KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:55:23 2014 Check: 00 .. Name: bmy_07201T0/1-488 Len: 660 Check: 6275 Weight: 1.00 Name: ENSTTRP00000011292/1-579 Len: 660 Check: 9259 Weight: 1.00 Name: ENSP00000368872/1-579 Len: 660 Check: 3339 Weight: 1.00 Name: BACU005631/1-594 Len: 660 Check: 3519 Weight: 1.00 Name: ENSBTAP00000043841/1-579 Len: 660 Check: 4411 Weight: 1.00 // 1 50 bmy_07201T0/1-488 ---MPLNGDP DVSSP----F FGAQPTYPY- ---------- ---------Q ENSTTRP00000011292/1-579 MRRPPGNGET ASEGIRGWGL WGRHEPRRLG CAGPDRCGQA LLQIGVNMMA ENSP00000368872/1-579 MRRPPGNGEA ASEGPGGWGL WGVQESRRLC CAGHDRCKQA LLQIGINMMA BACU005631/1-594 ---------- ---------M WEQELP---- --GPDRCGQA LLQIGVNMMA ENSBTAP00000043841/1-579 MRRPPGNGET ASEGPGSWSL WGRFEPKRLG CAGPDRCRQA LLRIGVNMMA 51 100 bmy_07201T0/1-488 LP-----PAL TPPGVRLQL- ------PWMA DCAENPRVPV SSRLKEGPAA ENSTTRP00000011292/1-579 LPGGRHLDSI PLPGQRXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000368872/1-579 LPGGRHLDSV TLPGQRLHLM QVDSVQRWME DLKLMTECEC MCVLQAKPIS BACU005631/1-594 LPGGRHLDSV PLPGQRLHLM QVDSVQRWME DLKLMTECEC MCVLQAKPIS ENSBTAP00000043841/1-579 LPGGRHLDSI PLPGQRPHLM QVDSVQRWME DLKLMTECEC MCVLQAKPIS 101 150 bmy_07201T0/1-488 FGPVLHSKPE F--GEGSLSP KCSSEQR--- LSSAGPRVPM RCATAPPGGQ ENSTTRP00000011292/1-579 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000368872/1-579 LEEDAQGDLI LAGGPGPGDP LQLLLKRGWV ISTELRRIGQ KLAQDRWARV BACU005631/1-594 LEEDAQGDLI LAGGSGPGDP LQLLLKRGWV ISTELRRIGQ KLAQDRWARV ENSBTAP00000043841/1-579 LEEDAQGDLI LAGGPGPGDP LQLLLKRGWV ISTELRRIGQ KLAQDRWARV 151 200 bmy_07201T0/1-488 EQQLQPCHAA CVGEKGGCAA GKPGLLRALD RLQRFLFEKA KEVEWGLDVF ENSTTRP00000011292/1-579 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XIEKLLMEKC SELSAVTEXX ENSP00000368872/1-579 HSMSVRLTCH ARSMVSEYSA VSRNSLKEMG EIEKLLMEKC SELSAVTERC BACU005631/1-594 HSMSVRLTCH ARSMVSEYSA ASRSSSQEMG QIEKLLMEKC SELSAVTERC ENSBTAP00000043841/1-579 HSMSVRLTCH ARSMVSEYSA VSRNSSQEMS QIEKLLMEKC SELSVVTERC 201 250 bmy_07201T0/1-488 IWEEDSVIL- ---------L KALFTFYGF- --LRLST--- ---------- ENSTTRP00000011292/1-579 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXX--- ---------- ENSP00000368872/1-579 LQVENEHVLK SMKACVSETL SMLGQHFGQL LELALTR--- ---------- BACU005631/1-594 LQVENEHILK SMKACVSETL STLGQHFGQL LELALTREVQ VVVQARASVP ENSBTAP00000043841/1-579 LQVENEHVLK SMKACVSETL STLGEHFGQL LELALTR--- ---------- 251 300 bmy_07201T0/1-488 ---------- ---------- -------GLP ALPPLLRTNT SFY------- ENSTTRP00000011292/1-579 ---------- ---------- -------XXX ALVRKIDASD NIYTTESTTG ENSP00000368872/1-579 ---------- ---------- -------EVQ ALVRKIDASD NIYTTESTTG BACU005631/1-594 NGTIKSQRDP VEHGAEVGEE IEGVMSEGIE ALVRKIDASD NIYTTESTTG ENSBTAP00000043841/1-579 ---------- ---------- -------EVQ ALVRKIDASD NIYTTESTTG 301 350 bmy_07201T0/1-488 ---------- ---------- ---------- -KAF------ ---------- ENSTTRP00000011292/1-579 NLFSLTQEGA PLCRIIAKEG GVVALFKVCR QDSFRCLYPQ ALRTLASICC ENSP00000368872/1-579 NLFSLTQEGA PLCRIIAKEG GVVALFKVCR QDSFRCLYPQ ALRTLASICC BACU005631/1-594 NLFSLTQEGA PLCRIIAKEG GVVALFKVCR QDSFRCLYPQ ALRTLASICC ENSBTAP00000043841/1-579 NLFSLTQEGA PLCRIIAKEG GVVALFKICR QDTLRCLYPQ ALRTLASICC 351 400 bmy_07201T0/1-488 ---GVQVDRK VDGVLCLADI LTDDSHSEAT RAEAAAVVAQ VTSPHLPFTQ ENSTTRP00000011292/1-579 VEEGVHQLEK VDGVLCLADI LTDDSHSEAT RAEAAAVVAQ VTSPHLPFTQ ENSP00000368872/1-579 VEEGVHQLEK VDGVLCLADI LTDNSHSEAT RAEAAAVVAQ VTSPHLPVTQ BACU005631/1-594 VEEGVHQLEK VDGVLCLADI LTDDSHSEAT RAEAAAVVAQ VTSPHLPFTQ ENSBTAP00000043841/1-579 VEEGVHQLEK VDGVLCLADI LTDDSHSEAT RAEAAAVVAQ VTSPHLPFTQ 401 450 bmy_07201T0/1-488 HLSSFLESME EIVTALV--- -------IFL LASAALANIT FFDTMACEML ENSTTRP00000011292/1-579 HLSSFLESME EIVTALVKLC QEASSGEVFL LASAALANIT FFDTMACEML ENSP00000368872/1-579 HLSSFLESME EIVTALVKLC QEASSGEVFL LASAALANIT FFDTMACEML BACU005631/1-594 HLSSFLESME EIVTALVKLC QEASSGEVFL LASAALANIT FFDTMACEML ENSBTAP00000043841/1-579 HLSSFLESME EIVTALVKLC QEASSGEVFL LASAALANIT FFDTMACEML 451 500 bmy_07201T0/1-488 LQLKAIRVLL EACSDKQRVD TPYTRDQIVT ILANMSVLEQ CASDIIQENG ENSTTRP00000011292/1-579 LQLKAIRVLL EACSDKQRVD TPYTRDQIVT ILANMSVLEQ CASDIIQENG ENSP00000368872/1-579 LQLNAIRVLL EACSDKQRVD TPYTRDQIVT ILANMSVLEQ CASDIIQENG BACU005631/1-594 LQLKAIRVLL EACSDKQRVD TPYTRDQIVT ILANMSVLEQ CASDIIQENG ENSBTAP00000043841/1-579 LQLNAIRVLL EACSDKQRVD TPYTRDQIVT ILANMSVLEQ CASDIIQENG 501 550 bmy_07201T0/1-488 VQLIMGLLSE KPRSGTPAEV AACERVQQKA AVTLARLSRD PDVAREAVRL ENSTTRP00000011292/1-579 VQLIMGLLSE KPRSGTPAEV AACERVQQKA AVTLARLSRD PDVAREAVRL ENSP00000368872/1-579 VQLIMGMLSE KPRSGTPAEV AACERVQQKA AVTLARLSRD PDVAREAVRL BACU005631/1-594 VQLIMGLLSE KPRSGTPAEV AACERVQQKA AVTLARLSRD PDVAREAVRL ENSBTAP00000043841/1-579 VQLIMGMLSE KPRSGTPAEV AACERVQQKA AVTLARLSRD PDVAREAVRL 551 600 bmy_07201T0/1-488 SC--KWCWLC QGRRGGPGLG A------AAL RRLAGVCPEG LQDSDFQQLV ENSTTRP00000011292/1-579 SCMSRLIELC RSPSKRNSSD AVLVACLAAL RRLAGVCPEG LQDSDFQQLV ENSP00000368872/1-579 SCMSRLIELC RSPSERNSSD AVLVACLAAL RRLAGVCPEG LQDSDFQQLV BACU005631/1-594 SCMSRLIELC RSPSERNSSD AVLVACLAAL RRLAGVCPEG LQDSDFQQLV ENSBTAP00000043841/1-579 SCMSRLIELC RSPSERNSSD AVLVACLAAL RRLAGVCPEG LQDSDFQQLV 601 650 bmy_07201T0/1-488 QPRLVDSFLL CSNMEESFRA KHYSNIIRQF VVLGSLFCFY FLTSLQMLKC ENSTTRP00000011292/1-579 QPRLVDSFLL CSNMEESFV- ---------- ---------- ---------- ENSP00000368872/1-579 QPRLVDSFLL CSNMEESFV- ---------- ---------- ---------- BACU005631/1-594 QPRLVDSFLL CSNMEESFV- ---------- ---------- ---------- ENSBTAP00000043841/1-579 QPRLVDSFLL CSNMEESFV- ---------- ---------- ---------- 651 700 bmy_07201T0/1-488 IMANMTDCHG ENSTTRP00000011292/1-579 ---------- ENSP00000368872/1-579 ---------- BACU005631/1-594 ---------- ENSBTAP00000043841/1-579 ----------