KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:55:18 2014 Check: 00 ..
Name: ENSTTRP00000001850/1-1080 Len: 1129 Check: 6642 Weight: 1.00
Name: ENSP00000371341/1-1086 Len: 1129 Check: 3265 Weight: 1.00
Name: ENSBTAP00000043771/1-1039 Len: 1129 Check: 8407 Weight: 1.00
Name: bmy_02319T0/1-1071 Len: 1129 Check: 8425 Weight: 1.00
Name: BACU003817/1-1052 Len: 1129 Check: 5393 Weight: 1.00
//
1 50
ENSTTRP00000001850/1-1080 MLEARPLGTQ GSDAAGALEG RGLRALLPSR ALARSL-GSK GERFAYLRLT
ENSP00000371341/1-1086 MLEARPPRTQ GSDAAGAAAG RGLRALLLSL TAAAGIWGSM GERSAYQRLA
ENSBTAP00000043771/1-1039 ---------- ---------- ---------- ---------- ----------
bmy_02319T0/1-1071 ---------- ------MPAA RRFPGLELSF PLLARL---- -RRRLY----
BACU003817/1-1052 ---------- ------MPAA RRFPGLELSF PLLARL---- -RRRLY----
51 100
ENSTTRP00000001850/1-1080 GAEEGQQRLG SSSMQPEEGT GWLLELLSEV QLQQYFLRLR DDLNVTRLSH
ENSP00000371341/1-1086 GGEEGPQRLG GGRMQPEEGT GWLLELLSEV QLQQYFLRLR DDLNVTRLSH
ENSBTAP00000043771/1-1039 ---------- ---MQPEEGT GWLLELLSEV QLQQYFLRLR DDLNVTRLSH
bmy_02319T0/1-1071 ------TRLG SSSMQPEEGT GWLLELLSEV QLQQYFLRLR DDLNVTRLSH
BACU003817/1-1052 ------TRLG SSSMQPEEGT GWLLELLSEV QLQQYFLRLR DDLNVTRLSH
101 150
ENSTTRP00000001850/1-1080 FEYVKNEDLE KIGMGRPGQR RLWEAVKRRK AMCKRKSWMS K---------
ENSP00000371341/1-1086 FEYVKNEDLE KIGMGRPGQR RLWEAVKRRK ALCKRKSWMS K---------
ENSBTAP00000043771/1-1039 FEYVKNEDLE KIGMGRPGQR RLWEAVKRRK AMCKRKSWMS K---------
bmy_02319T0/1-1071 FEYVKNEDLE KIGMGRPGQR RLWEAVKRRK AVCKRKSWMS K---------
BACU003817/1-1052 FEYVKNEDLE KIGMGRPGQR RLWEAVKRRK AVCKRKSWMS KGSIWPLAAF
151 200
ENSTTRP00000001850/1-1080 --XXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
ENSP00000371341/1-1086 --VFSGKRLE AEFPPHHSQS TFRKTSPAPG GPAGEGPLQS LTCLIGEKDL
ENSBTAP00000043771/1-1039 --VFSGKRLE AEFPPHHSQS TFRKTSPTPG GSAGEGSLQS LTCLIGEKDL
bmy_02319T0/1-1071 --VFSGKRLE AEFPPHHSQS TFRKTSPTPG GPAVEGSLQS LTCLIGEKDL
BACU003817/1-1052 KQVFSGKRLE AEFPPHHSQS TFRKTSPTPG GPAVEGSLQS LTCLIGEKDL
201 250
ENSTTRP00000001850/1-1080 XXXEKLGDS- FGVVRR-EWD -PSGKTVSVA VKCLKPDVLS QPEAMDDFIR
ENSP00000371341/1-1086 RLLEKLGDGS FGVVRRGEWD APSGKTVSVA VKCLKPDVLS QPEAMDDFIR
ENSBTAP00000043771/1-1039 HLFEKLGDGS FGVVRRGEWD APSGKTVSVA VKCLKPDVLS QPEAMDDFIR
bmy_02319T0/1-1071 HLFEKLGDGS FGVVRRGEWD APSGKTVSVA VKCLKPDVLS QPEAMDDFIR
BACU003817/1-1052 HLFEKLGDGS FGVVRRGEWD APSGKTVSVA VKCLKPDVLS QPEAMDDFIR
251 300
ENSTTRP00000001850/1-1080 EVNAMHSLDH -NLIRLYGVV LTPPMKMVTE LAPLGSLLDR LRKHQGHFLL
ENSP00000371341/1-1086 EVNAMHSLDH RNLIRLYGVV LTPPMKMVTE LAPLGSLLDR LRKHQGHFLL
ENSBTAP00000043771/1-1039 EVNAMHSLDH RNLIRLYGVV LTPPMKMVTE LAPLGSLLDR LRKHQGHFLL
bmy_02319T0/1-1071 EVNAMHSLDH RNLIRLYGVV LTPPMKMVTE LAPLGSLLDR LRKHQGHFLL
BACU003817/1-1052 EVNAMHSLDH RNLIRLYGVV LTPPMKMVTE LAPLGSLLDR LRKHQGHFLL
301 350
ENSTTRP00000001850/1-1080 GTLSRYAVQV AEGMGYLESK RFIHRDLAAR NLLLATRDLV KIGDFGLMRA
ENSP00000371341/1-1086 GTLSRYAVQV AEGMGYLESK RFIHRDLAAR NLLLATRDLV KIGDFGLMRA
ENSBTAP00000043771/1-1039 GTLSRYAVQV AEGMGYLEAK RFIHRDLAAR NLLLATRDLV KIGDFGLMRA
bmy_02319T0/1-1071 GTLSRYAVQV AEGMGYLESK RFIHRDLAAR NLLLATRDLV KIGDFGLMRA
BACU003817/1-1052 GTLSRYAVQV AEGMGYLESK RFIHRDLAAR NLLLATRDLV KIGDFGLMRA
351 400
ENSTTRP00000001850/1-1080 LPQNDDHYVM QEHRKVPFAW CAPESLKTRT FSHASDTWMF GVTLWEMFTY
ENSP00000371341/1-1086 LPQNDDHYVM QEHRKVPFAW CAPESLKTRT FSHASDTWMF GVTLWEMFTY
ENSBTAP00000043771/1-1039 LPQNDDHYVM QEHRKVPFAW CAPESLKTRT FSHASDTWMF GVTLWEMFTY
bmy_02319T0/1-1071 LPQNDDHYVM QEHRKVPFAW CAPESLKTRT FSHASDTWMF GVTLWEMFTY
BACU003817/1-1052 LPQNDDHYVM QEHRKVPFAW CAPESLKTRT FSHASDTWMF GVTLWEMFTY
401 450
ENSTTRP00000001850/1-1080 GQEPWIGLNG SQILHKIDKE GERLPRPEDC PQDIYNVMVQ CWAHKPEDRP
ENSP00000371341/1-1086 GQEPWIGLNG SQILHKIDKE GERLPRPEDC PQDIYNVMVQ CWAHKPEDRP
ENSBTAP00000043771/1-1039 GQEPWIGLNG SQILHKIDKE GERLPRPEDC PQDIYNVMVQ CWAHKPEDRP
bmy_02319T0/1-1071 GQEPWIGLNG SQILHKIDKE GERLPRPEDC PQDIYNVMVQ CWAHKPEDRP
BACU003817/1-1052 GQEPWIGLNG SQILHKIDKE GERLPRPEDC PQDIYNVMVQ CWAHKPEDRP
451 500
ENSTTRP00000001850/1-1080 TFVALRDFLL EAQPTDMRAL QDFEEPDKLH IQMNDVITVI EGRAENYWWR
ENSP00000371341/1-1086 TFVALRDFLL EAQPTDMRAL QDFEEPDKLH IQMNDVITVI EGRAENYWWR
ENSBTAP00000043771/1-1039 TFVALRDFLL EAQPTDMRAL QDFEEPDKLH IQMNDVITVI EGRAENYWWR
bmy_02319T0/1-1071 TFVALRDFLL EAQPTDMRAL QDFEEPDKLH IQMNDVITVI EGRAENYWWR
BACU003817/1-1052 TFVALRDFLL EAQPTDMRAL QDFEEPDKLH IQMNDVITVI EGRAENYWWR
501 550
ENSTTRP00000001850/1-1080 GQNTRTLCVG PFPRNVVTSV AGLSAQDISQ PLQNSFIHTG HGDSDPRHCW
ENSP00000371341/1-1086 GQNTRTLCVG PFPRNVVTSV AGLSAQDISQ PLQNSFIHTG HGDSDPRHCW
ENSBTAP00000043771/1-1039 GQNTRTLCVG PFPRNVVTSV AGLSAQDISQ PLQNSFIHTG HGDSDPRHCW
bmy_02319T0/1-1071 GQNTRTLCVG PFPRNVVTSV AGLSAQDISQ PLQNSFIHTG HGDSDPRHCW
BACU003817/1-1052 GQNTRTLCVG PFPRNVVTSV AGLSAQDISQ PLQNSFIHTG HGDSDPRHCW
551 600
ENSTTRP00000001850/1-1080 GFPDRIDELY LGNPMDPPDL LSVELSTSRP TQHLGRVKRE PPPRPPQPAI
ENSP00000371341/1-1086 GFPDRIDELY LGNPMDPPDL LSVELSTSRP PQHLGGVKRE PPPRPPQPAF
ENSBTAP00000043771/1-1039 GFPDKIDELY LGNPMDPPDL LSVELSTSRP TQHLGRVK-- ----------
bmy_02319T0/1-1071 GFPDRIDELY LGNPMDPPDL LSVELSTSRP TQHLGRVK-- ----------
BACU003817/1-1052 GFPDRIDELY LGNPMDPPDL LSVELSTSRP TQHLGRVK-- ----------
601 650
ENSTTRP00000001850/1-1080 FTQKPTYDPV SEDQDPLSSD FKRLGLRKPG LPRGLWLAKP SARVPGTKAG
ENSP00000371341/1-1086 FTQKPTYDPV SEDQDPLSSD FKRLGLRKPG LPRGLWLAKP SARVPGTKAS
ENSBTAP00000043771/1-1039 ---KPTYDPV SEDQDPLSSD FKRLGLRKPG LPRGLWLAKP SARVPGTKAG
bmy_02319T0/1-1071 ---KPTYDPV SEDQDPLSSD FKRLGLRKPG LPRGLWLAKP SARVPGTKAG
BACU003817/1-1052 ---KPTYDPV SEDQDPLSSD FKRLGLRKPG LPRGLWLAKP SARVPGTKAG
651 700
ENSTTRP00000001850/1-1080 RGSS-EVTLI DFGEEPVVPA PRPCAPSLAQ LAMDACSLLD KTPPQSPSRA
ENSP00000371341/1-1086 RGSGAEVTLI DFGEEPVVPA LRPCAPSLAQ LAMDACSLLD ETPPQSPTRA
ENSBTAP00000043771/1-1039 RGGG-EVTLI DFGEEPVVPA PRPCAPSLAQ LAMDACSLLD KTPPQSPTRA
bmy_02319T0/1-1071 RGSS-EITLI DFGEEPVVPA PRPCAPSLAQ LAMDACSLLD KTPPQSPSRA
BACU003817/1-1052 RGSS-EVTLI DFGEEP---- ---------- ---------- -----SPSRA
701 750
ENSTTRP00000001850/1-1080 LPRPLHPTPV VDWDARPLPP PPAYDDVAQD EDDFEVCSIN STLVSAGLSA
ENSP00000371341/1-1086 LPRPLHPTPV VDWDARPLPP PPAYDDVAQD EDDFEICSIN STLVGAGVPA
ENSBTAP00000043771/1-1039 LPRPLHPTPV VDWDARPLPP PPAYDDVAQD EDDFEVCSIN STLVGAGVSA
bmy_02319T0/1-1071 LPRPLHPTPV VDWDARPLPP PPAYDDVAQD EDDFEVCSIN STLVSAEVSA
BACU003817/1-1052 LPRPLHPTPV VDWDARPLPP PPAYDDVAQD EDDFEVCSIN STLVSAGVSA
751 800
ENSTTRP00000001850/1-1080 GPSQGETNYA FVPEPARLFP ALEDNLFLPP QGGGKPPNSA QTAEIFQALQ
ENSP00000371341/1-1086 GPSQGQTNYA FVPEQARPPP PLEDNLFLPP QGGGKPPSSA QTAEIFQALQ
ENSBTAP00000043771/1-1039 EPSQGETNYA FVPEPARLLP PLEDNLFLPP QSGGKPPNSA QTAEIFQALQ
bmy_02319T0/1-1071 GPSQGETNYA FVPEPARLFP PLEDNLFLPP QGGGKPPNSA QTAEIFQALQ
BACU003817/1-1052 GPSQGETNYA FVPEPARLFP PLEDNLFLPP QGGGKPPNSA QTAEIFQALQ
801 850
ENSTTRP00000001850/1-1080 QECMRQLQVP AGALVPSPSP VGDDKPQVPP RVPIPPRPTR PRGELSPAPS
ENSP00000371341/1-1086 QECMRQLQAP AGSPAPSPSP GGDDKPQVPP RVPIPPRPTR PHVQLSPAPP
ENSBTAP00000043771/1-1039 QECMRQLQVP PGSLVPSPSP GGDDKPQVPP RVPIPPRPTR SRGELSPVPP
bmy_02319T0/1-1071 QECMRQLQVP AGSLVPSPSP VGDDKPQVPP RVPIPPRPTR PRGELSPAPS
BACU003817/1-1052 QECMRQLQVP ARSLVPSPSP VGDDKPQVPP RVPIPPRPTR PRGELSPAPS
851 900
ENSTTRP00000001850/1-1080 GEEETGRWPG PASPPRVPPR EPLSPQGSRT PSPLVPRGSS PLPPRLSSSP
ENSP00000371341/1-1086 GEEETSQWPG PASPPRVPPR EPLSPQGSRT PSPLVPPGSS PLPPRLSSSP
ENSBTAP00000043771/1-1039 GEEEMGRWPG PASPPRVPPR EPLSPQGSRT PSPLVPPGSS PLPPRLSSSP
bmy_02319T0/1-1071 GEEEMGRWPG PASPPRVPPR EPLSPQGSRT PSPLVPRGSS PLPPRLSSSP
BACU003817/1-1052 GEEEMGQWPG PASPPRVPPR EPLSPQGSRT PSPLVPRGSS PLPPRLSSSP
901 950
ENSTTRP00000001850/1-1080 GKTMPTTQSF ASDPKYATPQ VIQAPGPRAG PCILPIVRDG KKVSSTHYYL
ENSP00000371341/1-1086 GKTMPTTQSF ASDPKYATPQ VIQAPGPRAG PCILPIVRDG KKVSSTHYYL
ENSBTAP00000043771/1-1039 GKTMPTTQSF ASDPKYATPQ VIQAPGPRAG PCILPIVRDG KKVSSTHYYL
bmy_02319T0/1-1071 GKTMPTTQSF ASDPKYATPQ VIQAPGPRAG PCILPIVRDG KKVSNTHYYL
BACU003817/1-1052 GKTMPTTQSF ASDPKYATPQ VIQAPGPRAG PCILPIVRDG KKVSSTHYYL
951 1000
ENSTTRP00000001850/1-1080 LPERPPYLER YQRFLRETRS PEEPTPMPVP LLLPPPGISA PAAPTATVRP
ENSP00000371341/1-1086 LPERPSYLER YQRFLREAQS PEEPTPLPVP LLLPPPSTPA PAAPTATVRP
ENSBTAP00000043771/1-1039 LPERPPYLER YQRFLHEAQS PRGPDPTPIP LLLPPPSTPA PAAPTATVRP
bmy_02319T0/1-1071 LPERPPYLER YQRFLRETRS PEEPAPMPVP LLLPPPGIPA PAAPTATVRP
BACU003817/1-1052 LPERPPYLER YQRFLREIRS PEEPAPMPVP LLLPPPGIPA PAAPTATVRP
1001 1050
ENSTTRP00000001850/1-1080 MPQAAPDPKA NFSTNTSNSG AQLPALRATA RLPQRGCPGD GPEAGRPAEK
ENSP00000371341/1-1086 MPQAALDPKA NFSTNNSNPG ARPPPPRATA RLPQRGCPGD GPEAGRPADK
ENSBTAP00000043771/1-1039 MPQAAPDPKA NFSSNNSNPG ARPSSLRATA RLPQRGYPGD GPEAGRPADK
bmy_02319T0/1-1071 MPQAAPDPKA DFSTNTSNSG AQPPALRATA RLPQRGCPGD GPEAGRPADK
BACU003817/1-1052 MPQAAPDPKA NFSTNTSNSG AQPPALRATA RLPQRGCPGD GPEAGRPADK
1051 1100
ENSTTRP00000001850/1-1080 IQM------- ---------- ---------- -----VEQLF GLGLRPRGEC
ENSP00000371341/1-1086 IQM------- ---------- ---------- -----VEQLF GLGLRPRGEC
ENSBTAP00000043771/1-1039 IQMLQAMVHG VTTEECQAAL QSHSWSVQRA AQYLKVEQLF GLGLRPRGEC
bmy_02319T0/1-1071 IQMLQAMVHG VTTEECQAAL QSHSWSVQRA AQYLKVEQLF GLGLRPRGEC
BACU003817/1-1052 IQMLQAMVHG VTTEECQAAL QSHSWSVQRA AQYLKVEQLF GLGLRPRGEC
1101 1150
ENSTTRP00000001850/1-1080 HKVLEMFDWN LEQAGCHLLG SCGPAHHKR
ENSP00000371341/1-1086 HKVLEMFDWN LEQAGCHLLG SWGPAHHKR
ENSBTAP00000043771/1-1039 HNVLEMFDWN LEQAGCHLLG SCGPAHHKR
bmy_02319T0/1-1071 HKVLEMFDWN LEQAGCHLLG SCGPAHHKR
BACU003817/1-1052 HKVLEMFDWN LEQAGCHLLG SCGPAHHK-