KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:55:21 2014 Check: 00 .. Name: ENSTTRP00000008770/1-618 Len: 821 Check: 2142 Weight: 1.00 Name: bmy_05251T0/1-729 Len: 821 Check: 3618 Weight: 1.00 Name: ENSP00000316589/1-620 Len: 821 Check: 3889 Weight: 1.00 Name: BACU018114/1-620 Len: 821 Check: 3870 Weight: 1.00 Name: ENSBTAP00000043820/1-620 Len: 821 Check: 4034 Weight: 1.00 // 1 50 ENSTTRP00000008770/1-618 MAAATAELGA GNLQVGDSSG GGTGCGLPSP GEQELSRRLQ RLYPAVNQHE bmy_05251T0/1-729 ---------- ---MLRKSSR G--------- ---------- ---------- ENSP00000316589/1-620 MAAATADPGA GNPQPGDSSG GGAGGGLPSP GEQELSRRLQ RLYPAVNQQE BACU018114/1-620 MAAATADPGA GNLQVGDSSG GGTGCGLPSP GEQELSRRLQ RLYPAVNQHE ENSBTAP00000043820/1-620 MAAATADPGA GSPQVGDSSG GATGCGLPSP GEQELSRRLQ RLYPAVNQHE 51 100 ENSTTRP00000008770/1-618 TPLPRSWSPK DKYNYIGLSQ GNLRVHYKGH GKNHKDAASV RATHPIPAAC bmy_05251T0/1-729 ----KHWQTL THWP------ -------KGG ASEHLSAA-- ---------- ENSP00000316589/1-620 TPLPRSWSPK DKYNYIGLSQ GNLRVHYKGH GKNHKDAASV RATHPIPAAC BACU018114/1-620 TPLPRSWSPK DKYNYIGLSQ GNLRVHYKGH GKNHKDAASV RATHPIPAAC ENSBTAP00000043820/1-620 TPLPRSWSPK DKYNYIGLSQ GNLRVHYKGH GKNHKDAASV RATHPIPAAC 101 150 ENSTTRP00000008770/1-618 GIYYFEVKIV SKGRDGYMGX XXXXXXXXXX XXXXXWDKHS YGYHGDDGHS bmy_05251T0/1-729 ------VDVV LRGT-----I GTASS----- -----WDKHS YGYHGDDGHS ENSP00000316589/1-620 GIYYFEVKIV SKGRDGYMGI GLSAQGVNMN RLPG-WDKHS YGYHGDDGHS BACU018114/1-620 GIYYFEVKIV SKGRDGYMGI GLSAQGVNMN RLPG-WDKHS YGYHGDDGHS ENSBTAP00000043820/1-620 GIYYFEVKIV SKGRDGYMGI GLSAQGVNMN RLPG-WDKHS YGYHGDDGHS 151 200 ENSTTRP00000008770/1-618 FCSSGTGQPY GPTFTTGDVI G-CVNLINVT CFYTKNGHSL GIAFTDLPXX bmy_05251T0/1-729 FCSSGTGQPY GPTFTTGDVI GCCVNLINGT CFYTKNGHSL GIAFTDLPAN ENSP00000316589/1-620 FCSSGTGQPY GPTFTTGDVI GCCVNLINGT CFYTKNGHSL GIAFTDLPAN BACU018114/1-620 FCSSGTGQPY GPTFTTGDVI GCCVNLINGT CFYTKNGHSL GIAFTDLPAN ENSBTAP00000043820/1-620 FCSSGTGQPY GPTFTTGDVI GCCVNLINGT CFYTKNGHSL GIAFTDLPAN 201 250 ENSTTRP00000008770/1-618 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_05251T0/1-729 LYPTVGLQTP GEIVDANFGQ QPFLFDIEDY MREWRAKVQG TVHCFPISAR ENSP00000316589/1-620 LYPTVGLQTP GEIVDANFGQ QPFLFDIEDY MREWRAKVQG TVHCFPISAR BACU018114/1-620 LYPTVGLQTP GEIVDANFGQ QPFLFDIEDY MREWRAKVQG TVHCFPISAR ENSBTAP00000043820/1-620 LYPTVGLQTP GEIVDANFGQ QPFLFDIEDY MREWRAKVQG TVHCFPISAR 251 300 ENSTTRP00000008770/1-618 XXXXXXXXXX ---------- ---------M VSSYLVHHGY CATATAFARM bmy_05251T0/1-729 LGEWQAVLQN SPELLLVKPL PPQLDRKALM VSSYLVHHGY CATATAFARM ENSP00000316589/1-620 LGEWQAVLQN ---------- ---------M VSSYLVHHGY CATATAFARM BACU018114/1-620 LGEWQAVLQN ---------- ---------M VSSYLVHHGY CATATAFARM ENSBTAP00000043820/1-620 LGEWQAVLQN ---------- ---------M VSSYLVHHGY CATATAFARM 301 350 ENSTTRP00000008770/1-618 TETPIQEEQA SIKNRQK--- ---------- ---------- ---------- bmy_05251T0/1-729 TETPIQEEQA SIKNRQKKPR PARQSERDPR LGIYPEVAPS KTHQAPGQER ENSP00000316589/1-620 TETPIQEEQA SIKNRQK--- ---------- ---------- ---------- BACU018114/1-620 TETPIQEEQA SIKNRQK--- ---------- ---------- ---------- ENSBTAP00000043820/1-620 TETPIQEEQA SIKNRQK--- ---------- ---------- ---------- 351 400 ENSTTRP00000008770/1-618 ---------- ---------- ---------- ---------- ---------- bmy_05251T0/1-729 DADGLRGVNV RAASVRRMTS SLCRGRAAAP EDHRDVGPGP ESMSSHCQPP ENSP00000316589/1-620 ---------- ---------- ---------- ---------- ---------- BACU018114/1-620 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000043820/1-620 ---------- ---------- ---------- ---------- ---------- 401 450 ENSTTRP00000008770/1-618 ---------- ---------- ---------- IQKLVLEGRV GEAIETTQRF bmy_05251T0/1-729 VKPEERMCRR VAVRKVCGPS LTAAFLLSTE IQKLVLEGRV GEAIETTQRF ENSP00000316589/1-620 ---------- ---------- ---------- IQKLVLEGRV GEAIETTQRF BACU018114/1-620 ---------- ---------- ---------- IQKLVLEGRV GEAIETTQRF ENSBTAP00000043820/1-620 ---------- ---------- ---------- IQNLVLEGRV GEAIETTQRF 451 500 ENSTTRP00000008770/1-618 YPGLLEHNPN LLFMLKCRQF VEMVNGTDSE VRSLSSRSPK SQDSYPGSPS bmy_05251T0/1-729 YPGLLEHNPN LLFMLKCRQF VEMVNGTDSE VRSLSSRSPK SQDSYPGSPS ENSP00000316589/1-620 YPGLLEHNPN LLFMLKCRQF VEMVNGTDSE VRSLSSRSPK SQDSYPGSPS BACU018114/1-620 YPGLLEHNPN LLFMLKCRQF VEMVNGTDSE VRSLSSRSPK SQDSYPGSPS ENSBTAP00000043820/1-620 YPGLLEHNPN LLFMLKCRQF VEMVNGTDSE VRSLSSRSPK SQDSYPGSPS 501 550 ENSTTRP00000008770/1-618 LSPRHGPTSS HMHNTGADSP SCSNGVASTK SKQNHSKYPP PSSSSSSSSS bmy_05251T0/1-729 LSPRHGPTSS HMHNTGADSP SCSNGVASTK SKQNHSKYPP PSSSSSSSSS ENSP00000316589/1-620 LSPRHGPSSS HMHNTGADSP SCSNGVASTK SKQNHSKYPA PSSSSSSSSS BACU018114/1-620 LSPRHGPTSS HMHNTGADSP SCSNGVASTK SKQNHSKYPP PSSSSSSSSS ENSBTAP00000043820/1-620 LSPRHGPTSS HTHNTGADSP SCSNGVASTK SKQNHSKYPA PSSSSSSSSS 551 600 ENSTTRP00000008770/1-618 SSSSSPSSVN YSESNSTDST KSQPHSSTSN QET------- ---------- bmy_05251T0/1-729 SSSSSPSSVN YSESNSTDST KSQPHSSTSN QETRCLFCSA SSSCLLLCAH ENSP00000316589/1-620 SSSSSPSSVN YSESNSTDST KSQHHSSTSN QET------- ---------- BACU018114/1-620 SSSSSPSSVN YSESNSTDST KSQPHSSTSN QET------- ---------- ENSBTAP00000043820/1-620 SSSSSPSSVN YSESNSTDST KSQPHSSTSN QET------- ---------- 601 650 ENSTTRP00000008770/1-618 ---------- ---------- ---------- ---------- ---------- bmy_05251T0/1-729 CSLSFERHPA LYPPPPSQFT HCILRLKPKW RPNQAAPVTS PLLTPTSTLL ENSP00000316589/1-620 ---------- ---------- ---------- ---------- ---------- BACU018114/1-620 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000043820/1-620 ---------- ---------- ---------- ---------- ---------- 651 700 ENSTTRP00000008770/1-618 -SDSEMEMEA EHYPNGVLES MSTRIVNGAY KHEDLQTDES SMDDGHPRRQ bmy_05251T0/1-729 HSDSEMEMEA EHYPNGVLES MSTRIVNGAY KHEDLQTDES SMDDGHPRRQ ENSP00000316589/1-620 -SDSEMEMEA EHYPNGVLGS MSTRIVNGAY KHEDLQTDES SMDDRHPRRQ BACU018114/1-620 -SDSEMEMEA EHYPNGVLES MSTRIVNGAY KHEDLQTDES SMDDGHPRRQ ENSBTAP00000043820/1-620 -SDSEMEMEA EHYPNGVLES MSTRIVNGAY KHEDLQTDES SMDDGHPRRQ 701 750 ENSTTRP00000008770/1-618 LCGGNQAATE RIILFGRELQ ALSEQLGREY GKNLAHTEML QDAFSLLAYS bmy_05251T0/1-729 LCGGNQAATE RIILFGRELQ ALSEQLGREY GKNLAHTEML QDAFSLLAYS ENSP00000316589/1-620 LCGGNQAATE RIILFGRELQ ALSEQLGREY GKNLAHTEML QDAFSLLAYS BACU018114/1-620 LCGGNQAATE RIILFGRELQ ALSEQLGREY GKNLAHTEML QDAFSLLAYS ENSBTAP00000043820/1-620 LCGGNQAATE RIILFGRELQ ALSEQLGREY GKNLAHTEML QDAFSLLAYS 751 800 ENSTTRP00000008770/1-618 DPWSCPVGQQ LDPIQREPVC AALNSAI--S QNLPKQPPLM LALGQASECL bmy_05251T0/1-729 DPWSCPVGQQ LDPIQREPVC AALNSAILES QNLPKQPTLM LALGQASECL ENSP00000316589/1-620 DPWSCPVGQQ LDPIQREPVC AALNSAILES QNLPKQPPLM LALGQASECL BACU018114/1-620 DPWSCPVGQQ LDPIQREPVC AALNSAILES QNLPKQPPLM LALGQASECL ENSBTAP00000043820/1-620 DPWSCPVGQQ LDPIQREPVC AALNSAILES QNLPKQPPLM LALGQASECL 801 850 ENSTTRP00000008770/1-618 RLMARAGLGS CSFARVDDYL H bmy_05251T0/1-729 RLMARAGLGS CSFARVDDYL H ENSP00000316589/1-620 RLMARAGLGS CSFARVDDYL H BACU018114/1-620 RLMARAGLGS CSFARVDDYL H ENSBTAP00000043820/1-620 RLMARAGLGS CSFARVDDYL H