KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:55:33 2014 Check: 00 .. Name: ENSP00000263817/1-1321 Len: 1381 Check: 5239 Weight: 1.00 Name: ENSTTRP00000005784/1-1323 Len: 1381 Check: 693 Weight: 1.00 Name: ENSBTAP00000043977/1-1324 Len: 1381 Check: 7970 Weight: 1.00 Name: bmy_15949T0/1-834 Len: 1381 Check: 1396 Weight: 1.00 Name: BACU010103/1-1326 Len: 1381 Check: 1046 Weight: 1.00 // 1 50 ENSP00000263817/1-1321 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005784/1-1323 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000043977/1-1324 ---------- ---------- ---------- ---------- ---------- bmy_15949T0/1-834 MEGPTRRERN GYGWQHKALE RVRKLCDSPQ WSPLFLLASS ISRSQHCWLW BACU010103/1-1326 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000263817/1-1321 ----MSDSVI LRSIKKFGEE NDGFESDKSY NNDKKSRLQD -EKKGDGVRV ENSTTRP00000005784/1-1323 ----MSDSVI LRSVKKSGED NHGFESDRS- EKNQWHRLED KKKKGGSSQI ENSBTAP00000043977/1-1324 ----MSDSVI LRSVKKFGED NHGFESDSSY NNDKKSKLQD -EKKGGSSQV bmy_15949T0/1-834 TAITMSDSVI LLSMKKSGED NHGFESDRSY DNDKKSKLED KKKKGGSSQV BACU010103/1-1326 ----MSDSVI LLSMKKSGED NHGFESDRSY DNDKKSKLED KKKKGGSSQV 101 150 ENSP00000263817/1-1321 GFFQLFRFSS STDIWLMFVG SLCAFLHGIA QPGVLLIFGT MTDVFIDYDV ENSTTRP00000005784/1-1323 GFFQLFRFSS KTDIWLMSVG SLCAFLHGVA YPGVLLIFGT MTDVSIEYDM ENSBTAP00000043977/1-1324 GFFRLFRFSS KIDIYLMSMG SLCALLHGVA YPGVLLIFGT MTDVFIEYDM bmy_15949T0/1-834 GFFQLFRFSS KTDIWLMFVG SLCAFLHGVA YPGVLLIFGT MTDVSIEYDM BACU010103/1-1326 GFFQLFRFSS ETDIWLMFVG SLCAFLHGVA YPGVLLIFGT MTDVSIEYDM 151 200 ENSP00000263817/1-1321 ELQELQIPGK ACVNNTIVWT NSSLNQNMTN GTRCGLLNIE SEMIKFASYY ENSTTRP00000005784/1-1323 ELQELKIPGK ACVNNTIVWT NSSLYQNVTN GTRCGFLDIE SEMVKFASYY ENSBTAP00000043977/1-1324 ELQELSIPGK ACVNNTIVWT NDSLNQNMTN GTRCGFLDIE SEMVNFASYY bmy_15949T0/1-834 ELQELKIPGK ACVNNTIVWT NGSLYQNVTN GTRCGFLDIE SEMVKFASYY BACU010103/1-1326 ELQELKIPGK ACVNNTIVWT NGSLYQNVTN GTRCGFLDIE SEMIKFASYY 201 250 ENSP00000263817/1-1321 AGIAVAVLIT GYIQICFWVI AAARQIQKMR KFYFRRIMRM EIGWFDCNSV ENSTTRP00000005784/1-1323 AGIAVAVLVT GYIQICFWVI AAARQIQKMR KLYFRRIMRM EIGWFDCNSV ENSBTAP00000043977/1-1324 AGVAVGVLVT GYFQICFWVI AAARQIQKMR KFYFRSIMRM EIGWFDCNSV bmy_15949T0/1-834 AGIAVAVLVT GYIQICFWVI AAARQIQKMR KLYFRRIMRM EIGWFDCNSV BACU010103/1-1326 AGIAVAVLVT GYIQICFWVI AAARQIQKMR KLYFRRIMRM EIGWFDCNSV 251 300 ENSP00000263817/1-1321 GELNTRFSDD INKINDAIAD QMALFIQRMT STICGFLLGF FRGWKLTLVI ENSTTRP00000005784/1-1323 GELNTRFSXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000043977/1-1324 GELNTRFSDD INKVNDAIAD QMGIFIQRMT TSIFGFLMGF YQGWKLTLVI bmy_15949T0/1-834 GELNTRFSDD INKINDAIAD QMAIFIQRMT TSVCGFLLGF YRGWKLTLVI BACU010103/1-1326 GELNTRFSDD INKINDAIAD QMAIFIQRMT TSVCGFLLGF YRGWKLTLVI 301 350 ENSP00000263817/1-1321 ISVSPLIGIG AATIGLSVSK FTDYELKAYA KAGVVADEVI SSMRTVAAFG ENSTTRP00000005784/1-1323 XXXXXXXXXX XXXXXXSVSK FTDHELRAYA KAGAVADEVI SSIPTVAAYG ENSBTAP00000043977/1-1324 ISVSPLIGIG AAIIGLSVSR FTDYELRAYA KAGSVADEVI SSIRTVAAFG bmy_15949T0/1-834 ISVSPLIGIG AAIIGLSVSK FTDHELRAYA KAGAVADEVI SSIPTVAAYG BACU010103/1-1326 ISVSPLIGIG AAIIGLSVSK FTDHELRAYA KAGAVADEVI SSIPTVAAYG 351 400 ENSP00000263817/1-1321 GEKREVERYE KNLVFAQRWG IRKGIVMGFF TGFVWCLIFL CYALAFWYGS ENSTTRP00000005784/1-1323 GEEKEVERYE KNLVFAQRWG IRKGIVMGFF TGFMWCLIFL CYALAFWYGS ENSBTAP00000043977/1-1324 GEKKEVERYE KNLVFAQRWG IRKGIVMGFF TGFMWCLIFL CYALAFWYGS bmy_15949T0/1-834 GEKKEVERYE KNLVFAQRWG IRKGIVMGFF TGFMWCLIFL CYALAFWYGS BACU010103/1-1326 GEKKEVERYE KNLVFAQRWG IRKGIVMGFF TGFMWCLIFL CYALAFWYGS 401 450 ENSP00000263817/1-1321 TLVLDEGEYT PGTLVQIFLS VIVGALNLGN ASPCLEAFAT GRAAATSIFE ENSTTRP00000005784/1-1323 RLVLDDGEYT AGTLVQXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000043977/1-1324 KLVLDDEEYT PGVLVQIFLS VIVGALNLGN ASSCLEAFAA GRAAAASIFE bmy_15949T0/1-834 RLVLDDGEYT AGTLVQIFLS VIVGALNLGN ASSCLEAFAA GRAAATSIFE BACU010103/1-1326 RLVLDDGEYT AGTLVQIFLS VIVGALNLGN ASSCLEAFAA GRAAATSIFE 451 500 ENSP00000263817/1-1321 TIDRKPIIDC MSEDGYKLDR IKGEIEFHNV TFHYPSRPEV KILNDLNMVI ENSTTRP00000005784/1-1323 XXXXKPLIDC MSEDGYKLDR IKGEIAFHNV TFHYPSRPEV KILNNLSMVI ENSBTAP00000043977/1-1324 TIDRKPLIDC MSEDGYKLDR IKGEIEFHNV TFHYPSRPEV KILNKLSTVI bmy_15949T0/1-834 TMDRKPLIDC MSEDGYKLDR IKGEIEFHNV TFHYPSRPEV KILNNLSMVI BACU010103/1-1326 TMDRKPLIDC MSEDGYKLDR IKGEIEFHNV TFHYPSRPEV KILNNLSMVI 501 550 ENSP00000263817/1-1321 KPGEMTALVG PSGAGKSTAL QLIQRFYDPC EGMVTVDGHD IRSLNIQWLR ENSTTRP00000005784/1-1323 KSGEMTAMVG SSGAGKSTAL QLIQRFYDPS EGMVTLDGHD IRSLNIQWLR ENSBTAP00000043977/1-1324 KSGEVTAMVG SSGAGKSTAL QLIQRFYDPT EGMVTLDGHD IRSLNIQWLR bmy_15949T0/1-834 KSGEMTAMVG SSGAGKSTAL QLIQRFYDPS EGMVTLDGHD IRSLNIQWLR BACU010103/1-1326 KSGEMTAMVG SSGAGKSTAL QLIQRFYDPS EGMVTLDGHD IRSLNIQWLR 551 600 ENSP00000263817/1-1321 DQIGIVEQEP VLFSTTIAEN IRYGREDATM EDIVQAAKEA NAYNFIMDLP ENSTTRP00000005784/1-1323 AQIGIVEQEP VLFSTTIAEN IRYGREDATM EDIVRAAKEA NAYSFIMDLP ENSBTAP00000043977/1-1324 AQIGIVEQEP VLFSTTIAEN IRYGRKDATM EDIVRAAKEA NAYNFIMDLP bmy_15949T0/1-834 AQIGIVEQEP VLFSTTIAEN IRYGREDATM EDIVRAAKEA NAYSFIMDLP BACU010103/1-1326 AQIGIVEQEP VLFSTTIAEN IRYGREDATM EDIVRAAKEA NAYSFIMDLP 601 650 ENSP00000263817/1-1321 QQFDTLVGEG GGQMSGGQKQ RVAIARALIR NPKILLLDMA TSALDNESEA ENSTTRP00000005784/1-1323 QQFDTLVGEG GGQMSGGQKQ RLAIARALVR NPKILLLDMA TSALDNESEA ENSBTAP00000043977/1-1324 QQFDTLVGEG GGQMSGGQKQ RIAIARALVR NPKILLLDMA TSALDNESEA bmy_15949T0/1-834 QQFDTLVGEG GGQMSGGQKQ RLAIARALVR NPKILLLDMA TSALDNESEA BACU010103/1-1326 QQFDTLVGEG GGQMSGGQKQ RLAIARALVR NPKILLLDMA TSALDNESEA 651 700 ENSP00000263817/1-1321 MVQEVLSKIQ HGHTIISVAH RLSTVRAADT IIGFEHGTAV ERGTHEELLE ENSTTRP00000005784/1-1323 MVQEALSKVQ HGLTIISVAH RLSTVRAADV IIGFERGTAV ERGTHEELLE ENSBTAP00000043977/1-1324 MVQEALSKVQ HGHTIISVAH RLSTIRTADV IIGFEHGTAV ERGTHEELLE bmy_15949T0/1-834 MVQEALSKVQ HGHTIISVAH RLSTVRAADV IIGFERGTAV ERGTHEELLE BACU010103/1-1326 MVQEALSKVQ HGHTIISVTH RLSTVRAADV IIGFERGTAV ERGTHEELLE 701 750 ENSP00000263817/1-1321 RKGVYFTLVT LQSQGNQALN EEDI--KDAT EDDMLAR--T FSRGSYQDSL ENSTTRP00000005784/1-1323 RKGVYFTLMT LQSQGDQAFN EKDI--KDET EDTLLERKQT FSRGSYQASL ENSBTAP00000043977/1-1324 RKGVYFTLMT LQSQGDQAFN EKDI--KDET EDALLERKQT FSRGSYQASL bmy_15949T0/1-834 RKGVYFTLMT LQR------- ------KDET EDTLLERKQT FSRGSYQASL BACU010103/1-1326 RKGVYFTLMT LQSQGDQAFN EKDIKGKDET EDTLLERKQT FSRGSYQASL 751 800 ENSP00000263817/1-1321 RASIRQRSKS QLSYLVHEPP LAVVDHKSTY EEDRKDKDIP VQEEVEPAPV ENSTTRP00000005784/1-1323 RASIRQRSKS QLSYLGPEPP LALVDHKSTY EEDRKDKNIP VEEEIEPAPV ENSBTAP00000043977/1-1324 RASIRQRSKS QLSYLGHESS LALVDHKSTH EQDRKDKNIP VEEEIEPAPV bmy_15949T0/1-834 RASIRQRSKS QLSYLGPEPP LALVDHKSTY EEDRKVR--- ---------- BACU010103/1-1326 RASIRQRSKS QLSYLGPEPP LALVDHKSTY EEDRKDKNIP VEEEIEPAPV 801 850 ENSP00000263817/1-1321 RRILKFSAPE WPYMLVGSVG AAVNGTVTPL YAFLFSQILG TFSIPDKEEQ ENSTTRP00000005784/1-1323 RRILKVNAPE WPYMLVGAVG AAVNGTVTPF YAFFFSQILG IFSVPDKEEQ ENSBTAP00000043977/1-1324 RRILRLNARE WPYMLVGSVG AAVNGTVTPM YAFLFSQILG TFSIPDKEEQ bmy_15949T0/1-834 ---------- ---------- ---------- ---------- ---------- BACU010103/1-1326 RRILKVNAPE WPYMLVGAVG AAVNGTVTPF YAFFFSQILG TFSIPDKEEQ 851 900 ENSP00000263817/1-1321 RSQINGVCLL FVAMGCVSLF TQFLQGYAFA KSGELLTKRL RKFGFRAMLG ENSTTRP00000005784/1-1323 RSQIHGVCLF FVAIGCVSFC TQFLQGYAFA KSGELLTKRL RKLGFRAMLG ENSBTAP00000043977/1-1324 RSQIHGVCLL FVAIGCLSLC TQFLQGYAFA KSGELLTKRL RKLGFRAMLG bmy_15949T0/1-834 ---------- ---------- ---------- ---------- ----YRSLMG BACU010103/1-1326 RSQIHGVCLL FVAIGCLSFC TQFLQGYAFA KSGELLTKRL RKLGFRAMLG 901 950 ENSP00000263817/1-1321 QDIAWFDDLR NSPGALTTRL ATDASQVQGA AGSQIGMIVN SFTNVTVAMI ENSTTRP00000005784/1-1323 QDIGWFDDLR NSPGALTTRL ATDASQVQGA AGSQIGMMVN SFTNITVAMI ENSBTAP00000043977/1-1324 QDIGWFDDLR NSPGALTTRL ATDASQVQGA TGSQIGMMVN AFTNIAVAMI bmy_15949T0/1-834 G--------- ---------- ---------- ---------- ---------- BACU010103/1-1326 QDIGWFDDLR NSPGALTTRL ATDASQVQGA AGSQIGMMVN AFTNITVAMI 951 1000 ENSP00000263817/1-1321 IAFSFSWKLS LVILCFFPFL ALSGATQTRM LTGFASRDKQ ALEMVGQITN ENSTTRP00000005784/1-1323 IAFFFSWKLS LVIVCFFPFL ALSGAIQTKM LMGFATHDKQ ALEVAGQITN ENSBTAP00000043977/1-1324 IAFLFSWKLS LVIVCFFPFL ALSGAIQTRM LMGFATHDKE SLEVAGQITN bmy_15949T0/1-834 ------WKKS LLETTVCPL- ---------- ---------- ---------- BACU010103/1-1326 IAFFFSWKLS LVIVCFFPFL ALSGAIQTKM LMGFATHDKQ AMEVAGQITN 1001 1050 ENSP00000263817/1-1321 EALSNIRTVA GIGKERRFIE ALETELEKPF KTAIQKANIY GFCFAFAQCI ENSTTRP00000005784/1-1323 EALSNIRTVA GIGKERQFIE VFETELEKPY KTAIRKANVY GFCFGFSQCI ENSBTAP00000043977/1-1324 EALSNIRTVA GIGKERQFIE AFEAELEKPY KTALRKANIY GLCFGFSQCI bmy_15949T0/1-834 ---------- ---------- -SEDEFSRPL SSII------ ---------- BACU010103/1-1326 EALNNIRTVA GIGKERQFIE VFETELEKPY KTAIRKANVY GFCFGFSQCI 1051 1100 ENSP00000263817/1-1321 MFIANSASYR YGGYLISNEG LHFSYVFRVI SAVVLSATAL GRAFSYTPSY ENSTTRP00000005784/1-1323 VFVANSASYR YGGYLIPNEG LHFSYVFRVI SSVVLSATAL GRAFSYTPSY ENSBTAP00000043977/1-1324 VFVANSASYR YGGYLIPNEG LHFSYVFRVI SSVVLSATAL GRASSYTPSY bmy_15949T0/1-834 ---------- ---------- ---------- ---------- ---------- BACU010103/1-1326 VFVANSASYR YGGYLIPNEG LHFSYVFRVI SSVVLSATAL GRASSYTPSY 1101 1150 ENSP00000263817/1-1321 AKAKISAARF FQLLDRQPPI SVYNTAGEKW DNFQGKIDFV DCKFTYPSRP ENSTTRP00000005784/1-1323 AKAKISAARF FQLLDRQPTI KVYSSAGERW DNFQGQIDFV DCKFTYPSRP ENSBTAP00000043977/1-1324 AKAIISAARF FQLLDRRPAI NVYSSAGERW DNFRGQIDFV DCKFTYPSRP bmy_15949T0/1-834 ---------- ---------- ---SLSQTKW ET-------- ------PLRP BACU010103/1-1326 AKAKISAARF FQLLDRQPTI NVYSSAGERW DNFQGQIDFV DCKFTYPSRP 1151 1200 ENSP00000263817/1-1321 DSQVLNGLSV SISPGQTLAF VGSSGCGKST SIQLLERFYD PDQGKVMIDG ENSTTRP00000005784/1-1323 DIQVLNGLSV SVGPGQTLAF VGSSGCGKST SIQLLERFYD PDQGKVMIDG ENSBTAP00000043977/1-1324 DVQVLNGLSV SVGPGKTLAF VGSSGCGKST SIQLLERFYD PDQGKVMIDG bmy_15949T0/1-834 D--------- ---------- -GNS------ ------KFY- ---------- BACU010103/1-1326 DIQVLNGLSV SVGPGQTLAF VGSSGCGKST SIQLLERFYD PDQGKVMIDG 1201 1250 ENSP00000263817/1-1321 HDSKKVNVQF LRSNIGIVSQ EPVLFACSIM DNIKYGDNTK EIPMERVIAA ENSTTRP00000005784/1-1323 HDSKNVNVQF LRSKIGIVSQ EPVLFACSIV DNIKYGDNTK EIPTEKVIEA ENSBTAP00000043977/1-1324 HDSKNVNIQF LRSNIGIVSQ EPVLFACSIM DNIKYGDNTK EIPMEKVIEA bmy_15949T0/1-834 ---------- ---------- --IMF----- ---------- ---------- BACU010103/1-1326 HDTKNVNVQF LRSKIGIVSQ EPVLFACSIV DNIKYGDNTK EIPTEKVIEA 1251 1300 ENSP00000263817/1-1321 AKQAQLHDFV MSLPE-KYET NVGSQGSQLS RGEKQRIAIA RAIVRDPKIL ENSTTRP00000005784/1-1323 AKQAQLHDFV MSLPE-KYET NVGSQGSQLS RGEKQRIAIA RAIIRDPKIL ENSBTAP00000043977/1-1324 AKQAQLHDFV MSLPEVEYET NVGSQGSQLS RGEKQRIAIA RAIVRDPKIL bmy_15949T0/1-834 ---------- ---------- ---------- ---------- ---------- BACU010103/1-1326 AKQAQLHDFV MSLPE-KYET NVGSQGSQLS RGEKQRIAIA RAIVRDPKIL 1301 1350 ENSP00000263817/1-1321 LLDEATSALD TESEKTVQVA LDKAREGRTC IVIAHRLSTI QNADIIAVMA ENSTTRP00000005784/1-1323 LLDEATSALD TESEKTVQVA LDKAREGRTC IVIAHRLSTI RNSDIIAVMS ENSBTAP00000043977/1-1324 LLDEATSALD TESEKTVQVA LDKAREGRTC IVIAHRLSTI RNSDIIAVMS bmy_15949T0/1-834 ---------- ---------- ---------- ---------- ---------- BACU010103/1-1326 LLDEATSALD TESEKTVQVA LDKAREGRTC IVIAHRLSTI RNSDIIAVMS 1351 1400 ENSP00000263817/1-1321 QGVVIEKGTH EELMAQKGAY YKLVTTGSPI S ENSTTRP00000005784/1-1323 QGIVIEKGTH EELMAQKGAY YKLVTTGAPI S ENSBTAP00000043977/1-1324 QGIVIEKGTH EELMAQKGAY YKLVTTGAPI S bmy_15949T0/1-834 ---------- ---------- YMVF------ - BACU010103/1-1326 QGIVIEKGTH EELMAQQGAY YKLVTTGAPI S