KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:55:22 2014 Check: 00 ..
Name: ENSP00000296350/1-738 Len: 757 Check: 9754 Weight: 1.00
Name: ENSTTRP00000011738/1-581 Len: 757 Check: 2724 Weight: 1.00
Name: bmy_02299T0/1-737 Len: 757 Check: 5609 Weight: 1.00
Name: ENSBTAP00000043824/1-739 Len: 757 Check: 1517 Weight: 1.00
Name: BACU003800/1-428 Len: 757 Check: 4268 Weight: 1.00
//
1 50
ENSP00000296350/1-738 MRGPSGALWL LLALRTVLGG MEVRWCATSD PEQHKCGNMS EAFREAGIQP
ENSTTRP00000011738/1-581 MRGPSVALWL ILALRTALGG MEVRWCTISD PEQQKCSDMS KAFQQASIQP
bmy_02299T0/1-737 ---------- ---------- MEVRWCTISD PEQQKCSDMS KAFQQASIQP
ENSBTAP00000043824/1-739 MRGSSVALWL FVTLRTVLGG MEVRWCTISD PEQQKCSDMS KAFQQAGIQP
BACU003800/1-428 ---------- ---------- ---------- ---------- ----------
51 100
ENSP00000296350/1-738 SLLCVRGTSA DHCVQLIA-A QEADAITLDG GAIYEAGKEH GLKPVVGEVY
ENSTTRP00000011738/1-581 SLLCVQGTSA DHCIQLIT-A READAITLDG GAIYEAGKEH GLKPVVGEVY
bmy_02299T0/1-737 SLLCIQGTSA DHCLQLITQA READAITLDG GAIYEAGKEH GLKPVVGEVY
ENSBTAP00000043824/1-739 SVLCVQGTSA DHCVQLIT-A QEADAITLDG GAIYQAGKEH GLKPVVGEVY
BACU003800/1-428 ---------- ---------- ---------- ---------- ----------
101 150
ENSP00000296350/1-738 DQEVGTSYYA VAVVRRSSHV TIDTLKGVKS CHTGINRTVG WNVPVGYLVE
ENSTTRP00000011738/1-581 DQEVGTSYYA VAVVKRGSPV TINTLKGVTS CHTGINRTVG WNVPVGYLVE
bmy_02299T0/1-737 DQEVGTSYYA VAVVKRGSPV TINTLKGVTS CHTGINRTVG WNVPVGYLVE
ENSBTAP00000043824/1-739 DQEIGTSYYA VAVVKRGSQV TINTLKGMKS CHTGINRTVG WNVPVGYLVE
BACU003800/1-428 ---------- ---------- ---------- ---------- ----------
151 200
ENSP00000296350/1-738 SGRLSVMGCD VLKAVSDYFG GSCVPGAGET SYSESLCRLC RGDSSGEGVC
ENSTTRP00000011738/1-581 SGRLSVMGCD VLKAVSDYFG GSCVPGAGET SYSESLCRLC RGNTAGEGVC
bmy_02299T0/1-737 SGRLSVMGCD VLKAVSDYFG GSCVPGAGET SYSESLCRLC RGNTAGEGVC
ENSBTAP00000043824/1-739 SGRLSVMGCD VLRAVSDYFG GSCVPGAGET SYSESLCRLC RGDSTGEGVC
BACU003800/1-428 ---------- ---------- ---------- ---------- ----------
201 250
ENSP00000296350/1-738 DKSPLERYYD YSGAFRCLAE GAGDVAFVKH STVLENTDGK TLPSWGQALL
ENSTTRP00000011738/1-581 DKSPLERYYD YSGAFRCLAE GAGDVAFVKH STVLENTDGK TLPSWGQPLL
bmy_02299T0/1-737 DKSPLERYYD YSGAFRCLAE GAGDVAFVKH STVLENTDGK TLPSWGQTLL
ENSBTAP00000043824/1-739 DKSPLERYYD YSGAFRCLAE GAGDVAFVKH STVLENTDGK TLPSWGQALL
BACU003800/1-428 ---------- ---------- ---------- ---------- ----------
251 300
ENSP00000296350/1-738 SQDFELLCRD GSRADVTEWR QCHLARVPAH AVVVRADTDG GLIFRLLNEG
ENSTTRP00000011738/1-581 SQNFELLCRD GSRADVTEWR RCHLARVPAH AVVVRADTDG GLIFRLLNEG
bmy_02299T0/1-737 SQNFELLCRD GSRADVTEWR RCHLARVPAH AVVVRADTDG GLIFRLLNEG
ENSBTAP00000043824/1-739 SQDFELLCQD GTRADVTEWR QCHLARVPAH AVVVRADTDG GLIFRLLNEG
BACU003800/1-428 ---------- ---------- ---------- ---------- ----------
301 350
ENSP00000296350/1-738 QRLFSHEGSS FQMFSSEAYG QKDLLFKDST SELVPIATQT YEAWLGHEYL
ENSTTRP00000011738/1-581 QRLFSHEGSS FQMFSSEAYG QKNLLFKDST SELVPIATQT YEAWLGREYL
bmy_02299T0/1-737 QRLFNHEGSS FQMFSSEAYG QKNLLFKDST SELVPIATQT YEAWLGREYL
ENSBTAP00000043824/1-739 QRLFSHEGSS FHMFSSEAYG QKNLLFKDAT SELVPIATQT YEAWLGREYL
BACU003800/1-428 ---------- --MFSSEAYG QKNLLFKDST SELVPIATQT YEAWLGREYL
351 400
ENSP00000296350/1-738 HAMKGLLCDP NRLPPYLRWC VLSTPEIQKC GDMAVAFRRQ RLKPEIQCVS
ENSTTRP00000011738/1-581 HAMKGLLCDP NXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
bmy_02299T0/1-737 HAMKGLLCDP NRLPHYLRWC VLSTPEIQKC GDMAVAFSRQ RLKPEIQCVS
ENSBTAP00000043824/1-739 HAMKGLLCDP NRLPHYLRWC VLSTPEIQKC GDMAVAFSRQ RLKPEIQCVS
BACU003800/1-428 HAMKGLLCDP NRLPHYLRWC VLSTPEIQKC GDMAVAFSRQ RLKPEIQCVS
401 450
ENSP00000296350/1-738 AKSPQHCMER IQAEQVDAVT LSGEDIYTAG KTYGLVPAAG EHYAPEDSSN
ENSTTRP00000011738/1-581 XXXXXXXXXX XXAGQIDAVT LKGQDIYTAG KIYGLVPAAG EHYAPEDRSN
bmy_02299T0/1-737 AASPQRCMEQ IQAGQIDAVT LKGQDIYTAG KIYGLVPAAG EHYAPEDRSN
ENSBTAP00000043824/1-739 AESPQQCMER IQAGQIDAVT LKGEDIYTAG KTYGLVPAAG EHYTPEDRSN
BACU003800/1-428 AASPQRCMEQ IQAGQIDAVT LKGQDIYTAG KRYGLVPAAG EHYAPEDRSN
451 500
ENSP00000296350/1-738 SYYVVAVVRR DSSHAFTLDE LRGKRSCHAG FGSPAGWDVP VGALIQRGFI
ENSTTRP00000011738/1-581 SYFVVAVVKR NSS-AFTLDE LRGKRSCH-G FGSPAGWDIP VGALVQRGFI
bmy_02299T0/1-737 SYFVVAVVKR NSSYAFTLDE LRGKRSCHPG FGSPAGWDIP VGALVQRGFI
ENSBTAP00000043824/1-739 SYFVVAVVKR NSSYAFTLDE LRGKRSCHPG FGSPAGWDIP VGTLVQRGFI
BACU003800/1-428 SYFAVAVVKR NSSYAFTLDE LRGKRSCHPG LGSPAGWDIP VGALVQRDFI
501 550
ENSP00000296350/1-738 RPKDCDVLTA VSEFFNASCV PVNNPKNYPS SLCALCVGDE QGRNKCVGNS
ENSTTRP00000011738/1-581 RPRDCDVLTA VSEFFSASCV PVNNPKNYPS SLCALCVGDE QGHNKCVGNS
bmy_02299T0/1-737 RPRDCDVLTA VSEFFSASCV PVNNPKHYPS SLCALCVGDE QGRNKCVGNS
ENSBTAP00000043824/1-739 RPRDCDVLTA VSEFFSASCV PVNNPQNYPS SLCALCVGDE QGRNKCVGNS
BACU003800/1-428 RPRDCDVLTA VSEFFSASCV PVNNPKHYPS SLCTLCVGDE QGRNKCVGNS
551 600
ENSP00000296350/1-738 QERYYGYRGA FRCLVENAGD VAFVRHTTVF DNTNGHNSEP WAAELRSEDY
ENSTTRP00000011738/1-581 QERYYGYSGA FRCLAENAGD VAFVKHTTVF DNTN------ ----------
bmy_02299T0/1-737 QERYYGYGGA FRCLVENAGD VAFVKHTTVF DNTNGHNSEP WAAELMSEDY
ENSBTAP00000043824/1-739 QERYYGYSGA FRCLVENAGD VAFVKHTTVF DNTNGHSSEP WAAELMSEDY
BACU003800/1-428 QERYYGYSGA FRCLVENAGD VAFVKHTTVF DNTNGHNSEP WAAELMSEDY
601 650
ENSP00000296350/1-738 ELLCPNGARA EVSQFAACNL AQIPPHAVMV RPDTNIFTVY GLLDKAQDLF
ENSTTRP00000011738/1-581 ---------- ---------- ---------- ---------- ----------
bmy_02299T0/1-737 ELLCPNGARA EVTQFAACNL AQIPSHAVMV RPDTNIFTVY GLLDKAQDLF
ENSBTAP00000043824/1-739 ELLCPNGARA EVTQFAACNL AQIPSHAVMV RPDTNIFTVY GLLDKAQDLF
BACU003800/1-428 ELLCPNGARA EVTQFAACNL AQIPSHAVMV RPDTNIFTVY GLLDKAQDLF
651 700
ENSP00000296350/1-738 GDDHNKNGFK MFDSSNYHGQ DLLFKDATVR AVPVGEKTTY RGWLGLDYVA
ENSTTRP00000011738/1-581 ---------- ---------- ---------- ---------- ----------
bmy_02299T0/1-737 GDDHNKNGFK MFDSSNYHGQ BLLFKDATLR AVPVGEKTTY RDWLGPDYMA
ENSBTAP00000043824/1-739 GDDHNKNGFK MFDSSSYHGQ DLLFKDATIR VVPVGEKTTY RSWLGPDYVV
BACU003800/1-428 GDDHNKNGFK MFDSSNYHGQ DLLFKDATLR AVPVGEKTTY RDWLGPDYMA
701 750
ENSP00000296350/1-738 ALEGMSSQQC SGAA------ --------AP APGAPLLPLL LP-ALAARLL
ENSTTRP00000011738/1-581 ---------- ---------- ---------- ---------- ----------
bmy_02299T0/1-737 ALEGMLSQQC SGTGRARQAG SHPTEEEWAY SPGIFLSLSP KTLSELKGTL
ENSBTAP00000043824/1-739 ALEGMLSQQC SGTV------ --------TS ASRVSLLLLL LPLALTASLL
BACU003800/1-428 ALEGMLSQQC SGTA------ --------IV ASSVSLLLQL LLLALTASLL
751 800
ENSP00000296350/1-738 PPAL---
ENSTTRP00000011738/1-581 -------
bmy_02299T0/1-737 GLCRRSR
ENSBTAP00000043824/1-739 QPCL---
BACU003800/1-428 QPCL---