KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:55:22 2014 Check: 00 .. Name: ENSP00000296350/1-738 Len: 757 Check: 9754 Weight: 1.00 Name: ENSTTRP00000011738/1-581 Len: 757 Check: 2724 Weight: 1.00 Name: bmy_02299T0/1-737 Len: 757 Check: 5609 Weight: 1.00 Name: ENSBTAP00000043824/1-739 Len: 757 Check: 1517 Weight: 1.00 Name: BACU003800/1-428 Len: 757 Check: 4268 Weight: 1.00 // 1 50 ENSP00000296350/1-738 MRGPSGALWL LLALRTVLGG MEVRWCATSD PEQHKCGNMS EAFREAGIQP ENSTTRP00000011738/1-581 MRGPSVALWL ILALRTALGG MEVRWCTISD PEQQKCSDMS KAFQQASIQP bmy_02299T0/1-737 ---------- ---------- MEVRWCTISD PEQQKCSDMS KAFQQASIQP ENSBTAP00000043824/1-739 MRGSSVALWL FVTLRTVLGG MEVRWCTISD PEQQKCSDMS KAFQQAGIQP BACU003800/1-428 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000296350/1-738 SLLCVRGTSA DHCVQLIA-A QEADAITLDG GAIYEAGKEH GLKPVVGEVY ENSTTRP00000011738/1-581 SLLCVQGTSA DHCIQLIT-A READAITLDG GAIYEAGKEH GLKPVVGEVY bmy_02299T0/1-737 SLLCIQGTSA DHCLQLITQA READAITLDG GAIYEAGKEH GLKPVVGEVY ENSBTAP00000043824/1-739 SVLCVQGTSA DHCVQLIT-A QEADAITLDG GAIYQAGKEH GLKPVVGEVY BACU003800/1-428 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000296350/1-738 DQEVGTSYYA VAVVRRSSHV TIDTLKGVKS CHTGINRTVG WNVPVGYLVE ENSTTRP00000011738/1-581 DQEVGTSYYA VAVVKRGSPV TINTLKGVTS CHTGINRTVG WNVPVGYLVE bmy_02299T0/1-737 DQEVGTSYYA VAVVKRGSPV TINTLKGVTS CHTGINRTVG WNVPVGYLVE ENSBTAP00000043824/1-739 DQEIGTSYYA VAVVKRGSQV TINTLKGMKS CHTGINRTVG WNVPVGYLVE BACU003800/1-428 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000296350/1-738 SGRLSVMGCD VLKAVSDYFG GSCVPGAGET SYSESLCRLC RGDSSGEGVC ENSTTRP00000011738/1-581 SGRLSVMGCD VLKAVSDYFG GSCVPGAGET SYSESLCRLC RGNTAGEGVC bmy_02299T0/1-737 SGRLSVMGCD VLKAVSDYFG GSCVPGAGET SYSESLCRLC RGNTAGEGVC ENSBTAP00000043824/1-739 SGRLSVMGCD VLRAVSDYFG GSCVPGAGET SYSESLCRLC RGDSTGEGVC BACU003800/1-428 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000296350/1-738 DKSPLERYYD YSGAFRCLAE GAGDVAFVKH STVLENTDGK TLPSWGQALL ENSTTRP00000011738/1-581 DKSPLERYYD YSGAFRCLAE GAGDVAFVKH STVLENTDGK TLPSWGQPLL bmy_02299T0/1-737 DKSPLERYYD YSGAFRCLAE GAGDVAFVKH STVLENTDGK TLPSWGQTLL ENSBTAP00000043824/1-739 DKSPLERYYD YSGAFRCLAE GAGDVAFVKH STVLENTDGK TLPSWGQALL BACU003800/1-428 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000296350/1-738 SQDFELLCRD GSRADVTEWR QCHLARVPAH AVVVRADTDG GLIFRLLNEG ENSTTRP00000011738/1-581 SQNFELLCRD GSRADVTEWR RCHLARVPAH AVVVRADTDG GLIFRLLNEG bmy_02299T0/1-737 SQNFELLCRD GSRADVTEWR RCHLARVPAH AVVVRADTDG GLIFRLLNEG ENSBTAP00000043824/1-739 SQDFELLCQD GTRADVTEWR QCHLARVPAH AVVVRADTDG GLIFRLLNEG BACU003800/1-428 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000296350/1-738 QRLFSHEGSS FQMFSSEAYG QKDLLFKDST SELVPIATQT YEAWLGHEYL ENSTTRP00000011738/1-581 QRLFSHEGSS FQMFSSEAYG QKNLLFKDST SELVPIATQT YEAWLGREYL bmy_02299T0/1-737 QRLFNHEGSS FQMFSSEAYG QKNLLFKDST SELVPIATQT YEAWLGREYL ENSBTAP00000043824/1-739 QRLFSHEGSS FHMFSSEAYG QKNLLFKDAT SELVPIATQT YEAWLGREYL BACU003800/1-428 ---------- --MFSSEAYG QKNLLFKDST SELVPIATQT YEAWLGREYL 351 400 ENSP00000296350/1-738 HAMKGLLCDP NRLPPYLRWC VLSTPEIQKC GDMAVAFRRQ RLKPEIQCVS ENSTTRP00000011738/1-581 HAMKGLLCDP NXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_02299T0/1-737 HAMKGLLCDP NRLPHYLRWC VLSTPEIQKC GDMAVAFSRQ RLKPEIQCVS ENSBTAP00000043824/1-739 HAMKGLLCDP NRLPHYLRWC VLSTPEIQKC GDMAVAFSRQ RLKPEIQCVS BACU003800/1-428 HAMKGLLCDP NRLPHYLRWC VLSTPEIQKC GDMAVAFSRQ RLKPEIQCVS 401 450 ENSP00000296350/1-738 AKSPQHCMER IQAEQVDAVT LSGEDIYTAG KTYGLVPAAG EHYAPEDSSN ENSTTRP00000011738/1-581 XXXXXXXXXX XXAGQIDAVT LKGQDIYTAG KIYGLVPAAG EHYAPEDRSN bmy_02299T0/1-737 AASPQRCMEQ IQAGQIDAVT LKGQDIYTAG KIYGLVPAAG EHYAPEDRSN ENSBTAP00000043824/1-739 AESPQQCMER IQAGQIDAVT LKGEDIYTAG KTYGLVPAAG EHYTPEDRSN BACU003800/1-428 AASPQRCMEQ IQAGQIDAVT LKGQDIYTAG KRYGLVPAAG EHYAPEDRSN 451 500 ENSP00000296350/1-738 SYYVVAVVRR DSSHAFTLDE LRGKRSCHAG FGSPAGWDVP VGALIQRGFI ENSTTRP00000011738/1-581 SYFVVAVVKR NSS-AFTLDE LRGKRSCH-G FGSPAGWDIP VGALVQRGFI bmy_02299T0/1-737 SYFVVAVVKR NSSYAFTLDE LRGKRSCHPG FGSPAGWDIP VGALVQRGFI ENSBTAP00000043824/1-739 SYFVVAVVKR NSSYAFTLDE LRGKRSCHPG FGSPAGWDIP VGTLVQRGFI BACU003800/1-428 SYFAVAVVKR NSSYAFTLDE LRGKRSCHPG LGSPAGWDIP VGALVQRDFI 501 550 ENSP00000296350/1-738 RPKDCDVLTA VSEFFNASCV PVNNPKNYPS SLCALCVGDE QGRNKCVGNS ENSTTRP00000011738/1-581 RPRDCDVLTA VSEFFSASCV PVNNPKNYPS SLCALCVGDE QGHNKCVGNS bmy_02299T0/1-737 RPRDCDVLTA VSEFFSASCV PVNNPKHYPS SLCALCVGDE QGRNKCVGNS ENSBTAP00000043824/1-739 RPRDCDVLTA VSEFFSASCV PVNNPQNYPS SLCALCVGDE QGRNKCVGNS BACU003800/1-428 RPRDCDVLTA VSEFFSASCV PVNNPKHYPS SLCTLCVGDE QGRNKCVGNS 551 600 ENSP00000296350/1-738 QERYYGYRGA FRCLVENAGD VAFVRHTTVF DNTNGHNSEP WAAELRSEDY ENSTTRP00000011738/1-581 QERYYGYSGA FRCLAENAGD VAFVKHTTVF DNTN------ ---------- bmy_02299T0/1-737 QERYYGYGGA FRCLVENAGD VAFVKHTTVF DNTNGHNSEP WAAELMSEDY ENSBTAP00000043824/1-739 QERYYGYSGA FRCLVENAGD VAFVKHTTVF DNTNGHSSEP WAAELMSEDY BACU003800/1-428 QERYYGYSGA FRCLVENAGD VAFVKHTTVF DNTNGHNSEP WAAELMSEDY 601 650 ENSP00000296350/1-738 ELLCPNGARA EVSQFAACNL AQIPPHAVMV RPDTNIFTVY GLLDKAQDLF ENSTTRP00000011738/1-581 ---------- ---------- ---------- ---------- ---------- bmy_02299T0/1-737 ELLCPNGARA EVTQFAACNL AQIPSHAVMV RPDTNIFTVY GLLDKAQDLF ENSBTAP00000043824/1-739 ELLCPNGARA EVTQFAACNL AQIPSHAVMV RPDTNIFTVY GLLDKAQDLF BACU003800/1-428 ELLCPNGARA EVTQFAACNL AQIPSHAVMV RPDTNIFTVY GLLDKAQDLF 651 700 ENSP00000296350/1-738 GDDHNKNGFK MFDSSNYHGQ DLLFKDATVR AVPVGEKTTY RGWLGLDYVA ENSTTRP00000011738/1-581 ---------- ---------- ---------- ---------- ---------- bmy_02299T0/1-737 GDDHNKNGFK MFDSSNYHGQ BLLFKDATLR AVPVGEKTTY RDWLGPDYMA ENSBTAP00000043824/1-739 GDDHNKNGFK MFDSSSYHGQ DLLFKDATIR VVPVGEKTTY RSWLGPDYVV BACU003800/1-428 GDDHNKNGFK MFDSSNYHGQ DLLFKDATLR AVPVGEKTTY RDWLGPDYMA 701 750 ENSP00000296350/1-738 ALEGMSSQQC SGAA------ --------AP APGAPLLPLL LP-ALAARLL ENSTTRP00000011738/1-581 ---------- ---------- ---------- ---------- ---------- bmy_02299T0/1-737 ALEGMLSQQC SGTGRARQAG SHPTEEEWAY SPGIFLSLSP KTLSELKGTL ENSBTAP00000043824/1-739 ALEGMLSQQC SGTV------ --------TS ASRVSLLLLL LPLALTASLL BACU003800/1-428 ALEGMLSQQC SGTA------ --------IV ASSVSLLLQL LLLALTASLL 751 800 ENSP00000296350/1-738 PPAL--- ENSTTRP00000011738/1-581 ------- bmy_02299T0/1-737 GLCRRSR ENSBTAP00000043824/1-739 QPCL--- BACU003800/1-428 QPCL---