KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:55:28 2014 Check: 00 .. Name: ENSTTRP00000001833/1-746 Len: 749 Check: 740 Weight: 1.00 Name: ENSP00000371805/1-718 Len: 749 Check: 3145 Weight: 1.00 Name: ENSBTAP00000043924/1-713 Len: 749 Check: 1804 Weight: 1.00 Name: bmy_12836T0/1-658 Len: 749 Check: 6929 Weight: 1.00 Name: BACU012141/1-679 Len: 749 Check: 8377 Weight: 1.00 // 1 50 ENSTTRP00000001833/1-746 --MASIGEDA ASAGD-VPPA AAAVADGAHL LGFSDEILLH ILSHVPSIDL ENSP00000371805/1-718 --MASSGEDI SNDDDDMHPA AAGMADGVHL LGFSDEILLH ILSHVPSTDL ENSBTAP00000043924/1-713 MSQRHPTQDT CDDSD-TAP- ---VADSAHL LGFSDEILLH ILSHVPSTDL bmy_12836T0/1-658 --MASIGEDT SNDGD-APPA AAAVADGAHL LGFSDEILLH ILSHVPSIDL BACU012141/1-679 --MASIGEDT SNDGD-APPA AAAVADDAHL LGFSDEILLH ILSHVPSIDL 51 100 ENSTTRP00000001833/1-746 ILNVRRTCRK LAALCLDKSL THTVLLQKDY EASEDKVKQL VTEIGWEIQQ ENSP00000371805/1-718 ILNVRRTCRK LAALCLDKSL IHTVLLQKDY QASEDKVRQL VKEIGREIQQ ENSBTAP00000043924/1-713 VLNVRRTCRK LAALCLDKSL THTVLLQKDY EASEDKVKRL VKEIGRDVQQ bmy_12836T0/1-658 ILNVRRTCRK LAALCLDKSL THTVLLQKDY E--------- ---------- BACU012141/1-679 ILNVRRTCRK LAALCLDKSL THTVLLQKDY EASEDKVKRL VTEIGREVQQ 101 150 ENSTTRP00000001833/1-746 LSMAGCYWLS GSTVEHVARC RGLVKVNLSG CHLTSLRLSK VLSALQRLRS ENSP00000371805/1-718 LSMAGCYWLP GSTVEHVARC RSLVKVNLSG CHLTSLRLSK MLSALQHLRS ENSBTAP00000043924/1-713 LSMAGCYWLS GTTVEHVARC RGLVRVNLSG CPLTSLRLSK VLSALPHLRS bmy_12836T0/1-658 ---------- ---------- ---------- ---------- VLSALQRLRS BACU012141/1-679 LSMAGCYWLS GSTVEHVARC RGLVKVNLSG CHLTSLRLSK VLSALQRLRS 151 200 ENSTTRP00000001833/1-746 LAIDVSPGFD ASQLSGECKA TLSRVRELKQ TLYTPSYGVV PCCTSLEKLL ENSP00000371805/1-718 LAIDVSPGFD ASQLSSECKA TLSRVRELKQ TLFTPSYGVV PCCTSLEKLL ENSBTAP00000043924/1-713 LAIDVSPGFD ASQLSSECKA TLSRVRELKQ TLYTPSYGVV PCCTSLEKLL bmy_12836T0/1-658 LAIDVSPGFD ASQLSGECKA TLSRVRELKQ TLYTPSYGVV PCCTSLEKLL BACU012141/1-679 LAIDVSPGFD ASQLSGECKA TLSRVRELKQ TLYTPSYGVV PCCTSLEKLL 201 250 ENSTTRP00000001833/1-746 LYFEILDRTR EGAVLSGQLM VGQSNVPRYQ HLRVFYARLA PGYINQEVVR ENSP00000371805/1-718 LYFEILDRTR EGAILSGQLM VGQSNVPHYQ NLRVFYARLA PGYINQEVVR ENSBTAP00000043924/1-713 LYFEILDRTR EGAVLSGQLM VGQSNVPHYQ HLRVFYARLA PGYINQEVVR bmy_12836T0/1-658 LYFEILDRTR EGAVLSGQLM VGQSNVPRYQ HLRVFYARLA PGYINQEVVR BACU012141/1-679 LYFEILDRTR EGAVLSGQLM VGQSNVPRYQ HLRVFYARLA PGYINQEVVR 251 300 ENSTTRP00000001833/1-746 LYLAVLSDRT PENLHAFLIS VPGSFAESGA TKNLLESMAR NVALDALQLP ENSP00000371805/1-718 LYLAVLSDRT PQNLHAFLIS VPGSFAESGA TKNLLDSMAR NVVLDALQLP ENSBTAP00000043924/1-713 LYLAVLSDRT PENLHAFLIS VPGSFAESGA TRNLLESMAR NVALDALQLP bmy_12836T0/1-658 LYLAVLSDRT PENLHAFLIS VPGSFAESGA TKNLLESMAR NVALDALQLP BACU012141/1-679 LYLAVLSDRT PENLHAFLIS VPGSFAESGA TKNLLESMAR NVALDALQLP 301 350 ENSTTRP00000001833/1-746 KSWLNGSALL QHMKFSSPFY FSFSRCALSG GHLIRRVIDG GRDLRSLAGL ENSP00000371805/1-718 KSWLNGSSLL QHMKFNNPFY FSFSRCTLSG GHLIQQVING GKDLRSLASL ENSBTAP00000043924/1-713 KSWLNGSALL QHMKFSSPFY FSFSRCALSG GHLLQRVIDG GRDLQSLAGL bmy_12836T0/1-658 KSWLNGSALL QHMKFSSPFY FSFSRCALSG GHLIRRVIDG GRDLRSLAGL BACU012141/1-679 KSWLNGSALL QHMKFSSPFY FSFSRCALSG GHLIRRVIDG GRDLRSLAGL 351 400 ENSTTRP00000001833/1-746 NLSGCAHCLA PDSLLRKAED DIDSGILETL VAACGNLRHL NLSAAHHHSP ENSP00000371805/1-718 NLSGCVHCLS PDSLLRKAED DIDSSILETL VASCCNLRHL NLSAAHHHSS ENSBTAP00000043924/1-713 NLSGCAHCLA PDCLLRKAED DIDPAILEAL VAACPNLRHL NLSAAHHHSP bmy_12836T0/1-658 NLSGCAHCLA PDSLLRKAED DIDSGILETL VAACGNLRHL NLSAAHHHSP BACU012141/1-679 NLSGCAHCLA PDSLLRKAED DIDSGILETL VAACGNLRHL NLSAAHHHSP 401 450 ENSTTRP00000001833/1-746 EGPGRHLCQL LARLCHLRSL SLPVCAVADS APRADRAPVQ PATHAVPRGF ENSP00000371805/1-718 EGLGRHLCQL LARLRHLRSL SLPVCSVADS APRADRAPAQ PAMHAVPRGF ENSBTAP00000043924/1-713 AGPSQHLCQL LARLPHLRSL SLPVCAVADS PPRADRAPIP PTMRAVPRGF bmy_12836T0/1-658 EGPGRHLCQL LARLCHLRSL SLPVCAVADS APRADRAPVQ PATHAVPRGF BACU012141/1-679 EGPGRHLCQL LARLCHLRSL SLPVCAVADS APRADRAPVQ PATHAVPRGF 451 500 ENSTTRP00000001833/1-746 GKKVRIGVPS GPDPFSGQAG PLPSSVFWSL LKSVPFLDRL ELIGSXXXXX ENSP00000371805/1-718 GKKVRVGVQS CPSPFSGQAC PQPSSVFWSL LKNLPFLEHL ELIGSNFSSA ENSBTAP00000043924/1-713 GKKVRIGVQS V--PFPGPAG PQPSSVFWSL LKNVPFLDRL ELIGSNFSSA bmy_12836T0/1-658 GKKVRIGVPS GPDPFSGQAG PLPSSVFWSL LKSVPFLDRL ELIGSNFSSA BACU012141/1-679 GKKVRIGVPS GPDPFSGQAG PLPSSVFWSL LKSVPFLDRL ELIGSNFSSA 501 550 ENSTTRP00000001833/1-746 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000371805/1-718 MPRNEPAIRN SLPPCSRAQS VGDSEVAAIG QLAFLRHLTL AQLPSVLTGS ENSBTAP00000043924/1-713 MPRNEPAIRN SLPPCSRAQS VGDAEVAAIG QLAFLRHLTL AQLPSILTGS bmy_12836T0/1-658 MPRNEPAIRN SLPPCGRAQS VGDSEVAAIG QLAFLRHLTL AQLPSILTGS BACU012141/1-679 MPRNEPAIRN SLPPCGRAQS VGDSEVAAIG QLAFLRHLTL AQLPSILTGS 551 600 ENSTTRP00000001833/1-746 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXLEQP ENSP00000371805/1-718 GLVNIGLQCQ QLRSLSLANL GMMGKVVYMP ALSDMLKHCK RLRDLRLEQP ENSBTAP00000043924/1-713 GLVSIGLQCQ QLQSLSLAHL GLMGKVVYMS GLSDMLKHCK RLKDLRLEQP bmy_12836T0/1-658 GLVSIGLQCQ QLQSLSLAHL GTMGKVAYMS ALSDMLKHCR RLKDLRLEQP BACU012141/1-679 GLVSIGLQCQ QLQSLSLAHL GTMGKVAYMS ALSDMLKHCR RLKDLRLEQP 601 650 ENSTTRP00000001833/1-746 YFSANAQFFQ ALSQCSALQR LCLVSRSGTL QPEAVLAFMA RCLHVVVCHL ENSP00000371805/1-718 YFSANAQFFQ ALSQCPSLQR LCLVSRSGTL QPDAVLAFMA RCLQVVMCHL ENSBTAP00000043924/1-713 YFSANAQFFQ ALSQCSALQR LCLVSRSGTL QPEAVLAFMA RCLHVVVCHL bmy_12836T0/1-658 YFSANAQFFQ ALSQCSALQR LCLVSRSGTL QPEAVLAFMA RCLHVVVCHL BACU012141/1-679 YFSANAQFFQ ALSQCSALQR LCLVSRSGTL QPEAVLAFMA RCLHVVVCHL 651 700 ENSTTRP00000001833/1-746 FTGESLSTCR SLQQXXXXXW RDMTTRRPLG TELEVPARGS PRLRPPCRTV ENSP00000371805/1-718 FTGESLATCK SLQQSLL--- RSFQAERPAL NVVIFP---- ---------- ENSBTAP00000043924/1-713 FTGESLSTCR SLQQALL--- RSFQAERPAL NVVVFP---- ---------- bmy_12836T0/1-658 FTGESLSTCR SLQQSLL--- RSFQAERPAL NVVIFP---- ---------- BACU012141/1-679 FTGESLSTCR SLQQSLL--- RSLSLQQQT- ---------- ---------- 701 750 ENSTTRP00000001833/1-746 LVVAPCPCGL LLSVPGGILA EVFPSLVYSI SKNSLASTSR LESSNGFVL ENSP00000371805/1-718 -LLHEGLTDV IRDVPLVHLD EI-------- ---TLFKSRV AEEPPNLWW ENSBTAP00000043924/1-713 -LLHEGLTDV IRDVPMVHLD EV-------- ---TLFKSRV AEEPPNLWW bmy_12836T0/1-658 -LLHEGLTDV IRDVPMVHLD EV-------- ---TLFKSRV AEEPPNLWW BACU012141/1-679 ---------A WLSIP----- ---------- ---------- ---------