACU016451/1-1249 IVRKEDVTSK LNEKKNGFPC QVNIKQKMQE LNNEINLQQT VIYQASQALN 751 800 ENSP00000265748/1-1124 CCVDEEHGKG SLEEAEAERL LLIATGKRTL LIDELNKLKN EGPQRKNKAS ENSBTAP00000043678/1-1130 CCVDEEHGKG SLEEAEAERL LLIATEKRTL LIDELNKLKN EGPQRKNKAG ENSTTRP00000002534/1-1117 CCVDEDHGKG SLEEAEAERL LLIATEKRTL LIDELNKLKN EGPQRKNNAG bmy_16379T0/1-960 CCVDEEHGKG SLEEAEAERL LLIATEKRTL LIDELNKLKN EGPQRKNKAG BACU016451/1-1249 CCVDEEHGKG SLEEAEAERL LLIATEKRTL LIDGLNKLKN EGPQRKNKAG 801 850 ENSP00000265748/1-1124 P--QSEFMPS KGSVTLSEIR LPLKADFVCS TVQKPDAANY YYLIILKAGA ENSBTAP00000043678/1-1130 PISQSEFVPS RGSITLSEIR LPLKADFVCS TAQKPDAANY YFLIILKAGA ENSTTRP00000002534/1-1117 PISQSEFVPS KGSITLSEIR LPLKADFVCS TVQKPDAANY YFLIILKA-A bmy_16379T0/1-960 PISQSEFVPS KGSITLSEIR LPLKADFVCS TVQKPDAANY YFLIILKAGA BACU016451/1-1249 PISQSEFVPS KGSITLSEIR LPLKADFVCS TVQKPDAANY YFLIILKAGA 851 900 ENSP00000265748/1-1124 ENMVATPLAS TSNSLNGDAL TFTTTFTLQD VSNDFEINIE VYSLVQKKDP ENSBTAP00000043678/1-1130 ENMVATPLAS TSTSLNGDAL TFTTTFTLQD VSNDFEINIE VYSLVQRKDP ENSTTRP00000002534/1-1117 ENMVATPLAS TSNSLNGDA- TFTTTFTLRD VSNDFEINIE VYSLVQTKDP bmy_16379T0/1-960 ENMVATPLAS TSNSLNGDAL TFTTTFTLRD VSNDFEINIE VYSLVQKKDP BACU016451/1-1249 ENMVATPLAS TSNSLNGDAL TFTTTFTLRD VSNDFEINIE VYSLVQKKDP 901 950 ENSP00000265748/1-1124 SGLDKKKKTS KSKAITPKRL LTSITTKSNI HSSVMASPGG LSAVRTSNFA ENSBTAP00000043678/1-1130 SGPDKKKKAY KSKAITPKRL LTSVTTKSTL HSSVMAS--- LNAVRTSNFA ENSTTRP00000002534/1-1117 SGPDKKKKAY KSKAITPKRL LTSVTTKSTL PSSVMAS--- LNAVRTSNFA bmy_16379T0/1-960 SGPDKKKKAY KSKAITPKRL LTSVTTKSTL HSSVMAS--- LNAVRTSNFA BACU016451/1-1249 SGPDKKKKAY KSKAITPKRL LTSVTTKSTL HSSVMAS--- LNAVRSSNFA 951 1000 ENSP00000265748/1-1124 LVGSYTLSLS SVGNTKFVLD KVPFLSSLEG HIYLKIKCQV -NSSVEERGF ENSBTAP00000043678/1-1130 LVGSYTLSLS SVGNTKFALD RVPFLSPLEG HIYLKIKCQV -NSSVEERGF ENSTTRP00000002534/1-1117 LVGSYMLSLS SVGNTKFALD KVPFLSPLEG HIYLKIKCQV XXXXXXXXXX bmy_16379T0/1-960 LVGSYTLSLS SVGNTKFALD KVI------- QIYL------ ---------- BACU016451/1-1249 LVGSYTLSLS SVGNTKFALD KVPFLCPLEG HIYLKIKCQV -NSSVEERGF 1001 1050 ENSP00000265748/1-1124 LTIFEDVSGF GAWHRRWCVL SGNCISYWTY PDDEKRKNPI GRINLANCTS ENSBTAP00000043678/1-1130 LTIFEDVSGF GAWHRRWCVL SGNCISYWTY PDDEKRKNPI GRLNLANCTS ENSTTRP00000002534/1-1117 XTIFEDVSGF GAWHRRWCVL SGNCISYWTY PDDEKRKNPI GRLNLANCTS bmy_16379T0/1-960 ---------- ---------- ---------- ---------- ---------- BACU016451/1-1249 LTIFEDVSGF GAWHRRWCVL SGNCISYWTY PDDEKRKNPI GRLNLANCTS 1051 1100 ENSP00000265748/1-1124 RQIEPANREF CARRNTFELI TVRPQREDDR ETLVSQCRDT LCVTK----- ENSBTAP00000043678/1-1130 RQIEPVNREF CARRNTLELI TVRPQREDDR ETLVSQCRDT LCVTK----- ENSTTRP00000002534/1-1117 RQIEPANREF CARRNTFELI TVRPQREDDR ETLVSQCRDT LCVTK----- bmy_16379T0/1-960 ---------F IYRR------ ---------- ---------- ---------- BACU016451/1-1249 RQIEPANREF CARRNTFELI TVRPQREDDR ETLVSQCRDT LCVTNMGKIE 1101 1150 ENSP00000265748/1-1124 ---------- ------NWLS ADTKEERDL- WMQKLNQV-- -LVDIRL--- ENSBTAP00000043678/1-1130 ---------- ------NWLS ADTKEERDL- WMQKLNQV-- -LVDIRL--- ENSTTRP00000002534/1-1117 ---------- ------NWLS ADTKEERDL- WMQKLNQV-- -LVDIRL--- bmy_16379T0/1-960 ---------- ---------- -----IRSM- KMSQYFQV-- ---------- BACU016451/1-1249 VIEIMTDRGS GKKRGFAFVT FDDHDSVDKI VIQKYHTVNG HNCEVRKALS 1151 1200 ENSP00000265748/1-1124 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000043678/1-1130 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002534/1-1117 ---------- ---------- ---------- ---------- ---------- bmy_16379T0/1-960 ---------- ---------- ---------- ---------- ---------- BACU016451/1-1249 KREMAGASSS QRGPSGSGNF GGGRGGGFGG NDNFGRGGNF SGRDAFGGSR 1201 1250 ENSP00000265748/1-1124 ---------- ----WQPDAC -------YKP IGKP------ ---------- ENSBTAP00000043678/1-1130 ---------- ----WQPDAC -------YKP IGKP------ ---------- ENSTTRP00000002534/1-1117 ---------- ----WQPDAC -------YKP IGKP------ ---------- bmy_16379T0/1-960 ---------- ---------- -------FEI FG-------- ---------- BACU016451/1-1249 GGGGYGGSGD GYNGFGSDGS NFGGGGSYND FGNYNNQSAN FGPVKGGDFG 1251 1300 ENSP00000265748/1-1124 ---------- ------- ENSBTAP00000043678/1-1130 ---------- ------- ENSTTRP00000002534/1-1117 ---------- ------- bmy_16379T0/1-960 ---------- ------- BACU016451/1-1249 GRSSRLCGGR GQYFAKL