KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:55:38 2014 Check: 00 .. Name: BACU019901/1-209 Len: 252 Check: 1440 Weight: 1.00 Name: ENSP00000284440/1-223 Len: 252 Check: 2862 Weight: 1.00 Name: ENSTTRP00000011470/1-222 Len: 252 Check: 9361 Weight: 1.00 Name: bmy_16454T0/1-223 Len: 252 Check: 2362 Weight: 1.00 Name: ENSBTAP00000044075/1-252 Len: 252 Check: 8934 Weight: 1.00 // 1 50 BACU019901/1-209 ---------P VSSPQVLARL GVAGQWRFED VLGLEEESLG SVPAPACALL ENSP00000284440/1-223 MQLKPMEINP EMLNKVLSRL GVAGQWRFVD VLGLEEESLG SVPAPACALL ENSTTRP00000011470/1-222 MQLKPMEINP EXXXXVLARL GVAGQWRFED VLGLEEESLG SVPAPACALL bmy_16454T0/1-223 MQLKPMEINP EMLNKVLARL GVAGQWRFED VLGLEEESLG SVPAPACALL ENSBTAP00000044075/1-252 MQLKPMEINP EMLNKVLTRL GVAGQWRFED VLGLEEESLG SVPAPACALL 51 100 BACU019901/1-209 LLFPLTA--- ---------- ---------- ------QHEN FRKKQIEVLK ENSP00000284440/1-223 LLFPLTA--- ---------- ---------- ------QHEN FRKKQIEELK ENSTTRP00000011470/1-222 LLFPLTA--- ---------- ---------- ------QHEN FRKKQIEELK bmy_16454T0/1-223 LLFPLTA--- ---------- ---------- ------QHEN FRKKQIEELK ENSBTAP00000044075/1-252 LLFPLTAQRC FKLGREAASR FHHPDYPGRL FILLVSQHEN FRKKQIEELK 101 150 BACU019901/1-209 GQEVSPKVYF MKQTIGNSCG TIGLIHAVAN NQDKLEF--- -VLKQFLSET ENSP00000284440/1-223 GQEVSPKVYF MKQTIGNSCG TIGLIHAVAN NQDKLGFEDG SVLKQFLSET ENSTTRP00000011470/1-222 GQEVSPKVYF MKQTIGNSCG TIGLIHAVAN NQDKLEFEDG SVLKQFLSET bmy_16454T0/1-223 GQEVSPKVYF MKQTIGNSCG TIGLIHAVAN NQDKLEFEDG SVLKQFLSET ENSBTAP00000044075/1-252 GQEVSPKVYF MKQTIGNSCG TIGLIHAVAN NQDKLEFEDG SVLKQFLSET 151 200 BACU019901/1-209 EKLSPEDRAK CFEKNEAIQA AHDAVAQEGQ CRVDDKVNFH FILFNNVDGH ENSP00000284440/1-223 EKMSPEDRAK CFEKNEAIQA AHDAVAQEGQ CRVDDKVNFH FILFNNVDGH ENSTTRP00000011470/1-222 EKLSPEDRAK CFEKNEAIQA AHDAVAQEGQ CRVDDKVNFH FILFNNVDGH bmy_16454T0/1-223 EKLSPEDRAK CFEKNEAIQA AHDAVAQEGQ CRVDDKVNFH FILFNNVDGH ENSBTAP00000044075/1-252 EKLSPEDRAK CFEKNEAIQA AHDAVAQEGQ CRVDDKVNFH FILFNNVDGH 201 250 BACU019901/1-209 LYELDGRMPF PVNHGISSED SLLQDAAKVC REFTEREQGE VRFSAVALCK ENSP00000284440/1-223 LYELDGRMPF PVNHGASSED TLLKDAAKVC REFTEREQGE VRFSAVALCK ENSTTRP00000011470/1-222 LYELDGRMPF PVNHGASSEG SLLQDAAKVC REFTEREQGE VRFSAVALCK bmy_16454T0/1-223 LYELDGRMPF PVNHGTSSED SLLQDAAKVC REFTEREQGE VRFSAVALCK ENSBTAP00000044075/1-252 LYELDGRMPF PVNHGTSSED SLLQDAAKVC REFTEREQGE VRFSAVALCK 251 300 BACU019901/1-209 A- ENSP00000284440/1-223 AA ENSTTRP00000011470/1-222 A- bmy_16454T0/1-223 AA ENSBTAP00000044075/1-252 AA