KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:55:20 2014 Check: 00 .. Name: ENSTTRP00000012860/1-327 Len: 1016 Check: 9660 Weight: 1.00 Name: BACU007620/1-1016 Len: 1016 Check: 2534 Weight: 1.00 Name: bmy_21975T0/1-576 Len: 1016 Check: 8563 Weight: 1.00 Name: ENSBTAP00000043804/1-327 Len: 1016 Check: 7659 Weight: 1.00 // 1 50 ENSTTRP00000012860/1-327 ---------- ---------- -----MAW-- --------W- ---------- BACU007620/1-1016 MLFLMLVLQP LELSPGRFLH HLPNHRSFHL GTSHQRNNWE KLKSCEGAFD bmy_21975T0/1-576 -------MTC FQAVQRQGPQ PMPEGQGWRG CGSRPTREWI GSQAPVGP-- ENSBTAP00000043804/1-327 ---------- ---------- -----MAW-- --------W- ---------- 51 100 ENSTTRP00000012860/1-327 ---------- ---------- ---------- ---------- ---------- BACU007620/1-1016 LYFIVDASQK ANATWKDIYE LVDEIVEKYT NPNLRMSFIT YSTLGHTLMK bmy_21975T0/1-576 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000043804/1-327 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000012860/1-327 ---------- ---------- ---------- ---------- ---------- BACU007620/1-1016 LTSDRNEIRD GLSRLQNIVP SGATHMQEGF KKANEQIERV YSKSKLPADV bmy_21975T0/1-576 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000043804/1-327 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000012860/1-327 ---------- ---------- ---------- ---------- --------KA BACU007620/1-1016 TVLSQDAGTF HHLRGPSTWT RKSRAEDKNS CQSSFDLYFI LDMSGSVNNN bmy_21975T0/1-576 -DVANSMGSM LGLLLQDLLR SGPCRHRPLS LPPSVRLLFL PHLCRPVHSS ENSBTAP00000043804/1-327 ---------- ---------- ---------- ---------- --------KA 201 250 ENSTTRP00000012860/1-327 W--------- ---------- ---------- ---------- ---------- BACU007620/1-1016 WMDIYTFVED LVKKFDNPNL RMSFITYSTL GHTLMKLTSD RNEIRDGLSR bmy_21975T0/1-576 WLLVL----- ---------- ---------- ---------- ---------- ENSBTAP00000043804/1-327 W--------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000012860/1-327 ---------- ---------- ---------- ---------- ---------- BACU007620/1-1016 LQNIVPSGAT HMQEGFKKAN EQIERVYSKK NKVPSMIISL TDGTLEEAPF bmy_21975T0/1-576 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000043804/1-327 ---------- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000012860/1-327 ---------- ---------- ---------- ---------- ---------- BACU007620/1-1016 EMTKEEADKA RKMGATVYCV GVKDFEEDQL LEIADSPRHV FGVDQGFKAL bmy_21975T0/1-576 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000043804/1-327 ---------- ---------- ---------- ---------- ---------- 351 400 ENSTTRP00000012860/1-327 ---------- ---------- ---------- ---------- ---------- BACU007620/1-1016 KYIVEPLGTK SCIEITAVEP SSVCTGDENE LMISGKGFNN AKKKDEVICR bmy_21975T0/1-576 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000043804/1-327 ---------- ---------- ---------- ---------- ---------- 401 450 ENSTTRP00000012860/1-327 ---------- ---------- ---------- ---------- ---------- BACU007620/1-1016 FKFSDKQFFD IKAKSVKDTS ITCPGVKIEK PDQEVFVEVS LNNGVSVINN bmy_21975T0/1-576 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000043804/1-327 ---------- ---------- ---------- ---------- ---------- 451 500 ENSTTRP00000012860/1-327 ---------- ---------- ---------- ---------- ---------- BACU007620/1-1016 NVSITSKNCA STREGAPDDK SAPPAAPPAD PPADPPTAQQ PPEEPPSSPP bmy_21975T0/1-576 ---------- --RSGCLAAP QCPIAGGKMS MPGPATRVML PTKCAASCDG ENSBTAP00000043804/1-327 ---------- ---------- ---------- ---------- ---------- 501 550 ENSTTRP00000012860/1-327 ---------- ---------- ---------- ---------- ---------- BACU007620/1-1016 PQFVPYVNPL YFSALIPALL LFLLVLWCIW WLCRRKTTKE PPPVQKPERG bmy_21975T0/1-576 QQTHGWGSQV CASGPAPALL LEPSVPKCKG PACYQGPVEE PGHSALPSST ENSBTAP00000043804/1-327 ---------- ---------- ---------- ---------- ---------- 551 600 ENSTTRP00000012860/1-327 ---------- ---------- ---------- ---------- ---------- BACU007620/1-1016 KLDTLCDFVQ RCNQMSLMWC PPRDTGKCLN FALMKPHCGQ LHCSPKPWAA bmy_21975T0/1-576 LLPMDILYSF TADLGTWLTL PHS------- ---------- ---------- ENSBTAP00000043804/1-327 ---------- ---------- ---------- ---------- ---------- 601 650 ENSTTRP00000012860/1-327 ---------- ---------- ---------- ---------- ---------- BACU007620/1-1016 AALPTPAASP PFCTLAQLPP HPPSPHFQKE QPEDCVEKGA LEPGSGNLFV bmy_21975T0/1-576 ---PKPTVIP GNFNIHRMTQ DLLILDLLAS NSLHCETSLS LTPASCRHFH ENSBTAP00000043804/1-327 ---------- ---------- ---------- ---------- ---------- 651 700 ENSTTRP00000012860/1-327 ---------- ---------- ----IEQKGV SVKSSRHFNP DPDAETLYKA BACU007620/1-1016 TNVTTQGPSD SDMLGLDSEE TRGKIEQKGV SVKSSPHFNP DPDAETLYKA bmy_21975T0/1-576 LS-------- ---------- ---PIEQKGV SVKSSPHFNP DPDAETLYKA ENSBTAP00000043804/1-327 ---------- ---------- ----VEQEGV SVKGSPHFNP DPDAETLYKA 701 750 ENSTTRP00000012860/1-327 MKGVGTNEQA IIDVLTQRSN AQRQQIAKSF MAQFGKDLIE TLKSELSAEF BACU007620/1-1016 MKGIGTNEQA IIDVLTQRSN AQRQQIAKSF KAQFGKDLTE TLKSELSSNF bmy_21975T0/1-576 MKGIGTNEQA IIDVLTQRSN AQRQQIAKSF NAQFGKDLTE TLKSELSSNF ENSBTAP00000043804/1-327 MKGIGTNEQA IIDVLTKRSN AQRQQIAKSF KAQFGKDLIE TLKSELSGKF 751 800 ENSTTRP00000012860/1-327 ERLIIALMYP PYRYEAKELY DAMKXXXXXX XXXXXXXXXX XXXXXXXXXX BACU007620/1-1016 ERLIIALMYP PYGYEAKELY DAMKGLGTRE GVIIEILASR TKNQLQEIMK bmy_21975T0/1-576 ERLIIALMYP PYRYEAKELY DAMKGLGTRE GVIIEILASR TKNQLQEIMK ENSBTAP00000043804/1-327 ERLIIALMYP PYRYEAKELY DAMKGIGTKE GVIIEILASR TKNQLQEIMK 801 850 ENSTTRP00000012860/1-327 XXXXXYWSSL EEDIQADTSG YLERILVCLL QGSRDDLCGF VDPGLALQDA BACU007620/1-1016 AYEEDYGSSL EEDIQADTSG YLERILVCLL QGSRDDLCGF VDPGLALQDA bmy_21975T0/1-576 AYEEDYGSSL EEDIQADTSG YLERILVCLL QGSRDDLGGF VDPGLALQDA ENSBTAP00000043804/1-327 AYEEDYGSNL EEDIKADTSG YLERILVCLL QGSRDDLSGY VDPGLALQDA 851 900 ENSTTRP00000012860/1-327 QDLYAAGEKI CGTDEMKFIT ILCTRSATHL MRVFEDYEKM ASKSIEDSIK BACU007620/1-1016 QDLYTAGEKI CGTDEMKFIT ILCTRSATHL MRVFEEYEKI ASKSIEDSIK bmy_21975T0/1-576 QDLYTAGEKI CGTDEMKFIS ILCTRSATHL MRVFEEYEKI ASKSIEDSIK ENSBTAP00000043804/1-327 QDLYAAGEKI CGTDEMKFIT ILCTRSATHL MRVFEEYEKI ANKSIEDSIK 901 950 ENSTTRP00000012860/1-327 SETHGSLEEA MLTVVKCTRN LHSYFAERLY YAMKGAGTHD GTLIRIIVSR BACU007620/1-1016 SETHGSLEEA MLTVVKCTRN LHSYFAERLY YAMKGAGTHD GTLIRNIVSR bmy_21975T0/1-576 SETHGSLEEA MLTVVKCTRN LHSYFAERLY YAMKGAGTHD GTLIRNIVSR ENSBTAP00000043804/1-327 SETHGSLEEA MLTVVKCTRN LHGYFAERLY FAMKGAGTLD GTLIRNIVSR 951 1000 ENSTTRP00000012860/1-327 SEIDLNLIKC RFKEMYGKTL SSMIVEDTSS DYKNAL---- ---------- BACU007620/1-1016 SEIDLNFIKC QFKEMYGKTL SSMIMEDTSS DYKNALXXXX XXXXXXXXXG bmy_21975T0/1-576 SEIDLNLIKC QFKEMYGKTL SSMIMEDTSS DYKNAL---- ---------- ENSBTAP00000043804/1-327 SEIDLNLIKN QFKKMYGKTL SSMIMEDTSG DYKNAL---- ---------- 1001 1050 ENSTTRP00000012860/1-327 -----LNLVG SDP--- BACU007620/1-1016 RHKPRLQECP AEPGGQ bmy_21975T0/1-576 -----LNLVG SDP--- ENSBTAP00000043804/1-327 -----LNLVG SDL---