KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:55:22 2014 Check: 00 .. Name: ENSTTRP00000012801/1-953 Len: 1001 Check: 6594 Weight: 1.00 Name: ENSP00000403802/1-956 Len: 1001 Check: 1901 Weight: 1.00 Name: ENSBTAP00000043834/1-951 Len: 1001 Check: 381 Weight: 1.00 Name: bmy_02845T0/1-979 Len: 1001 Check: 6881 Weight: 1.00 Name: BACU017546/1-924 Len: 1001 Check: 8792 Weight: 1.00 // 1 50 ENSTTRP00000012801/1-953 ---------- ---------- ---------- ---------- -----MEAGS ENSP00000403802/1-956 ---------- ---------- ---------- ---------- -----MEAGG ENSBTAP00000043834/1-951 ---------- ---------- ---------- ---------- -----MEAGG bmy_02845T0/1-979 RILGEPLTER FEAEESALLG VLHQSVERGP FSLQSPGILE KLQVTMEAGI BACU017546/1-924 ---------- ---------- ---------- ---------- -----MEAGI 51 100 ENSTTRP00000012801/1-953 LPLELWRMIL AYLPLPDLGR CSLVCRAWYE LILSLDRTRW RQLYLGYTEC ENSP00000403802/1-956 LPLELWRMIL AYLHLPDLGR CSLVCRAWYE LILSLDSTRW RQLCLGCTEC ENSBTAP00000043834/1-951 LPLELWRMIL AYLPLPDLGR CSLVCRAWRE LILSLDRTRW RQLYLGCAEC bmy_02845T0/1-979 LPLELWRMIL AYLPLPDLGR CSLVCRAWYE LILSLDRTRW RQLYLGYTEC BACU017546/1-924 LPLELWRMIL AYLPLPDLGR CSLVCRAWYE LILSLDRTRW RQLYLGYTEC 101 150 ENSTTRP00000012801/1-953 RHPNWPNQPD VEPESWREAF KQHYLASKMW TKNAAILETS VCFSLFRRRR ENSP00000403802/1-956 RHPNWPNQPD VEPESWREAF KQHYLASKTW TKNALDLESS ICFSLFRRRR ENSBTAP00000043834/1-951 RHPNWPNQPD VEPESWREAF KQHYLASKTW TKNAAILETS VCFSLFRRRR bmy_02845T0/1-979 RHPNWPNQPD VEPESWREAF KQHYLASKMW TKNAAILETS VCFSLFRRRR BACU017546/1-924 RHPNWPNQPD VEPESWREAF KQHYLASKMW TKNAAILETS VCFSLFRRRR 151 200 ENSTTRP00000012801/1-953 TRRTLSVGPG HEFHSLGSAL AMSSLFDRIL LFPGLHEEQG EIILKVPVEI ENSP00000403802/1-956 ERRTLSVGPG REFDSLGSAL AMASLYDRIV LFPGVYEEQG EIILKVPVEI ENSBTAP00000043834/1-951 MRRTLSVGPG HEFHSLGSAL AMSSLFDRIL LFPGLHEEQG EIILKVPVEI bmy_02845T0/1-979 TRRTLSVGPG HEFHSLGSAL AMSSLFDRIL LFPGLHEEQG EIILKVPVEI BACU017546/1-924 TRRTLSVGPG HEFHSLGSAL AMSSLFDRIL LFPGLHEEQG EIILKVPVEI 201 250 ENSTTRP00000012801/1-953 VGHGKLGEVA LLASIDQQCS TTRLCNLVFM PAWFSPFMFK XXXXXXXXXX ENSP00000403802/1-956 VGQGKLGEVA LLASIDQHCS TTRLCNLVFT PAWFSPIMYK TTSGHVQFDN ENSBTAP00000043834/1-951 VGHGKLGEVA LLASIDQQCS TTRLCNLVFM PAWFSPFMFK TTSGHVQFDN bmy_02845T0/1-979 VGHGKLGEVA LLASIDQQCS TTRLCNLVFM PAWFSPFMFK TTSGHVQFDN BACU017546/1-924 VGHGKLGEVA LLASIDQQCS TTRLCNLVFM PAWFSPFMFK TTSGHVQFDN 251 300 ENSTTRP00000012801/1-953 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000403802/1-956 CNFENGHIQV HGPGTCQVKF CTFKNTHIFL HNVPLCVLEN CEFVGSENNS ENSBTAP00000043834/1-951 CNFENGHIQV HGPGTCQVKF CSFKNTHVFL HNVPLCVLEN CEFVGSENNS bmy_02845T0/1-979 CNFENGHIQV HGPGTCQVKF CTFKNTHVFL HNVPLCVLEN CEFVGSENNS BACU017546/1-924 CNFENGHIQV HGPGTCQVKF CTFKNTHVFL HNVPLCVLEN CEFVGSENNS 301 350 ENSTTRP00000012801/1-953 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000403802/1-956 VTVEGHPSAD KNWAYKYLLG LIKSSPTFLP TEDSDFLMSL DLESRDQAWS ENSBTAP00000043834/1-951 VTVEGHPSSE NNWAYTHLLG LIRSSPGVLP TEDSDSLMSL DLESRDQAWS bmy_02845T0/1-979 VTVEGHPSSE NNWAYTHLLG LIRSSPGVLP TEDSDSLMSL DLESRDQAWS BACU017546/1-924 VTVEGHPSSE NNWAYTHLLG LIRSSPGVLP TEDSDSLMSL DLESRDQAWS 351 400 ENSTTRP00000012801/1-953 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000403802/1-956 PKTCDIVIEG SQSPTSPASS SPKPGSKAGS QEAEVGSDGE RVAQTPDSSD ENSBTAP00000043834/1-951 PRTCGIVIEG SQSPTSPTTG SP----RAGS QDAEVGSNGE RVARTPDSSD bmy_02845T0/1-979 PRTCGIVIEG SQSPTSPATG SP----KAGS QEAEVGSDGE RVARTPDSSD BACU017546/1-924 PRTCGIVIEG SQSPTSPATG SP----KAGS QEAEVGSDGE RVARTPDSSD 401 450 ENSTTRP00000012801/1-953 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000403802/1-956 GGLSPSGEDE DEDQLMYRLS YQVQGPRPVL GGSFLGPPLP GASIQLPSCL ENSBTAP00000043834/1-951 GGLSPSGEDE DEDQLTYRLS YQVQGPRPVL GGSFLGPPLP GASIQLPSCL bmy_02845T0/1-979 GGLSPSGEDE DEDQLTYRLS YQVQGPRPVL GGSFLGPPLP GASIQLPSCL BACU017546/1-924 GGLSPSGEDE DEDQLTYRLS YQVQGPRPVL GGSFLGPPLP GASIQLPSCL 451 500 ENSTTRP00000012801/1-953 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000403802/1-956 VLNSLQQELQ KDKEAMALAN SVQGCLIRKC LFRDGKGGVF VCSHGRAKME ENSBTAP00000043834/1-951 VLNSLQQELQ KDREAMALAS SVQGCLIRKC LFRDGKGGVF VCSYGRAKME bmy_02845T0/1-979 VLNSLHQELQ KDREAMALAS SVQGCLIRKC LFRDGKGGVF VCSYGRAKME BACU017546/1-924 VLNSLHQELQ KDREAMALAS SVQGCLIRKC LFRDGKGGVF VCSYGRAKME 501 550 ENSTTRP00000012801/1-953 XXXXXXXXXX XXXXXXXXII MLRNHIHHCR ASGIFLRLEG GGLIAGNNIY ENSP00000403802/1-956 GNIFRNLTYA VRCIHNSKII MLRNDIYRCR ASGIFLRLEG GGLIAGNNIY ENSBTAP00000043834/1-951 GNIFRNLTYA VRCIHNSKII MLRNHIHHCR ASGIFLRLEG GGLIAGNNIC bmy_02845T0/1-979 GNIFRNLTYA VRCIHNSKII MLRNHIHHCR ASGIFLRLEG GGLIAGNNIY BACU017546/1-924 GNIFRNLTYA VRCIHNSKII MLRNHIHHCR ASGIFLRLEG GGLIAGNNIY 551 600 ENSTTRP00000012801/1-953 DNAEAGVDIR KKSNPL--CN QIHHGLRSGI VVLGNGKGII RNNQIFSNKE ENSP00000403802/1-956 HNAEAGVDIR KKSNPLILCN QIHHGLRSGI VVLGNGKGII RNNQIFSNKE ENSBTAP00000043834/1-951 HNAEAGVDIR KKSNPLILCN QIHHGLRSGI VVLGNGKGII RNNQIFSNKE bmy_02845T0/1-979 DNAEAGVDIR KKSNPLILCN QIHHGLRSGI VVLGNGKGII RNNQIFSNKE BACU017546/1-924 DNAEAGVDIR KKSNPLILCN QIHHGLRSGI VVLGNGKGII RNNQIFSNKE 601 650 ENSTTRP00000012801/1-953 AGIYILYHGN PVVSRNHIFK GSAAGIAVNE NGRGLITENV IRENQWGGVD ENSP00000403802/1-956 AGIYILYHGN PVVSGNHIFK GRAAGIAVNE NGKGLITENV IRENQWGGVD ENSBTAP00000043834/1-951 AGIYILYHGN PVVSRNHIFK GHAAGIAVNE NGRGLITENV IRENQWGGVD bmy_02845T0/1-979 AGIYILYHGN PVVSRNHIFK GSAAGIAVNE NGRGLITENV IRENQWGGVD BACU017546/1-924 AGIYILYHGN PVVSRNHIFK GSAAGIAVNE NGRGLITENV IRENQWGGVD 651 700 ENSTTRP00000012801/1-953 IRRGGVPILR SNLICFGYSD GVVVGDEGKG LLEGNTIYAN KGCGVWMMSS ENSP00000403802/1-956 IRRGGIPVLR SNLICFGYSD GVVVGDEGKG LIEGNTIYAN KGCGVWMMSS ENSBTAP00000043834/1-951 IRRGGVPILR SNLICFGYSD GVVVGDEGKG LLEGNTIYAN KGCGVWMMAS bmy_02845T0/1-979 IRRGGVPILR SNLICFGYSD GVVVGDEGKG LLEGNTIYAN KGCGVWMMSS BACU017546/1-924 IRRGGVPILR SNLICFGYSD GVVVGDEGKG LLEGNTIYAN KGCGVWMMSS 701 750 ENSTTRP00000012801/1-953 SLPHITSNHV SYNGVYGVAV FSQKDGSGES PGGHVAQENF GEDGDATLWE ENSP00000403802/1-956 SLPHVTSNHV SYNGLYGVAV FSQKDGSSEL PRGHRAQENF SEDGDAILWE ENSBTAP00000043834/1-951 SLPHVTSNHV SYNGLYGVAV FSQKDGSGEF PGGHGAQENF SEDGDAILWE bmy_02845T0/1-979 SLPHVTSNHV SYNGLYGVAV FSQKDGSGES PGGHGAQENF GEDGDATLWE BACU017546/1-924 SLPHVTSNHV SYNGLYGVAV FSQKDGSGES PGGHGAQENF GEDGDATLWE 751 800 ENSTTRP00000012801/1-953 TELEKDDDLL RRPIATALVE SNTVNHNGAS GLYVQSSELL HVITNVIHAN ENSP00000403802/1-956 TELEKEDDPL RRPITIALVE SNSINHNGAS GLYVQSSEAL HVITNVIHAN ENSBTAP00000043834/1-951 TELEKDDDPL RRPITIALVE SNSVNHNGAS GLYIQSSEAL HIVTNVIHAN bmy_02845T0/1-979 TELEKDDDLL RRPITAALVE SNTVNHNGAS GLYVQSSEVL HVITNVIHAN BACU017546/1-924 TELEKDDDLL RRPITAALVE SNTVNHNGAS GLYVQSSEVL HVITNVIHAN 801 850 ENSTTRP00000012801/1-953 GDRGITVAQS SQLTRVANNS ISCNHQSGVK VEAQCKVEFR GNGIYDNRGH ENSP00000403802/1-956 GDRGITVAQS SQPTRVANNS ISCNRQSGVK VEAQCKVELR GNGIYDNRGH ENSBTAP00000043834/1-951 RVRGITVAQS SQLTRVANNS ISCNRQSGVK IEAQCKVELR GNGIYDNRGH bmy_02845T0/1-979 GDRGITVAQS SQLTRVTNNS ISCNHQSGVK VEAQCKVEFR GNGIYDNRGH BACU017546/1-924 GDRGITVAQS SQLTRVANNS ISCNHQSGVK VEAQCKVEFR GNGIYDNRGH 851 900 ENSTTRP00000012801/1-953 GIITKGDST- VIENDIIGNR GSGLQLLPTS DTKVIKNRIH SFRAYGIAVQ ENSP00000403802/1-956 GIITKGDSTI VIENDIIGNR GSGLQLLPRS DTKVIKNRIH SFRAYGIAVR ENSBTAP00000043834/1-951 GVITKGDST- VMENDIIGNR GSGLQLLPMS DTKVIKNRIH SFRASGIAVQ bmy_02845T0/1-979 GIITKGDST- VIENDIIGNR GSGLQLLPTS DTK------- ---------- BACU017546/1-924 GIITKGDST- VIENDIIGNR GSGLQLLPTS DTKVIKNRIH SFRAYGIAVQ 901 950 ENSTTRP00000012801/1-953 GRAKALLQEN TVFQGKTNKT IFQQISNNQE CIMQNNKFLV FKKKSDTWCL ENSP00000403802/1-956 GRAKALVQEN IIFQGKTSKT IFQQISNNRE CIMQNNKFLV FKKKSDTWRL ENSBTAP00000043834/1-951 GHAKALVQEN TIFQGRTNKT IFQQSSNNQE CIIQNNRFLV FKNRSDTWRL bmy_02845T0/1-979 GRAKALLQEN TVFQGKTNKT IFQQISNNQE CIMQNNKFLV FKKKSDTWRL BACU017546/1-924 GRAKALLQEN TVFQGKTNKT IFQQISNNQE CIMQNNKFLV FKK------- 951 1000 ENSTTRP00000012801/1-953 ANPPARPHLE NSLRGPSAAH SGQKVTAMAT RITAHVEGGY HSKRSIFCTI ENSP00000403802/1-956 VNPPARPHLE NSLRRPSAAH NGQKVTAMAT RITARVEGGY HSNRSVFCTI ENSBTAP00000043834/1-951 ANPPARPHLE NSLRGPSAAH GGQKVTAMAT RITAHVEGGY HSKRSIFCTI bmy_02845T0/1-979 ANPPARPHLE NSLRGPSAAH SGQKVTAMAT RITAHVEGGY HSKRSIFCTI BACU017546/1-924 ---------- ---------- NGQKVTAMAT RITAHVEGGY HSKRSIFCTI 1001 1050 ENSTTRP00000012801/1-953 L ENSP00000403802/1-956 L ENSBTAP00000043834/1-951 L bmy_02845T0/1-979 L BACU017546/1-924 L