KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:55:25 2014 Check: 00 .. Name: ENSP00000263688/1-1254 Len: 1449 Check: 8762 Weight: 1.00 Name: ENSBTAP00000043864/1-1252 Len: 1449 Check: 5239 Weight: 1.00 Name: bmy_11606T0/1-1226 Len: 1449 Check: 2194 Weight: 1.00 Name: ENSTTRP00000016039/1-1366 Len: 1449 Check: 7859 Weight: 1.00 // 1 50 ENSP00000263688/1-1254 MKKHRRALAL VSCLFLC--- ---------- ---------- ---------- ENSBTAP00000043864/1-1252 -SKFRRLRVL KSCYVLC--- ---------- ---------- ---------- bmy_11606T0/1-1226 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016039/1-1366 MRGFLAHLFP LANQHLAWAG PLTPGKRLVL FPQRHSRPCH KLWSKKENCV 51 100 ENSP00000263688/1-1254 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000043864/1-1252 ---------- ---------- ---------- ---------- ---------- bmy_11606T0/1-1226 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016039/1-1366 TIPKLASLAV RSETTDLFIE TVTGKDRERE RRVPERKLQL PRALARTRRA 101 150 ENSP00000263688/1-1254 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000043864/1-1252 ---------- ---------- ---------- ---------- ---------- bmy_11606T0/1-1226 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016039/1-1366 LGGRRARTSW RPRQQRRSPE ASCEAHPSAP LWAPGRERPA REPLRRRSSS 151 200 ENSP00000263688/1-1254 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000043864/1-1252 ---------- ---------- ---------- ---------- ---------- bmy_11606T0/1-1226 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016039/1-1366 AAALRTLGLI LVLLFRLLHL GLGSSSCRED VPPSGRGKKE EKMKKYRXXX 201 250 ENSP00000263688/1-1254 ---------S LVWLPSWRVC CKESSSASAS SYYSQDDNCA LENEDVQFQK ENSBTAP00000043864/1-1252 ---------S FIRLPSWHVC CKESS--SAS SYYSQDDNCA LENEDVQSQK bmy_11606T0/1-1226 ---------M FYRLPSWXVC CKESS--SAS SYYSQDDNCA LENEDVQFQK ENSTTRP00000016039/1-1366 XXXXXXXXXX XXXLPSWHVC CKESS--SAS SYYSQDDNCA LENEDVQFQK 251 300 ENSP00000263688/1-1254 KDEREGPINA ESLGKSGSNL PISPKEHKLK DDSIVDV--Q NTESKKLSPP ENSBTAP00000043864/1-1252 KDERGGPVNA ELSGKVGSSL PVPPEENKLK DDYIVNVQKQ DTESKKLSPS bmy_11606T0/1-1226 KDEREGPINA ELSGKVGSSL PVPPEEHKVK DDYVVNV--Q NTESKKLSPS ENSTTRP00000016039/1-1366 K--------- ---------- ---------- ---------- NTESKKLSPS 301 350 ENSP00000263688/1-1254 VVETLPTVDL HEESSNAVVD SETVENISSS STSEITPISK LDEIEKSGTI ENSBTAP00000043864/1-1252 VTETLPTVDV HEDSSSVVVD SENTENISSS STSEITPISK LDEIEDSGTI bmy_11606T0/1-1226 VIETLPTVDL PEDPSSVVVD SENVENTSSS STSEITPISK LDEIEKSGTV ENSTTRP00000016039/1-1366 VIETLPTVDL HEDSSSVVVD SENVENISSS STSEITPISK LDEIEKSDTV 351 400 ENSP00000263688/1-1254 PIAKPSETEQ SETDCDVGEA LDASAPIEQP SFVSPPDSLV GQHIENVSSS ENSBTAP00000043864/1-1252 PIAKPGETEH SETDCDVGEA LDANAPVDQP SFVSPPESLV GQHIENVSSS bmy_11606T0/1-1226 PIAKPSETEQ SETDCDVGEA LDANAPVDQP SFVSPPESLV GQHIENVSSS ENSTTRP00000016039/1-1366 PIAKPSETEQ SETDCDVGEA LDANAPVDQP SFVSPPESLV SQHIENVSSL 401 450 ENSP00000263688/1-1254 HGKGKITKSE FESKVSASEQ GGGDPKSALN A-SDNLKNES SDYTKPGDID ENSBTAP00000043864/1-1252 HGKGKITKSE FESKVSSSDQ GGSDPKSALN ASSNNLKNES SDYTKPGEID bmy_11606T0/1-1226 HGKGKITKSE FESKVSSSDQ GGGDPKSALN A-SDNLKSES SDYTKPGEID ENSTTRP00000016039/1-1366 HAKGKITKSE FESKVSSSDQ GGGDPKSALN A-SDNLKSES SDYTKPGEID 451 500 ENSP00000263688/1-1254 PTSVASPKDP EDIPTFDEWK KKVMEVEKEK SQSMHASSNG GSHATKKVQK ENSBTAP00000043864/1-1252 PTPVTNSKDP EDIPTFDEWK KKVMEVEKEK SQSMHPSSNG GLHATKKVQK bmy_11606T0/1-1226 PASITNPKDP EDIPTFDEWK KKVMEVEKEK SQSMHPSSNG GLHATKKVQK ENSTTRP00000016039/1-1366 PASVTNPKDP EDIPTFDEWK KKVMEVEKEK SQSMHPSSNG GLHATKKVQK 501 550 ENSP00000263688/1-1254 NRNNYASVEC GAKILAANPE AKSTSAILIE NMDLYMLNPC STKIWFVIEL ENSBTAP00000043864/1-1252 NRNNYASVEC GAKILAANPE AKSTSAILIE NMDLYMLNPC STKIWFVIEL bmy_11606T0/1-1226 NRNNYASVEC GAKILAANPE AKSTSAILIE NMDLYMLNPC STKIWFVIEL ENSTTRP00000016039/1-1366 NRNNYASVEC GAKILAANPE AKSTSAILIE NMDLYMLNPC STKIWFVIEL 551 600 ENSP00000263688/1-1254 CEPIQVKQLD IANYELFSST PKDFLVSISD RYPTNKWIKL GTFHGRDERN ENSBTAP00000043864/1-1252 CEPIQVKQFD IANYELFSST PKDFLVSISD RYPTNKWIKL GTFHGRDERN bmy_11606T0/1-1226 CEPIQVKQFD IANYELFSST PKDFLVSISD RYPTNKWIKL GTFHGRDERN ENSTTRP00000016039/1-1366 CEPIQVKQFD IANYELFSST PKDFLVSISD RYPTNKWIKL GTFHGRDERN 601 650 ENSP00000263688/1-1254 VQSFPLDEQM YAKYVKMFIK YIKVELLSHF GSEHFCPLSL IRVFGTSMVE ENSBTAP00000043864/1-1252 VQSFPLDEQM YAKYVKMFIK YIKVELVSHF GSEHFCPLSL IRVFGTSMVE bmy_11606T0/1-1226 VQSFPLDEQM YAKYVKMFIK YIKVELVSHF GSEHFCPLSL IRVFGTSMVE ENSTTRP00000016039/1-1366 VQSFPLDEQM YAKYV----- --KVELVSHF GSEHFCPLSL ITXXXXXXXX 651 700 ENSP00000263688/1-1254 EYEEIADSQY HSERQELFDE DYDYPLDYNT GEDKSSKNLL GSATNAILNM ENSBTAP00000043864/1-1252 EYEEIADSQY QSERQELFDE DYDYPLDYNT GEDKSSKNLL GSATNAILNM bmy_11606T0/1-1226 EYEEIADSQY QSERQELFDE DYDYPLDYNT GEDKSSKNLL GSATNAILNM ENSTTRP00000016039/1-1366 XXXXXXXXXX XXXXXXXXXX XXXYPLDYNT GEDKSSKNLL GSATNAILNM 701 750 ENSP00000263688/1-1254 VNIAANILGA KTEDLTEGNK SISENATATA APKMPESTPV STPVPSPEYV ENSBTAP00000043864/1-1252 VNIAANILGA KTEDLTEGNK TISENASATA APKMPESAPV SAPVPSHEFE bmy_11606T0/1-1226 VNIAANILGA KTEDLTEGNK SISENATAST APKMPESAPV STPVPSHEFV ENSTTRP00000016039/1-1366 VNIAANILGA KTEDLTEGNK SISENATATT AHKM-ESAPV STPVPSHEFV 751 800 ENSP00000263688/1-1254 TTEVHTHDME PSTPDTPKES PIVQLVQEEE EEASPSTVTL LGSGEQEDES ENSBTAP00000043864/1-1252 TTEGHVHDIE SLSPDTTKES PIVQLVQEEE EEASPSTVTL LGSGEQEDET bmy_11606T0/1-1226 TTEGLVHDTE PSSPDTTKEG PIVQLVQEEE EEASPSTVTL LGSGEQEDET ENSTTRP00000016039/1-1366 TTEGLVHDTE PSSPDTTKEG PIVQLVQEEE EEASPSTVTL LGSGEQEDET 801 850 ENSP00000263688/1-1254 SPWFESETQI FCSELTTICC ISSFSEYIYK WCSVRVALYR QRSRTALSKG ENSBTAP00000043864/1-1252 SPWFESETQI FCSELTTICC ISSFSEYIYK WCSVRVARYR QRSRTALSKQ bmy_11606T0/1-1226 SPWFESETQI FCSELTTVCC ISSFSEYIYK WCSVRVAHYR QRSRTAMSKE ENSTTRP00000016039/1-1366 SPWFESETQI FCSELTTICC ISSFSEYIYK WCSVRVAHYR QRSRTAVSKE 851 900 ENSP00000263688/1-1254 KDYLVLAQPP LLLPAESVDV SVLQPLSGEL ENTNIEREAE TVVLGDLSSS ENSBTAP00000043864/1-1252 KEYLMSAEPP LVLPEEPVDV SLLQPPGGEP DS-NKEKDAE TSVLDDL-SG bmy_11606T0/1-1226 KEYLVSAQSP SVLPEESVDV SVLQPPGGEP DSKSKEKKAE TIVLGDL-SS ENSTTRP00000016039/1-1366 KEYLVSAQSP LVLPEESVDV SVLQPPAGEP DSKSKEKKAE TVVLGDL-SS 901 950 ENSP00000263688/1-1254 MHQDDLVNHT VDAVELEPSH SQTLSQSLLL DITPEINPLP KIEVSESVEY ENSBTAP00000043864/1-1252 VLQEDLINHT LDAIELEPSH PQTLSQSVLL DVTPEINSLS KIEVSEPVKY bmy_11606T0/1-1226 VHQGGLINHT LDAIELEPSH PQTLSQSLLL DVTPEINSLS KIEVSEPIKY ENSTTRP00000016039/1-1366 VHQGGLINHT LDAIELEPSH PQTLSQSLLL DVTPEINSLS KIEVSEPIKY 951 1000 ENSP00000263688/1-1254 EAGHIPSPVI PQESSVEIDN ETEQKSESFS SIEKPSITYE TNKVNELMDN ENSBTAP00000043864/1-1252 EAGHSPSQVI PQDSSVEVDN ETEKRSESFS SIEKPTVISE TKILDKVMDN bmy_11606T0/1-1226 EAGRTPSQVI PQENSVEVDN ETEKRSESFS SIEKPTVTYE TKKLDEVMDN ENSTTRP00000016039/1-1366 EAGRTPSQVI PQESSVEVDN ETEKRSDSFS SIEKPTVIYE TKKLDEVMDN 1001 1050 ENSP00000263688/1-1254 IIKEDVNSMQ IFTKLSETIV PPINTATVPD NEDGEAKMNI ADTAKQTLIS ENSBTAP00000043864/1-1252 VVKEDINSMR ITTKLSETIV PPVNTATMPD IEAGEAKMNI ADTPKQISTP bmy_11606T0/1-1226 IVKED--SMQ IITKLSETIV SPLNTATVPD NEDGEAKMNI ADTPKQILTP ENSTTRP00000016039/1-1366 IVKED--SMQ IITKLSETIV SPVNTAIVPD SEDGEAKMNI ADTPKQILTP 1051 1100 ENSP00000263688/1-1254 VVDSSSLPEV KEEEQSPEDA LLRGLQRTAT DFYAELQNST DLGYANGNLV ENSBTAP00000043864/1-1252 VVDSSSLPEV KDDEQSPEDV LLRGLQRTAT DFYAELQNSS DLGYANGNLV bmy_11606T0/1-1226 VVDSSSLPEA KEEEQSPEDA LLRGLQRTAT DFYAELQNSS DLGYANGNLV ENSTTRP00000016039/1-1366 VVDSSSLPEA KEEEQSPEDA LLRGLQRTAT DFYAELQNSS DLGYANGNLI 1101 1150 ENSP00000263688/1-1254 HGSNQKESVF MRLNNRIKAL EVNMSLSGRY LEELSQRYRK QMEEMQKAFN ENSBTAP00000043864/1-1252 HGSNQKESVF MRLNNRIKAL EVNMSLSGRY LEELSQRYRK QMEEMQKAFN bmy_11606T0/1-1226 HGSNQKESVF MRLNNRIKAL EVNMSLSGRY LEELSQRYRK QMEEMQKAFN ENSTTRP00000016039/1-1366 HGSNQKESVF MRLNNRIKAL EVNMSLSGRY LEELS----- ---------- 1151 1200 ENSP00000263688/1-1254 KTIVKLQNTS RIAEEQDQRQ TEAIQLLQAQ LTNMTQLVSN LSATVAELKR ENSBTAP00000043864/1-1252 KTIVKLQNTS RIAEEQDQRQ TEAIQLLQAQ LTNMTQLVSN LSTTVAELKH bmy_11606T0/1-1226 KTIVKLQNTS RIAEEQDQRQ TEAIQLLQAQ LTNMTQLVSN LSTTVAELKH ENSTTRP00000016039/1-1366 ---------- -----QDQRQ TEAIQLLQAQ LTNMTQLVSN LSTTVAELKH 1201 1250 ENSP00000263688/1-1254 EVSDRQSYLV ISLVLCVVLG LMLCMQRCRN TSQFDGDYIS KLPKSNQYPS ENSBTAP00000043864/1-1252 EVSDRQSYLV ISLVLCVVLG LMLCMQRCRN TSQFDGDYIS KLPKSNQYPS bmy_11606T0/1-1226 EVSDRQSYLV ISLVLCVVLG LMLCMQRCRN TSQFDGDYIS KLPKSNQ--- ENSTTRP00000016039/1-1366 EVSDRQSYLV ISLVLCVILG LMLCMQRCRN TSQFDGDYIS KLPKSNQYPS 1251 1300 ENSP00000263688/1-1254 PKRCFSSYDD MNLKRRTSFP LMRSKSLQLT GKEVDPNDLY IVEPLKFSPE ENSBTAP00000043864/1-1252 PKRCFSSYDD MSLKRRTSFP LIRSKSLQLT GKEVDPSDLY IVEPLKFSPE bmy_11606T0/1-1226 ---CFSSYDD MSLKRRTSFP LIRSKSLQLT GKEVDPNDLY IVEPLKFSPE ENSTTRP00000016039/1-1366 PKRCFSSYDD MSLKRRTSFP LIRSKSLQLT GKEVDPNDLY IVEPLKFSPE 1301 1350 ENSP00000263688/1-1254 KKKKRCKYKI EKIETIKPEE PLHPIANGDI KGRKPFTNQR DFSNMGEVYH ENSBTAP00000043864/1-1252 KKKKRCKYKT EKIETIKPAD PLHPVANGDI KGRKPFTNQR DFSNMGEVYH bmy_11606T0/1-1226 KKKKRCKYKT EKIETIKPAH PLHPIANGDI KGRKPFTNQR DFSNMGEVYH ENSTTRP00000016039/1-1366 KKKKRCKYKT EKIETIKPAH PLHPIANGDI KGRKPFTNQR DFSNMGEVYH 1351 1400 ENSP00000263688/1-1254 SSYKGPPSEG SSETSSQSEE SYFCGISACT SLCNGQSQKT KTEKRALKRR ENSBTAP00000043864/1-1252 SSYKGPPSEG SSETSSQSEE SYFCGISACT SLCNGQSQKT KTEKRALKRR bmy_11606T0/1-1226 SSYKGPPSEG SSETSSQSEE SYFCGISACT SLCNGQSQKT KTEKRALKRR ENSTTRP00000016039/1-1366 SSYKGPPSEG SSETSSQSEE SYFCGISACT SLCNGQSQKT KTEKRALKRR 1401 1450 ENSP00000263688/1-1254 RSKVQDQGKL IKTLIQTKSG SLPSLHDIIK GNKEITVGTF GVTAVSGHI ENSBTAP00000043864/1-1252 RSKVQDQGKL IKTLIQTKSG SLPSLHDIIK GNKELTVGTF GVTAVSGHI bmy_11606T0/1-1226 RSKVQDQGKL IKTLIQTKSG SLPSLHDIIK GNKEITVGTL GVTAVSGHI ENSTTRP00000016039/1-1366 RSKVQDQGKL IKTLIQTKSG SLPSLHDIIK GNKEITVGTL GVTAVSGHI