KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:55:30 2014 Check: 00 .. Name: ENSTTRP00000014301/1-1575 Len: 1585 Check: 6520 Weight: 1.00 Name: ENSP00000374467/1-1581 Len: 1585 Check: 2751 Weight: 1.00 Name: ENSBTAP00000043950/1-1585 Len: 1585 Check: 7125 Weight: 1.00 Name: bmy_03608T0/1-952 Len: 1585 Check: 610 Weight: 1.00 Name: BACU005622/1-1581 Len: 1585 Check: 2262 Weight: 1.00 // 1 50 ENSTTRP00000014301/1-1575 MPLAFCGSEN HSAAYRVDQG VLNNGCFVDA LNVVPHVFLL FITFPILFIG ENSP00000374467/1-1581 MPLAFCGSEN HSAAYRVDQG VLNNGCFVDA LNVVPHVFLL FITFPILFIG ENSBTAP00000043950/1-1585 MPLAFCGSEN HSAAYRVDQG VLNNGCFVDA LNVVPHVFLL FITFPILFIG bmy_03608T0/1-952 ---------- ---------- ---------- ---------- ---------- BACU005622/1-1581 MPLAFCGSEN HSAAYRVDQG VLNNGCFVDA LNVVPHVFLL FITFPILFIG 51 100 ENSTTRP00000014301/1-1575 WGSQSSKVHI HHSTWLHFPG HNLRWILTFM LLFVLVCEIA EGILSDGVTE ENSP00000374467/1-1581 WGSQSSKVHI HHSTWLHFPG HNLRWILTFM LLFVLVCEIA EGILSDGVTE ENSBTAP00000043950/1-1585 WGSQSSKVHI HHSTWLHFPG HNLRWILTFM LLFVLVCEIA EGILSDGVTE bmy_03608T0/1-952 ---------- ---------- ---------- ---------- ---------- BACU005622/1-1581 WGSQSSKVHI HHSTWLHFPG HNLRWILTFM LLFVLVCEIA EGILSDGVTE 101 150 ENSTTRP00000014301/1-1575 SRHLHLYMPA GMAFMAAVTS VIYYHNIETS NFPKLLIALL VYWTLAFITK ENSP00000374467/1-1581 SHHLHLYMPA GMAFMAAVTS VVYYHNIETS NFPKLLIALL VYWTLAFITK ENSBTAP00000043950/1-1585 SRHLHLYMPA GMAFMAAVTS VVYYHNIETS NFPKLLIALL VYWTLAFITK bmy_03608T0/1-952 ---------- ---------- ---------- ---------- ---------- BACU005622/1-1581 SRHLHLYMPA GMAFMAAVTS VIYYHNIETS NFPKLLIALL VYWTLAFITK 151 200 ENSTTRP00000014301/1-1575 TIKFVKFYDH AIGFSQLRFC LTGLLVILYG MLLLVEVNVI RVRRYIFFKM ENSP00000374467/1-1581 TIKFVKFLDH AIGFSQLRFC LTGLLVILYG MLLLVEVNVI RVRRYIFFKT ENSBTAP00000043950/1-1585 TIKFVKFYDH AIGFSQLRFC LTGLLVILYG MLLLVEINVI RVRRYILFKT bmy_03608T0/1-952 ---------- ---------- ---------- ---------- ---------- BACU005622/1-1581 TIKFVKFYDH DIGFSQLRFC LTGLLVILYG MLLLVEVNVI RVRRYIFFKM 201 250 ENSTTRP00000014301/1-1575 PREVKPPEDL QDLGVRFLQP FVNLLSKGTY WWMNAFIKTA HKKPIDLRAI ENSP00000374467/1-1581 PREVKPPEDL QDLGVRFLQP FVNLLSKGTY WWMNAFIKTA HKKPIDLRAI ENSBTAP00000043950/1-1585 PREVKPPEDL QDLGVRFLQP FVNLLSKGTY WWMNAFIKTA HKKPIDLRAI bmy_03608T0/1-952 ---------- ---------- ---------- ---------- ---------- BACU005622/1-1581 PREVKPPEDL QDLGVRFLQP FVNLLSKGTY WWMNAFIKTA HKKPIDLRAI 251 300 ENSTTRP00000014301/1-1575 GKLPIAMRAL TNYQRLCEAF DAQERKDMQS TQGARAIW-A LCHAF-RRLV ENSP00000374467/1-1581 GKLPIAMRAL TNYQRLCEAF DAQVRKDIQG TQGARAIWQA LSHAFGRRLV ENSBTAP00000043950/1-1585 GKLPIAMRAL TNYQRLCEAF DAQARKDTQS TQGARAIWQA LCCAFGRRLV bmy_03608T0/1-952 ---------- ---------- ---------- ---------- ---------- BACU005622/1-1581 GKLPIAMRAL TNYQRLCEAF DAQARKDIQS TQGARAIWQA LCHAFGRRLV 301 350 ENSTTRP00000014301/1-1575 LSSTFRILAD LLGFAGPLCI FGIVDHLGKE NRVFQPKTQF LGVYFVSSQE ENSP00000374467/1-1581 LSSTFRILAD LLGFAGPLCI FGIVDHLGKE NDVFQPKTQF LGVYFVSSQE ENSBTAP00000043950/1-1585 LSSTFRILAD LLGFAGPLCI FGIVDHLGKE NGVFQPKTQF LGVYFVSSQE bmy_03608T0/1-952 ---------- ---------- ---------- ---------- ---------- BACU005622/1-1581 LSSTFRILAD LLGFAGPLCI FGIVDHLGKE NHVFQPKTQF LGVYFVSSQE 351 400 ENSTTRP00000014301/1-1575 FLANAYVLAV LLFLALLLQR TFLQASYYVA IETGINLRGA IQTKIYNKIM ENSP00000374467/1-1581 FLANAYVLAV LLFLALLLQR TFLQASYYVA IETGINLRGA IQTKIYNKIM ENSBTAP00000043950/1-1585 FLANAYVLAV LLFLALLLQR TFLQASYYVA IETGINLRGA IQTKIYNKIM bmy_03608T0/1-952 ---------- ---------- ---------- ---------- ---------- BACU005622/1-1581 FLANAYVLAV LLFLALLLQR TFLQASYYVA IETGINLRGA IQTKIYNKIM 401 450 ENSTTRP00000014301/1-1575 HLSTSNLSMG EMTAGQICNL VAIDTNQLMW FFFLCPNLWA MPVQIIVGVI ENSP00000374467/1-1581 HLSTSNLSMG EMTAGQICNL VAIDTNQLMW FFFLCPNLWA MPVQIIVGVI ENSBTAP00000043950/1-1585 HLSTSNLSMG EMTAGQICNL VAIDTNQLMW FFFLCPNLWA MPVQIIVGVI bmy_03608T0/1-952 ---------- ---------- ---------- ---------- ---------- BACU005622/1-1581 HLSTSNLSMG EMTAGQICNL VAIDTNQLMW FFFLCPNLWA MPVQIIVGVI 451 500 ENSTTRP00000014301/1-1575 LLYYILGISA LIGAAVIILL APVQYFVATK LSQAQRSTLE YSNERLKQTN ENSP00000374467/1-1581 LLYYILGVSA LIGAAVIILL APVQYFVATK LSQAQRSTLE YSNERLKQTN ENSBTAP00000043950/1-1585 LLYYILGISA LIGAAVIIVL APVQYFVATK LSQAQRSTLE YSNERLKQTN bmy_03608T0/1-952 ---------- ---------- ---------- ---------- ---------- BACU005622/1-1581 LLYYILGISA LIGAAVIILL APVQYFVATK LSQAQRSTLE YSNERLKQTN 501 550 ENSTTRP00000014301/1-1575 EMLRGIKLLK LYAWENIFRT RVEMTRRKEM TSLRAFAIYT SISIFMNTAI ENSP00000374467/1-1581 EMLRGIKLLK LYAWENIFRT RVETTRRKEM TSLRAFAIYT SISIFMNTAI ENSBTAP00000043950/1-1585 EMLRGIKLLK LYAWENIFRT RVEMTRKKEM TSLRAFAICT SISIFMNTAI bmy_03608T0/1-952 ---------- ---------- ---------- ---------- -----MNTAI BACU005622/1-1581 EMLRGIKLLK LYAWENIFRT LVEVTRKKEM TSLRAFAVYT SISIFMNTAI 551 600 ENSTTRP00000014301/1-1575 PIAAVLITFV GHVSFFKEAD FSPSVAFASL SLFHILVTPL FLLSSVVRST ENSP00000374467/1-1581 PIAAVLITFV GHVSFFKEAD FSPSVAFASL SLFHILVTPL FLLSSVVRST ENSBTAP00000043950/1-1585 PIAAVLITFV GHVSFFREAD FSPSVAFASL SLFHILVTPL FLLSSVVRST bmy_03608T0/1-952 PIAAVLITFV GHVSFFKEAD FSPSVAFASL SLFHILVTPL FLLSSVVRST BACU005622/1-1581 PIAAVLITFV GHVSFFKEAD FSPSVAFASL SLFHILVTPL FLLSSVVRST 601 650 ENSTTRP00000014301/1-1575 VKALVSVQKL SEFLSSAEIH EEQCAPREPE PRGQASKYQA VPLKVVNRKR ENSP00000374467/1-1581 VKALVSVQKL SEFLSSAEIR EEQCAPHEPT PQGPASKYQA VPLRVVNRKR ENSBTAP00000043950/1-1585 VKALVSVQKL SEFLSSAEIR EEQCAPREPA PQGQASKYQT VPLKVVNRKR bmy_03608T0/1-952 VKALVSVQKL SEFLSSAEIR EEQCAAREPE PRGQASKYQA VPLKVVNRKR BACU005622/1-1581 VKALVSVQKL SEFLSSAEIR EEQCAAREPE PRGQASKYQA VPLKVVNRKR 651 700 ENSTTRP00000014301/1-1575 PAWEDCRGIM GPLQSLTPSA DGDADNCCVQ IIGGFFTWTP DGIPTLSNIT ENSP00000374467/1-1581 PAREDCRGLT GPLQSLVPSA DGDADNCCVQ IMGGYFTWTP DGIPTLSNIT ENSBTAP00000043950/1-1585 PAREDCLGLT NPLQSLAPGT DGDADNCCVQ IIGGFFTWTP DGIPTLSNIT bmy_03608T0/1-952 PAWEDCRGLM GPLQSLTPGA DGDADNCCVQ IIGGFFTWTP DGIPTLSNIT BACU005622/1-1581 PAWEDRRGLV GPLQSLTPGA DGDADNCCVQ IIGGFFTWTP DGIPTLSNIT 701 750 ENSTTRP00000014301/1-1575 ICIPRGQLTM IVGQVGCGKS SLLLATLGEM QKVSGGVFWN SSLPDSETGE ENSP00000374467/1-1581 IRIPRGQLTM IVGQVGCGKS SLLLAALGEM QKVSGAVFW- SSLPDSEIGE ENSBTAP00000043950/1-1585 IRIPRGQLTM IVGQVGCGKS SLLLATLGEM QKLSGAVFWN SSLPDSETGE bmy_03608T0/1-952 ICIPRGQLTM IVGQVGCGKS SLLLATLGEM QKVSGAVFWN SSLPDGETGE BACU005622/1-1581 ICIPRGQLTM IVGQVGCGKS SLLLATLGEM QKVSGTVFWN SSLPDGETGE 751 800 ENSTTRP00000014301/1-1575 DP-SPERETA TDSDIRKRGP VAYASQKPWL LNATVEENIT FESPFNKQRY ENSP00000374467/1-1581 DP-SPERETA TDLDIRKRGP VAYASQKPWL LNATVEENII FESPFNKQRY ENSBTAP00000043950/1-1585 DPSSPERETV ADADVRKRGP VAYASQKPWL LNATVEENIT FESPFNKQRY bmy_03608T0/1-952 DP-SPERETA TDSDVRKRGP VAYASQKPWL LNATVEENIT FESPFNKQRY BACU005622/1-1581 DP-SPERETA TDSDVRKRGP VAYASQKPWL LNATVEENIT FESPFNKQRY 801 850 ENSTTRP00000014301/1-1575 KMVIEACSLQ PDIDILPHGD QTQIGERGIN LSGGQRQRIS VARALYQHTN ENSP00000374467/1-1581 KMVIEACSLQ PDIDILPHGD QTQIGERGIN LSGGQRQRIS VARALYQHAN ENSBTAP00000043950/1-1585 KMVIEACSLQ PDIDILPHGD QTQIGERGIN LSGGQRQRIS VARALYQHTN bmy_03608T0/1-952 KMVIEACSLQ PDIDILPHGD QTQIGER--- ---------- ---------- BACU005622/1-1581 KMVIEACSLQ PDIDILPHGD QTQIGERGIN LSGGQRQRIS VARALYQHTN 851 900 ENSTTRP00000014301/1-1575 VVFLDDPFSA LDVHLSDHLM QAGILELLRD DKRTVVLVTH KLQYLPHADW ENSP00000374467/1-1581 VVFLDDPFSA LDIHLSDHLM QAGILELLRD DKRTVVLVTH KLQYLPHADW ENSBTAP00000043950/1-1585 VVFLDDPFSA LDVHLSDHLM QAGILELLRD DRRTVVLVTH KLQYLPHADW bmy_03608T0/1-952 ----DDPFSA LDVHLSDHLM QAGILELLRD DKXTVVLVTH KLQYLPHADW BACU005622/1-1581 VVFLDDPFSA LDVHLSDHLM QAGILELLRD DKRTVVLVTH KLQYLPHADW 901 950 ENSTTRP00000014301/1-1575 IIAMKDGTIQ REGTLKDFQR SECQLFEHWK TLMNRQDQEL EKETIVERKA ENSP00000374467/1-1581 IIAMKDGTIQ REGTLKDFQR SECQLFEHWK TLMNRQDQEL EKETVTERKA ENSBTAP00000043950/1-1585 IIAMKDGTIQ REGTLKDFQR SECQLFEHWK TLMNRQDQEL EKETVMERKA bmy_03608T0/1-952 IIAMKDGTIQ REGTLKDFQR SECQLFEHWK TLMNRQDQEL EKETIVERKA BACU005622/1-1581 IIAMKDGTIQ REGTLKDFQR SECQLFEHWK TLMNRQDQEL EKETIVERKA 951 1000 ENSTTRP00000014301/1-1575 AEPPQGLPRA MSSRDGLLQD EEEEEEEAAE SEEEDNLSSV LHQRAKIPWR ENSP00000374467/1-1581 TEPPQGLSRA MSSRDGLLQD EEEEEEEAAE SEEDDNLSSM LHQRAEIPWR ENSBTAP00000043950/1-1585 TEPPQGLPRA MSSRDGLLQD EEEEEEEAAE SEEEDNLSSV LHQRAKIPWR bmy_03608T0/1-952 TEPLQGLPRA MSSRDGLLQD EEEEEGTDSG TG-------- ---RAKIPWR BACU005622/1-1581 TEPPQGLPRA MSSRDGLLQD EEEEEEEVAE SEEEDNLSSV LHQRAKIPWR 1001 1050 ENSTTRP00000014301/1-1575 ACSKYL-SGG ILLLSLLVFS QLLKXXXXXX XXXXXXXXXX XXXILSPTSR ENSP00000374467/1-1581 ACAKYLSSAG ILLLSLLVFS QLLKHMVLVA IDYWLAKWTD SALTLTPAAR ENSBTAP00000043950/1-1585 ACANYLSSAG TLLLSLLVFS QLLKHMVLVA IDYWLAKWTD SALTLSPMAR bmy_03608T0/1-952 ACTKYLSSAG ILLLSLLVFS QLLKHMVLVA IDYWLAKWTD SALSLNPMAR BACU005622/1-1581 ACTKYLSSAG ILLLSLLVFS QLLKHMVLVA IDYWLAKWTD SALSLNPMAR 1051 1100 ENSTTRP00000014301/1-1575 NCSLS--QEC SLDQTVYAMV FTVLCSLGIV LCLVTSITVE WTGLKVAKRL ENSP00000374467/1-1581 NCSLS--QEC TLDQTVYAMV FTVLCSLGIV LCLVTSVTVE WTGLKVAKRL ENSBTAP00000043950/1-1585 NCSLSQAQEC SLNQTGYAMV FTVLCSLGIV LCLITSVTVE WTGLKVAKRL bmy_03608T0/1-952 NCSLSQAQEC SLDQTVYAMV FTVLCSLGIV LCLVTSITVE WTGLKVAK-- BACU005622/1-1581 NCSLSQAQEC SLDQTVYAMV FTVLCSLGIV LCLVTSITVE WTGLKVAKRL 1101 1150 ENSTTRP00000014301/1-1575 HCSLLNQIIL APMRFFETTP LGSILNRFSS DCNTIDQHIP STLECLSRST ENSP00000374467/1-1581 HRSLLNRIIL APMRFFETTP LGSILNRFSS DCNTIDQHIP STLECLSRST ENSBTAP00000043950/1-1585 HRSLLNQIIL APMRFFETTP LGSILNRFSS DCNTIDQHIP STLECLSRST bmy_03608T0/1-952 ---------- ---RFFETTP LGSILNRFSS DCNTIDQHIP STLECLSRST BACU005622/1-1581 HCSLLNQIIL APMRFFETTP LGSILNRFSS DCNTIDQHIP STLECLSRST 1151 1200 ENSTTRP00000014301/1-1575 LLCVSALAVI SYVTPVFLVA LLPLAVVCYF IQKYFRVASR DLQQLDDTTQ ENSP00000374467/1-1581 LLCVSALAVI SYVTPVFLVA LLPLAIVCYF IQKYFRVASR DLQQLDDTTQ ENSBTAP00000043950/1-1585 LLCVSALAVI SYVTPVFLVA LLPLAVVCYF IQKYFRVASR DLQQLDDTTQ bmy_03608T0/1-952 LLCVSALAVI SYVTPVFLVA LLPLAVVCYF IQKYFRVAS- ---------- BACU005622/1-1581 LLCVSALAVI SYVTPVFLVA LLPLAVVCYF IQKYFRVASR DLQQLDDTTQ 1201 1250 ENSTTRP00000014301/1-1575 LPLLSHFAET VEGLTTIRAF RYEARFQQKL LEYTDSNNIA SLFLTAANRW ENSP00000374467/1-1581 LPLLSHFAET VEGLTTIRAF RYEARFQQKL LEYTDSNNIA SLFLTAANRW ENSBTAP00000043950/1-1585 LPLLSHFAET VEGLTTIRAF RYEARFQQKL LEYTDSNNIA SLFLTAANRW bmy_03608T0/1-952 ---------- ---------- RYEARFQQKL LEYTDSNNIA SLFLTAANRW BACU005622/1-1581 LPLLSHFAET VEGLTTIRAF RYEARFQQKL LEYTDSNNIA SLFLTAANRW 1251 1300 ENSTTRP00000014301/1-1575 LEVRMEYIGA CVVLIAAVTS ISNSLHRELS AGLVGLGLTY ALMXXXXXXX ENSP00000374467/1-1581 LEVRMEYIGA CVVLIAAVTS ISNSLHRELS AGLVGLGLTY ALMVSNYLNW ENSBTAP00000043950/1-1585 LEVRMEYIGA CVVLIAAVTS ISNSLHKELS AGLVGLGLTY ALMVSNYLNW bmy_03608T0/1-952 LE---EYIGA CVVLIAAVTS ISNSLHRELS AGLVGLGLTY ALMVSNYLNW BACU005622/1-1581 LE---EYIGA CVVLIAAVTS ISNSLHRELS AGLVGLGLTY ALMVSNYLNW 1301 1350 ENSTTRP00000014301/1-1575 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXDQG-IQI ENSP00000374467/1-1581 MVRNLADMEL QLGAVKRIHG LLKTEAESYE GLLAPSLIPK NWPDQGKIQI ENSBTAP00000043950/1-1585 MVRNLADMEL QLGAVKRIHG LLKTEAESYE GLLAPSLIPK NWPDQGKIQI bmy_03608T0/1-952 MVRNLADMEL QMGAVKRIHG LLKTEAERYE GLLAPSLIPK NWPDQGKIQI BACU005622/1-1581 MVRNLADMEL QMGAVKRIHG LLKTEAERYE GLLAPSLIPK NWPDQGKIQI 1351 1400 ENSTTRP00000014301/1-1575 QNLSVRYDSS LKPVLKHVNA LISPGQKIGI CGRTGSGKSS FSLAFFRMVD ENSP00000374467/1-1581 QNLSVRYDSS LKPVLKHVNA LIAPGQKIGI CGRTGSGKSS FSLAFFRMVD ENSBTAP00000043950/1-1585 QNLSVRYDSS LKPVLKHVNA LISPGQKIGI CGRTGSGKSS FSLAFFRMVD bmy_03608T0/1-952 QNLSVRYDSS LKPVLKHVNA LISPGQKIGI CGRTGSGKSS FSLAFFRMVD BACU005622/1-1581 QNLSVRYDSS LKPALKHVNA LISPGQKIGI CGRTGSGKSS FSLAFFRMVD 1401 1450 ENSTTRP00000014301/1-1575 MFEGRIIIDG IDIAKLPLHT LRSRLSIILQ DPVLFSGTIR FNLDPEKKCS ENSP00000374467/1-1581 TFEGHIIIDG IDIAKLPLHT LRSRLSIILQ DPVLFSGTIR FNLDPERKCS ENSBTAP00000043950/1-1585 MFEGRIIIDG IDIAKLPLHT LRSRLSIILQ DPVLFSGTIR FNLDPERKCS bmy_03608T0/1-952 MFEGRIIIDG IDIAKLPLHT LRSRLSIILQ EPVLFSGTIR FNLDPEKKCS BACU005622/1-1581 MFEGRIIIDG IDIAKLPLHT LRSRLSIILQ EPVLFSGTIR FNLDPEKKCS 1451 1500 ENSTTRP00000014301/1-1575 DSTLWEALEI AQLKLVVKAL PGGLDAIITE GGENFSQGQR QLFCLARAFV ENSP00000374467/1-1581 DSTLWEALEI AQLKLVVKAL PGGLDAIITE GGENFSQGQR QLFCLARAFV ENSBTAP00000043950/1-1585 DSTLWEALEI AQLKLVVKAL PGGLDAIITE GGENFSQGQR QLFCLARAFV bmy_03608T0/1-952 DSTLWEALEI AQLKLVVKAL PGGLDAIITE GGENFSQGQR QLFCLARAFV BACU005622/1-1581 DSTLWEALEI AQLKLVVKAL PGGLDAIITE GGENFSQGQR QLFCLARAFV 1501 1550 ENSTTRP00000014301/1-1575 RKTSIFIMDE ATASIDMATE NIMR---VMA FADRTVVTIA HRVHTILSAD ENSP00000374467/1-1581 RKTSIFIMDE ATASIDMATE NILQKVVMTA FADRTVVTIA HRVHTILSAD ENSBTAP00000043950/1-1585 RKTSIFIMDE ATASIDMATE NILQKVVMTA FADRTVVTIA HRVHTILSAD bmy_03608T0/1-952 RKTSIFIMDE ATASIDMATE NILQKVVMTA FADRTVVTIA HRVHTILSAD BACU005622/1-1581 RKTSIFIMDE ATASIDMATE NILQKVVMTA FADRTVVTIA HRVHTILSAD 1551 1600 ENSTTRP00000014301/1-1575 LVIVLKRGAI LEFDKPEKLL SQKDSVFASF VRADK ENSP00000374467/1-1581 LVIVLKRGAI LEFDKPEKLL SRKDSVFASF VRADK ENSBTAP00000043950/1-1585 LVIVLKRGAI LEFDKPEKLL SRKDSVFASF VRADK bmy_03608T0/1-952 LVIVLKRGAI LEFDKPEKLL SQKDSVFASF VRADK BACU005622/1-1581 LVIVLKRGAI LEFDKPEKLL SQKDSVFASF VRADK