KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:55:20 2014 Check: 00 .. Name: bmy_21651T0/1-294 Len: 574 Check: 85 Weight: 1.00 Name: ENSP00000358795/1-574 Len: 574 Check: 7218 Weight: 1.00 Name: ENSBTAP00000043808/1-574 Len: 574 Check: 8659 Weight: 1.00 Name: ENSTTRP00000003162/1-574 Len: 574 Check: 7971 Weight: 1.00 Name: BACU012346/1-557 Len: 574 Check: 6177 Weight: 1.00 // 1 50 bmy_21651T0/1-294 MG-------- ---------- ---------- --------TG RCGPRD---- ENSP00000358795/1-574 MGNNFSSIPS LPRGNPSRAP RGHPQNLKDS IGGPFPVTSH RCHHKQKHCP ENSBTAP00000043808/1-574 MGNNFSSIPS LPRGNPSRAP RAHPQNLKDS TGGPCPVPSH RCHHKQKHCP ENSTTRP00000003162/1-574 MGNIFSSIPS LPRGNQSLAP RSHPQKLKDS IGGPFPVTSH RCHHKQKYCP BACU012346/1-557 MGGQITR--- ---------- ----STFHDS IGGPFPVTSH RCHHKQKYCP 51 100 bmy_21651T0/1-294 ---------- ---------- ---------- ---------- ------GRPV ENSP00000358795/1-574 AVLPSGGLPA TPLLFHPHTK GSQILMDLSH KAVKRQASFC NAITFSNRPV ENSBTAP00000043808/1-574 PVLPGGGLPA TPLLFHPHTK GSQILMDLSH KAVKRQASFC NAITFSNRPV ENSTTRP00000003162/1-574 PVLPGGGLPA TPLLFHPHTK GSQILMDLSH KAVKRQASFC NAITFSNRPV BACU012346/1-557 PVLPGGGLPA TPLLFHPHTK GSQILMDLSH KAVKRQASFC NAITFSNRPV 101 150 bmy_21651T0/1-294 ---------- ---------- ---------- ------SLPA ---------- ENSP00000358795/1-574 LIYEQVRLKI TKKQCCWSGA LRLGFTSKDP SRIHPDSLPK YACPDLVSQS ENSBTAP00000043808/1-574 LIYEQVRLKI TKKQCCWSGA LRLGFTSKDP SRIHPDSLPK YACPDLVSQS ENSTTRP00000003162/1-574 LIYEQVRLKL TXKQCCWSGA LRLGFTSKDP SRIHPDSLPK YACPDLVSQS BACU012346/1-557 LIYEQVRLKI TKKQCCWSGA LRLGFTSKDP SRIHPDSLPK YACPDLVSQS 151 200 bmy_21651T0/1-294 ---------- ---------- ---------- ---------- ---------- ENSP00000358795/1-574 GFWAKALPEE FANEGNIIAF WVDKKGRVFH RINDSAVMLF FSGVRTADPL ENSBTAP00000043808/1-574 GFWAKALPEE FANEGNIIAF WVDKKGRVFY RINDSAAMLF FNGVRTADPL ENSTTRP00000003162/1-574 GFWAKALPEE FANEGNIIAF WVDKKGRVFY RINDSAAMLF FNGVRTADPL BACU012346/1-557 GFWAKALPEE FANEGNIIAF WVDKKGRVFY RINDSAAMLF FNGVRTADPL 201 250 bmy_21651T0/1-294 ---------- -----ADSEL VLPDCLRPRS FTALRRPSLR REAEEARLSV ENSP00000358795/1-574 WALVDVYGLT RGVQLLDSEL VLPDCLRPRS FTALRRPSLR READDARLSV ENSBTAP00000043808/1-574 WALVDVYGLT RGVQLLDSEL VLPDCLRPRS FTALRRPSLR READEARLSV ENSTTRP00000003162/1-574 WALVDVYGLT RGVQLLDSEL VLPDCVRPRS FTALRRPSLR REAEEARLSV BACU012346/1-557 WALVDVYGLT RGVQLLDSEL VLPDCLRPRS FTALRRPSLG REAEEARLSV 251 300 bmy_21651T0/1-294 SLCDLNVPGA DGDETAPAAG CPIPQNSLNS QHSRALPAQL DGDLRFHALR ENSP00000358795/1-574 SLCDLNVPGA DGDEAAPAAG CPIPQNSLNS QHSRALPAQL DGDLRFHALR ENSBTAP00000043808/1-574 SLCDLNVPGS DGDEGTPAAG CPIPQNSLNS QHSRALPPQL DGDLRFHALR ENSTTRP00000003162/1-574 SLCDLNVPGA DGDETAPAAG CAIPQNSLNS QHSHALPAQL DGDLRFHALR BACU012346/1-557 SLCDLNVPGA DGDETAPAAG CPIPQNSLNS QHSRALPAQL DGDLRFHALR 301 350 bmy_21651T0/1-294 AGAHVRILDE QTVARLEHGR DERALVFTSR PVRVAETIFV KVTRSGGARP ENSP00000358795/1-574 AGAHVRILDE QTVARVEHGR DERALVFTSR PVRVAETIFV KVTRSGGARP ENSBTAP00000043808/1-574 AGAHVRILDE QTVARLEHGR DERALVFTSR PVRVAETIFV KVTRSSGARP ENSTTRP00000003162/1-574 AGAHVRILDE HTVARLEHGR DERALVFTSR PVRVAETIFV KITRSGGARP BACU012346/1-557 AGAHVRILDE QTVARLEHGR DERALVFTSR PVRVAETIFV KVTRSGGARP 351 400 bmy_21651T0/1-294 GALSFGVTTC DPGTLRPADL PFSPEALVDR KEFWAVCRVP GPLHSGDILG ENSP00000358795/1-574 GALSFGVTTC DPGTLRPADL PFSPEALVDR KEFWAVCRVP GPLHSGDILG ENSBTAP00000043808/1-574 GALSLGVTTC DPGTLRPADL PFSPEALVDR KEFWAVCRVP GPLHSGDILG ENSTTRP00000003162/1-574 GALSFGVTTC DLGTLRPADL PFSPEALVDR KEFWAVCRVP GLLHSGDILG BACU012346/1-557 GALSFGVTTC DPGTLRPADL PFSPEALVDR KEFWAVCRVP GPLHSGDILG 401 450 bmy_21651T0/1-294 LVVNPDGELH LSHNGSAAGM QLCVDASQPL WMLFGLHGAI TQIRILGEC- ENSP00000358795/1-574 LVVNADGELH LSHNGAAAGM QLCVDASQPL WMLFGLHGTI TQIRILGSTI ENSBTAP00000043808/1-574 LVVNADGELH LSHNGVAAGM QLCVDASQPL WMLFGLHGSI TQIRILGSTI ENSTTRP00000003162/1-574 LVVNSDGELH LSHNGSAAGM QLCVDASQLL WMLFGLHGAI TQIRILSSTI BACU012346/1-557 LVVNPDGELH LSHNGAAAGM QLCVDASQPL WMLFGLHGAI TQIRILGSTI 451 500 bmy_21651T0/1-294 ---------- ---------- ---------- ---------- --------PR ENSP00000358795/1-574 LAERGIPSLP CSPASTPTSP SALGSRLSDP LLSTCSSGPL GSSAGGTAPN ENSBTAP00000043808/1-574 LAERGIPSLP CSPASTPTSP STLGIRLSDP SLGTCSSGPL GSSAGGTAPN ENSTTRP00000003162/1-574 LAERGIPSLS CSPASTPTSP SALGIRLSDP LLSTCSSGPL GNSAGGTAPN BACU012346/1-557 LAERGIPSLP CSPASTPTSP SALGIRLSDP LLSTCSSGPL GNSAGGTAPN 501 550 bmy_21651T0/1-294 PRARLPRG-- APGG--WRLQ TQPSLEEG-- ---------- RVWVGGKSAH ENSP00000358795/1-574 SPVSLPESPV TPGLGQWSDE CTICYEHAVD TVIYTCGHMC LCYACGLRLK ENSBTAP00000043808/1-574 SPVSLPESPV TPGGGPWSDE CTICYEHAVD TVIYTCGHMC LCYACGLRLK ENSTTRP00000003162/1-574 SPVSLPQSPV TPGGGPWSDE CTICYEHVVD TVIYTCGHMC LCYACGLRLK BACU012346/1-557 SPVSLPESPV TPGGGPWSDE CTICYEHAVD TVIYTCGHMC LCYACGLRLK 551 600 bmy_21651T0/1-294 PALHGV---- ---------- ---- ENSP00000358795/1-574 KALHACCPIC RRPIKDIIKT YRSS ENSBTAP00000043808/1-574 KALHACCPIC RRPIKDIIKT YRSS ENSTTRP00000003162/1-574 KALHACCPIC RRPIKDIIKT YRSS BACU012346/1-557 KALHACCPIC RRPIKDIIKT YRSS