KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:55:18 2014 Check: 00 .. Name: ENSTTRP00000001850/1-1080 Len: 1129 Check: 6642 Weight: 1.00 Name: ENSP00000371341/1-1086 Len: 1129 Check: 3265 Weight: 1.00 Name: ENSBTAP00000043771/1-1039 Len: 1129 Check: 8407 Weight: 1.00 Name: bmy_02319T0/1-1071 Len: 1129 Check: 8425 Weight: 1.00 Name: BACU003817/1-1052 Len: 1129 Check: 5393 Weight: 1.00 // 1 50 ENSTTRP00000001850/1-1080 MLEARPLGTQ GSDAAGALEG RGLRALLPSR ALARSL-GSK GERFAYLRLT ENSP00000371341/1-1086 MLEARPPRTQ GSDAAGAAAG RGLRALLLSL TAAAGIWGSM GERSAYQRLA ENSBTAP00000043771/1-1039 ---------- ---------- ---------- ---------- ---------- bmy_02319T0/1-1071 ---------- ------MPAA RRFPGLELSF PLLARL---- -RRRLY---- BACU003817/1-1052 ---------- ------MPAA RRFPGLELSF PLLARL---- -RRRLY---- 51 100 ENSTTRP00000001850/1-1080 GAEEGQQRLG SSSMQPEEGT GWLLELLSEV QLQQYFLRLR DDLNVTRLSH ENSP00000371341/1-1086 GGEEGPQRLG GGRMQPEEGT GWLLELLSEV QLQQYFLRLR DDLNVTRLSH ENSBTAP00000043771/1-1039 ---------- ---MQPEEGT GWLLELLSEV QLQQYFLRLR DDLNVTRLSH bmy_02319T0/1-1071 ------TRLG SSSMQPEEGT GWLLELLSEV QLQQYFLRLR DDLNVTRLSH BACU003817/1-1052 ------TRLG SSSMQPEEGT GWLLELLSEV QLQQYFLRLR DDLNVTRLSH 101 150 ENSTTRP00000001850/1-1080 FEYVKNEDLE KIGMGRPGQR RLWEAVKRRK AMCKRKSWMS K--------- ENSP00000371341/1-1086 FEYVKNEDLE KIGMGRPGQR RLWEAVKRRK ALCKRKSWMS K--------- ENSBTAP00000043771/1-1039 FEYVKNEDLE KIGMGRPGQR RLWEAVKRRK AMCKRKSWMS K--------- bmy_02319T0/1-1071 FEYVKNEDLE KIGMGRPGQR RLWEAVKRRK AVCKRKSWMS K--------- BACU003817/1-1052 FEYVKNEDLE KIGMGRPGQR RLWEAVKRRK AVCKRKSWMS KGSIWPLAAF 151 200 ENSTTRP00000001850/1-1080 --XXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000371341/1-1086 --VFSGKRLE AEFPPHHSQS TFRKTSPAPG GPAGEGPLQS LTCLIGEKDL ENSBTAP00000043771/1-1039 --VFSGKRLE AEFPPHHSQS TFRKTSPTPG GSAGEGSLQS LTCLIGEKDL bmy_02319T0/1-1071 --VFSGKRLE AEFPPHHSQS TFRKTSPTPG GPAVEGSLQS LTCLIGEKDL BACU003817/1-1052 KQVFSGKRLE AEFPPHHSQS TFRKTSPTPG GPAVEGSLQS LTCLIGEKDL 201 250 ENSTTRP00000001850/1-1080 XXXEKLGDS- FGVVRR-EWD -PSGKTVSVA VKCLKPDVLS QPEAMDDFIR ENSP00000371341/1-1086 RLLEKLGDGS FGVVRRGEWD APSGKTVSVA VKCLKPDVLS QPEAMDDFIR ENSBTAP00000043771/1-1039 HLFEKLGDGS FGVVRRGEWD APSGKTVSVA VKCLKPDVLS QPEAMDDFIR bmy_02319T0/1-1071 HLFEKLGDGS FGVVRRGEWD APSGKTVSVA VKCLKPDVLS QPEAMDDFIR BACU003817/1-1052 HLFEKLGDGS FGVVRRGEWD APSGKTVSVA VKCLKPDVLS QPEAMDDFIR 251 300 ENSTTRP00000001850/1-1080 EVNAMHSLDH -NLIRLYGVV LTPPMKMVTE LAPLGSLLDR LRKHQGHFLL ENSP00000371341/1-1086 EVNAMHSLDH RNLIRLYGVV LTPPMKMVTE LAPLGSLLDR LRKHQGHFLL ENSBTAP00000043771/1-1039 EVNAMHSLDH RNLIRLYGVV LTPPMKMVTE LAPLGSLLDR LRKHQGHFLL bmy_02319T0/1-1071 EVNAMHSLDH RNLIRLYGVV LTPPMKMVTE LAPLGSLLDR LRKHQGHFLL BACU003817/1-1052 EVNAMHSLDH RNLIRLYGVV LTPPMKMVTE LAPLGSLLDR LRKHQGHFLL 301 350 ENSTTRP00000001850/1-1080 GTLSRYAVQV AEGMGYLESK RFIHRDLAAR NLLLATRDLV KIGDFGLMRA ENSP00000371341/1-1086 GTLSRYAVQV AEGMGYLESK RFIHRDLAAR NLLLATRDLV KIGDFGLMRA ENSBTAP00000043771/1-1039 GTLSRYAVQV AEGMGYLEAK RFIHRDLAAR NLLLATRDLV KIGDFGLMRA bmy_02319T0/1-1071 GTLSRYAVQV AEGMGYLESK RFIHRDLAAR NLLLATRDLV KIGDFGLMRA BACU003817/1-1052 GTLSRYAVQV AEGMGYLESK RFIHRDLAAR NLLLATRDLV KIGDFGLMRA 351 400 ENSTTRP00000001850/1-1080 LPQNDDHYVM QEHRKVPFAW CAPESLKTRT FSHASDTWMF GVTLWEMFTY ENSP00000371341/1-1086 LPQNDDHYVM QEHRKVPFAW CAPESLKTRT FSHASDTWMF GVTLWEMFTY ENSBTAP00000043771/1-1039 LPQNDDHYVM QEHRKVPFAW CAPESLKTRT FSHASDTWMF GVTLWEMFTY bmy_02319T0/1-1071 LPQNDDHYVM QEHRKVPFAW CAPESLKTRT FSHASDTWMF GVTLWEMFTY BACU003817/1-1052 LPQNDDHYVM QEHRKVPFAW CAPESLKTRT FSHASDTWMF GVTLWEMFTY 401 450 ENSTTRP00000001850/1-1080 GQEPWIGLNG SQILHKIDKE GERLPRPEDC PQDIYNVMVQ CWAHKPEDRP ENSP00000371341/1-1086 GQEPWIGLNG SQILHKIDKE GERLPRPEDC PQDIYNVMVQ CWAHKPEDRP ENSBTAP00000043771/1-1039 GQEPWIGLNG SQILHKIDKE GERLPRPEDC PQDIYNVMVQ CWAHKPEDRP bmy_02319T0/1-1071 GQEPWIGLNG SQILHKIDKE GERLPRPEDC PQDIYNVMVQ CWAHKPEDRP BACU003817/1-1052 GQEPWIGLNG SQILHKIDKE GERLPRPEDC PQDIYNVMVQ CWAHKPEDRP 451 500 ENSTTRP00000001850/1-1080 TFVALRDFLL EAQPTDMRAL QDFEEPDKLH IQMNDVITVI EGRAENYWWR ENSP00000371341/1-1086 TFVALRDFLL EAQPTDMRAL QDFEEPDKLH IQMNDVITVI EGRAENYWWR ENSBTAP00000043771/1-1039 TFVALRDFLL EAQPTDMRAL QDFEEPDKLH IQMNDVITVI EGRAENYWWR bmy_02319T0/1-1071 TFVALRDFLL EAQPTDMRAL QDFEEPDKLH IQMNDVITVI EGRAENYWWR BACU003817/1-1052 TFVALRDFLL EAQPTDMRAL QDFEEPDKLH IQMNDVITVI EGRAENYWWR 501 550 ENSTTRP00000001850/1-1080 GQNTRTLCVG PFPRNVVTSV AGLSAQDISQ PLQNSFIHTG HGDSDPRHCW ENSP00000371341/1-1086 GQNTRTLCVG PFPRNVVTSV AGLSAQDISQ PLQNSFIHTG HGDSDPRHCW ENSBTAP00000043771/1-1039 GQNTRTLCVG PFPRNVVTSV AGLSAQDISQ PLQNSFIHTG HGDSDPRHCW bmy_02319T0/1-1071 GQNTRTLCVG PFPRNVVTSV AGLSAQDISQ PLQNSFIHTG HGDSDPRHCW BACU003817/1-1052 GQNTRTLCVG PFPRNVVTSV AGLSAQDISQ PLQNSFIHTG HGDSDPRHCW 551 600 ENSTTRP00000001850/1-1080 GFPDRIDELY LGNPMDPPDL LSVELSTSRP TQHLGRVKRE PPPRPPQPAI ENSP00000371341/1-1086 GFPDRIDELY LGNPMDPPDL LSVELSTSRP PQHLGGVKRE PPPRPPQPAF ENSBTAP00000043771/1-1039 GFPDKIDELY LGNPMDPPDL LSVELSTSRP TQHLGRVK-- ---------- bmy_02319T0/1-1071 GFPDRIDELY LGNPMDPPDL LSVELSTSRP TQHLGRVK-- ---------- BACU003817/1-1052 GFPDRIDELY LGNPMDPPDL LSVELSTSRP TQHLGRVK-- ---------- 601 650 ENSTTRP00000001850/1-1080 FTQKPTYDPV SEDQDPLSSD FKRLGLRKPG LPRGLWLAKP SARVPGTKAG ENSP00000371341/1-1086 FTQKPTYDPV SEDQDPLSSD FKRLGLRKPG LPRGLWLAKP SARVPGTKAS ENSBTAP00000043771/1-1039 ---KPTYDPV SEDQDPLSSD FKRLGLRKPG LPRGLWLAKP SARVPGTKAG bmy_02319T0/1-1071 ---KPTYDPV SEDQDPLSSD FKRLGLRKPG LPRGLWLAKP SARVPGTKAG BACU003817/1-1052 ---KPTYDPV SEDQDPLSSD FKRLGLRKPG LPRGLWLAKP SARVPGTKAG 651 700 ENSTTRP00000001850/1-1080 RGSS-EVTLI DFGEEPVVPA PRPCAPSLAQ LAMDACSLLD KTPPQSPSRA ENSP00000371341/1-1086 RGSGAEVTLI DFGEEPVVPA LRPCAPSLAQ LAMDACSLLD ETPPQSPTRA ENSBTAP00000043771/1-1039 RGGG-EVTLI DFGEEPVVPA PRPCAPSLAQ LAMDACSLLD KTPPQSPTRA bmy_02319T0/1-1071 RGSS-EITLI DFGEEPVVPA PRPCAPSLAQ LAMDACSLLD KTPPQSPSRA BACU003817/1-1052 RGSS-EVTLI DFGEEP---- ---------- ---------- -----SPSRA 701 750 ENSTTRP00000001850/1-1080 LPRPLHPTPV VDWDARPLPP PPAYDDVAQD EDDFEVCSIN STLVSAGLSA ENSP00000371341/1-1086 LPRPLHPTPV VDWDARPLPP PPAYDDVAQD EDDFEICSIN STLVGAGVPA ENSBTAP00000043771/1-1039 LPRPLHPTPV VDWDARPLPP PPAYDDVAQD EDDFEVCSIN STLVGAGVSA bmy_02319T0/1-1071 LPRPLHPTPV VDWDARPLPP PPAYDDVAQD EDDFEVCSIN STLVSAEVSA BACU003817/1-1052 LPRPLHPTPV VDWDARPLPP PPAYDDVAQD EDDFEVCSIN STLVSAGVSA 751 800 ENSTTRP00000001850/1-1080 GPSQGETNYA FVPEPARLFP ALEDNLFLPP QGGGKPPNSA QTAEIFQALQ ENSP00000371341/1-1086 GPSQGQTNYA FVPEQARPPP PLEDNLFLPP QGGGKPPSSA QTAEIFQALQ ENSBTAP00000043771/1-1039 EPSQGETNYA FVPEPARLLP PLEDNLFLPP QSGGKPPNSA QTAEIFQALQ bmy_02319T0/1-1071 GPSQGETNYA FVPEPARLFP PLEDNLFLPP QGGGKPPNSA QTAEIFQALQ BACU003817/1-1052 GPSQGETNYA FVPEPARLFP PLEDNLFLPP QGGGKPPNSA QTAEIFQALQ 801 850 ENSTTRP00000001850/1-1080 QECMRQLQVP AGALVPSPSP VGDDKPQVPP RVPIPPRPTR PRGELSPAPS ENSP00000371341/1-1086 QECMRQLQAP AGSPAPSPSP GGDDKPQVPP RVPIPPRPTR PHVQLSPAPP ENSBTAP00000043771/1-1039 QECMRQLQVP PGSLVPSPSP GGDDKPQVPP RVPIPPRPTR SRGELSPVPP bmy_02319T0/1-1071 QECMRQLQVP AGSLVPSPSP VGDDKPQVPP RVPIPPRPTR PRGELSPAPS BACU003817/1-1052 QECMRQLQVP ARSLVPSPSP VGDDKPQVPP RVPIPPRPTR PRGELSPAPS 851 900 ENSTTRP00000001850/1-1080 GEEETGRWPG PASPPRVPPR EPLSPQGSRT PSPLVPRGSS PLPPRLSSSP ENSP00000371341/1-1086 GEEETSQWPG PASPPRVPPR EPLSPQGSRT PSPLVPPGSS PLPPRLSSSP ENSBTAP00000043771/1-1039 GEEEMGRWPG PASPPRVPPR EPLSPQGSRT PSPLVPPGSS PLPPRLSSSP bmy_02319T0/1-1071 GEEEMGRWPG PASPPRVPPR EPLSPQGSRT PSPLVPRGSS PLPPRLSSSP BACU003817/1-1052 GEEEMGQWPG PASPPRVPPR EPLSPQGSRT PSPLVPRGSS PLPPRLSSSP 901 950 ENSTTRP00000001850/1-1080 GKTMPTTQSF ASDPKYATPQ VIQAPGPRAG PCILPIVRDG KKVSSTHYYL ENSP00000371341/1-1086 GKTMPTTQSF ASDPKYATPQ VIQAPGPRAG PCILPIVRDG KKVSSTHYYL ENSBTAP00000043771/1-1039 GKTMPTTQSF ASDPKYATPQ VIQAPGPRAG PCILPIVRDG KKVSSTHYYL bmy_02319T0/1-1071 GKTMPTTQSF ASDPKYATPQ VIQAPGPRAG PCILPIVRDG KKVSNTHYYL BACU003817/1-1052 GKTMPTTQSF ASDPKYATPQ VIQAPGPRAG PCILPIVRDG KKVSSTHYYL 951 1000 ENSTTRP00000001850/1-1080 LPERPPYLER YQRFLRETRS PEEPTPMPVP LLLPPPGISA PAAPTATVRP ENSP00000371341/1-1086 LPERPSYLER YQRFLREAQS PEEPTPLPVP LLLPPPSTPA PAAPTATVRP ENSBTAP00000043771/1-1039 LPERPPYLER YQRFLHEAQS PRGPDPTPIP LLLPPPSTPA PAAPTATVRP bmy_02319T0/1-1071 LPERPPYLER YQRFLRETRS PEEPAPMPVP LLLPPPGIPA PAAPTATVRP BACU003817/1-1052 LPERPPYLER YQRFLREIRS PEEPAPMPVP LLLPPPGIPA PAAPTATVRP 1001 1050 ENSTTRP00000001850/1-1080 MPQAAPDPKA NFSTNTSNSG AQLPALRATA RLPQRGCPGD GPEAGRPAEK ENSP00000371341/1-1086 MPQAALDPKA NFSTNNSNPG ARPPPPRATA RLPQRGCPGD GPEAGRPADK ENSBTAP00000043771/1-1039 MPQAAPDPKA NFSSNNSNPG ARPSSLRATA RLPQRGYPGD GPEAGRPADK bmy_02319T0/1-1071 MPQAAPDPKA DFSTNTSNSG AQPPALRATA RLPQRGCPGD GPEAGRPADK BACU003817/1-1052 MPQAAPDPKA NFSTNTSNSG AQPPALRATA RLPQRGCPGD GPEAGRPADK 1051 1100 ENSTTRP00000001850/1-1080 IQM------- ---------- ---------- -----VEQLF GLGLRPRGEC ENSP00000371341/1-1086 IQM------- ---------- ---------- -----VEQLF GLGLRPRGEC ENSBTAP00000043771/1-1039 IQMLQAMVHG VTTEECQAAL QSHSWSVQRA AQYLKVEQLF GLGLRPRGEC bmy_02319T0/1-1071 IQMLQAMVHG VTTEECQAAL QSHSWSVQRA AQYLKVEQLF GLGLRPRGEC BACU003817/1-1052 IQMLQAMVHG VTTEECQAAL QSHSWSVQRA AQYLKVEQLF GLGLRPRGEC 1101 1150 ENSTTRP00000001850/1-1080 HKVLEMFDWN LEQAGCHLLG SCGPAHHKR ENSP00000371341/1-1086 HKVLEMFDWN LEQAGCHLLG SWGPAHHKR ENSBTAP00000043771/1-1039 HNVLEMFDWN LEQAGCHLLG SCGPAHHKR bmy_02319T0/1-1071 HKVLEMFDWN LEQAGCHLLG SCGPAHHKR BACU003817/1-1052 HKVLEMFDWN LEQAGCHLLG SCGPAHHK-