KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:55:27 2014 Check: 00 .. Name: bmy_09201T0/1-364 Len: 406 Check: 7561 Weight: 1.00 Name: ENSP00000361207/1-345 Len: 406 Check: 1508 Weight: 1.00 Name: ENSBTAP00000043881/1-345 Len: 406 Check: 8657 Weight: 1.00 Name: BACU005468/1-345 Len: 406 Check: 9048 Weight: 1.00 Name: ENSTTRP00000014283/1-332 Len: 406 Check: 3843 Weight: 1.00 // 1 50 bmy_09201T0/1-364 -MAARTESAR GQGLGTGECQ GGRDCVEEVT APGGWGREDE APCGYRPKFS ENSP00000361207/1-345 MLAARLVCLR ---------- ---------T LPSRV----- ----FHPAFT ENSBTAP00000043881/1-345 MLAARLVCLR ---------- ---------A LPSRV----- ----FHPAFT BACU005468/1-345 MLAARLVCLR ---------- ---------T LPSRV----- ----FHPALT ENSTTRP00000014283/1-332 -LAARLVCLR ---------- ---------T LPSRV----- ----FHPALT 51 100 bmy_09201T0/1-364 NSTLVQVHEL FEVQEGEFPW QVSIQISRKH LCGGSIIHRW WVLMAAHCFS ENSP00000361207/1-345 KASPV----- ---------- ---------- -VKNSITKNQ WLLTPS---- ENSBTAP00000043881/1-345 KASPV----- ---------- ---------- -VKNSITKNQ WLLTPS---- BACU005468/1-345 KASPV----- ---------- ---------- -VKNSITKNQ WLLPPS---- ENSTTRP00000014283/1-332 RASPV----- ---------- ---------- -VKNSITKNQ WLLPPS---- 101 150 bmy_09201T0/1-364 RTLRGYATKT RIGIRRGKTS QELKEAALEP SLEKIFKIDQ MGRWFIAGGA ENSP00000361207/1-345 ---REYATKT RIGIRRGRTG QELKEAALEP SMEKIFKIDQ MGRWFVAGGA ENSBTAP00000043881/1-345 ---REYATKT RIGIRRGKTT QELKEAALEP SVEKIFKIDQ MGRWFIAGGA BACU005468/1-345 ---REYATKT RIGIRRGKTS QELKEAALEP SLEKIFKIDQ MGRWFIAGGA ENSTTRP00000014283/1-332 ---REYATKT RLGIRRGKTS QELKEAALEP SLEKIFKIDQ MGRWFIAGGA 151 200 bmy_09201T0/1-364 TVGLGDLCYY GLGMSNEIGA IEKAVIRPQ- ---------- ---------- ENSP00000361207/1-345 AVGLGALCYY GLGLSNEIGA IEKAVIWPQY VKDRIHSTYM YLAGSIGLTA ENSBTAP00000043881/1-345 AVGLGALCYY GLGMSNEIGA IEKAVIWPQY VKDRIHSTYM YLAGSIGLTA BACU005468/1-345 AVGLRALCYY GLGMSNEIGA IEKAIIWPQY VKDRIHTTYM YLAGSIGITA ENSTTRP00000014283/1-332 AVGLGALCYY GLGMSNEIGA LEKAVIWPQY VKDRIHTTYM YLAGSIGITA 201 250 bmy_09201T0/1-364 ------EQNS CPHEFMMRGP WVTTGATFAA MIGAGMLVQS ISYDQSPGPK ENSP00000361207/1-345 LSAIAISRTP VLMNFMMRGS WVTIGVTFAA MVGAGMLVRS IPYDQSPGPK ENSBTAP00000043881/1-345 LSAVAVSRTP ALMNFMMRGS WITIGATFAA MIGAGMLVQS ISYEQSPGPK BACU005468/1-345 LSALAVSRTP ALMNFMMRGS WVTIGATFAA MIGAGMLVQS ISYDQSPGRK ENSTTRP00000014283/1-332 LSALAVNRTP ALMNFMMRGS WV-------- ----GMLVQS IPYDQSPGPK 251 300 bmy_09201T0/1-364 HLAWLLHSGV MGAVVAPLTI LGGPLLVRAA WYTAGIAGGL STVAMCAPSE ENSP00000361207/1-345 HLAWLLHSGV MGAVVAPLTI LGGPLLIRAA WYTAGIVGGL STVAMCAPSE ENSBTAP00000043881/1-345 HLAWLLHSGV MGAVVAPLTI LGGPLLLRAA WYTAGIVGGL STVAMCAPSE BACU005468/1-345 HLAWLLHSGV MGAVVAPLTI LGGPLLIRAA WYTAGVVGGL STVAMCAPSE ENSTTRP00000014283/1-332 HLAWLLHSGV MGAVVAPLTI LGGPLLIRAA WYTAGVVGGL STVAMCAPSE 301 350 bmy_09201T0/1-364 KFLNMGPSLG VGLGVIFVSS LGSMFLPPTT VAGATLYSVA IYGGLVLFSM ENSP00000361207/1-345 KFLNMGAPLG VGLGLVFVSS LGSMFLPPTT VAGATLYSVA MYGGLVLFSM ENSBTAP00000043881/1-345 KFLNMGAPLG VGLGVVFVSS LGSMFLPPTT VAGATLYSVA VYGGLVLFSM BACU005468/1-345 KFLNMGAPLG VGLGVVFVSS LGSVFLPPTT VAGATLYSVA VYGGLVLFSM ENSTTRP00000014283/1-332 KFLNMGAPLG VGLGVVFVSS LGSMFLPPTT VAGATLYSVA IYGGLVLFSM 351 400 bmy_09201T0/1-364 FLLYDAQKVI KRAEVVPVYA VQKYNPINSM LGIYMDILNI FM-------- ENSP00000361207/1-345 FLLYDTQKVI KRAEVSPMYG VQKYDPINSM LSIYMDTLNI FMRVATMLAT ENSBTAP00000043881/1-345 FLLYDTQKVI KRAEVVPMYG VQKYDPINSM LGIYMDTLNI FMRVATILAT BACU005468/1-345 FLLYDTQKVI KRAEVVPVYG VQKYDPINSM LGIYMDTLNI FMRIASILAT ENSTTRP00000014283/1-332 FLLYDTQKVI KRAEVVPVYG VQKYDPINSM LGIYMDTLNI FMRIASILAT 401 450 bmy_09201T0/1-364 ------ ENSP00000361207/1-345 GGNRKK ENSBTAP00000043881/1-345 GGNRKK BACU005468/1-345 GGNRKK ENSTTRP00000014283/1-332 GGNRKK