KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:55:42 2014 Check: 00 .. Name: ENSTTRP00000001645/1-837 Len: 847 Check: 2119 Weight: 1.00 Name: ENSP00000313953/1-843 Len: 847 Check: 6213 Weight: 1.00 Name: bmy_05239T0/1-621 Len: 847 Check: 856 Weight: 1.00 Name: ENSBTAP00000044110/1-847 Len: 847 Check: 5102 Weight: 1.00 Name: BACU014592/1-847 Len: 847 Check: 1148 Weight: 1.00 // 1 50 ENSTTRP00000001645/1-837 ----MWTPEL ALLRGFPTEA ELQQWKQEGV AGSESGSFLQ LLLEGNYEAI ENSP00000313953/1-843 ----MWTPEL AILRGFPTEA ERQQWKQEGV VGSESGSFLQ LLLEGNYEAI bmy_05239T0/1-621 MSGVMWTPEL ALLRGFPTEA ELQQWKQEGV AGSG------ LMM---YQII ENSBTAP00000044110/1-847 MSGVMWTPEL AVLRGFPTQA ERQQWKQEGV ASLESGSFLQ LLLEGNYKAI BACU014592/1-847 MSGVMWTPEL ALLRGFPTEA ELQQWKQEGV AGSEIGSFLQ LLLEGNYEAI 51 100 ENSTTRP00000001645/1-837 FLNSLTQSIL NSATMTEEKI DSYLEKQIVT FLDYSTDLDK TRRQQLIFLL ENSP00000313953/1-843 FLNSMTQNIF NSTTTAEEKI DSYLEKQVVT FLDYSTDLDT TERQQLIFLL bmy_05239T0/1-621 YVRVSVQRTI EN-------- ---------- ---------- ---------- ENSBTAP00000044110/1-847 LLNSLTQSIL NSATITEEKI DSYLEKQIVT FLDDSAELDK IRRQQKILLL BACU014592/1-847 FLNSLTQSIL NSATMTEERI DSYLEKQIAT FLDYSTDLDK TRRQQLIFLL 101 150 ENSTTRP00000001645/1-837 GVSSLQLFVQ XXXXXXXXXX XXXXXXXXVL LQQ-SEVKGL DALILSLLIL ENSP00000313953/1-843 GVSSLQLFVQ SNWTGPPVDL HPQDFLSSVL FQQFSEVKGL DAFVLSLLTL bmy_05239T0/1-621 ---------- ---------- ---------- ----EKVKGL DALVLSLLIL ENSBTAP00000044110/1-847 GVSSLQLFVQ SNWTGPLVDL HPQDFLPSVL FQQFSEIKAL DAFLLSLLVL BACU014592/1-847 GVSSLQLFVQ SNWTGPLVDL HPQDFLPSVL FQQFSEVKGL DALVLSLLIL 151 200 ENSTTRP00000001645/1-837 DGESIYSLTL KPILLLLARI SLVNVRHRLT AIQSLPWWTL RCVNIHQQLL ENSP00000313953/1-843 DGESIYSLTS KPILLLLARI ILVNVRHKLT AIQSLPWWTL RCVNIHQHLL bmy_05239T0/1-621 DGESVYSLTL NPILLLLARI SLVNVRHRLT AIQSLPWWTL RCVNVHQQLL ENSBTAP00000044110/1-847 DGESIYSLTT KPILLLLARI ILVNIRHKLT AIQSLPWWTL RCVNIHQQLL BACU014592/1-847 DGESIYSLTL NPILLLLARI SLVNVRHRLT AIQSLPWWTL RCVNVHQQLL 201 250 ENSTTRP00000001645/1-837 EERSPQLFAL AEDCIDQVMK LEXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000313953/1-843 EERSPLLFTL AENCIDQVMK LQNLFVDDSG RYLAIQFHLE CAYVFLYYYE bmy_05239T0/1-621 EERSPQLLAL AEDCIDRVMK LEDLFVDDSG RYLAVQFHLE CAYIFLYYYE ENSBTAP00000044110/1-847 EERSPQLFAL AEDCIDQVMK LEDLFVDDSG QCLAVQFHLE CAYIFLYYYE BACU014592/1-847 EERSPQLLAL AEDCIDRVMK LEGLFVDDSG RYLAVQFHLE CAYIFLYYYE 251 300 ENSTTRP00000001645/1-837 XXXXXXXXXX XXXXXXXXXX XXXALGKRTR FQ-NYVP-LI LDV-REGAVF ENSP00000313953/1-843 YRKAKDQLDI AKDISQLQID LTGALGKRTR FQENYVAQLI LDVRREGDVL bmy_05239T0/1-621 YKKAKDQFNI AKDICRLQID LTGALGKRTW FQENYVAQLI LDVRREGAVF ENSBTAP00000044110/1-847 YKKAKDQFSI AKDICRLQIG LTGALGKRTR FQENYVAQLI LDVRREGTVF BACU014592/1-847 YKKAKDQFSI AKDICRLQID LTGALGKRTW FQENYVAQLI LDVRREGAVF 301 350 ENSTTRP00000001645/1-837 SNY-FTPAPT PXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000313953/1-843 SNCEFTPAPT PQEHLTKNLE LNDDTILNDI KLADCEQFQM PDLCAEEIAI bmy_05239T0/1-621 SNYEFTPAPT PQEYLTKNIE LNDDTVLNEI KLADCEQFQM PDLCAEELAV ENSBTAP00000044110/1-847 SNCEFTPAPT PQEYLTKNLE LNDDTVLNEI KLADCEQFQM PDLCAEELAV BACU014592/1-847 PNYEFTPAPT PQEYLTKNIE LNDDTVLNEI KLADCEQFQM PDLCAEELAV 351 400 ENSTTRP00000001645/1-837 XXXXXTNLQK NNPVHKLTEE ELLAFTSCLL SQPKFWAIQT SALILRTKLE ENSP00000313953/1-843 ILGICTNFQK NNPVHTLTEV ELLAFTSCLL SQPKFWAIQT SALILRTKLE bmy_05239T0/1-621 ILGICTNLQK NNPVHKLTEE ELLAFTSS-- ---------- ---------- ENSBTAP00000044110/1-847 ILGICTDFQK NNPVHKLTEE ELLAFTSCLL SQPKFWAIQT SALILRTKLE BACU014592/1-847 ILGICTNLQK NNPVHKLTEE ELLAFTSCLL SQPKFWAIQT SALILRTKLE 401 450 ENSTTRP00000001645/1-837 RGSTRRVERA MRQTQALADQ FEDKTTSVLE RLKIFYCCQV PPHWAIQRQL ENSP00000313953/1-843 KGSTRRVERA MRQTQALADQ FEDKTTSVLE RLKIFYCCQV PPHWAIQRQL bmy_05239T0/1-621 --GEKNFERV L-----IAGD PESQ------ ---------- --------DL ENSBTAP00000044110/1-847 RGSTRRVERA MRQTQALADQ FEDKTASVLE RLKIFYCCQV PPHWAIQRQL BACU014592/1-847 RGSIRRVERA MRQTQALADQ FEDKTTSVLE RLKIFYCCQV PPHWAIQRQL 451 500 ENSTTRP00000001645/1-837 ASLLFELGCT SSALQIFEKL EMWEDVVICY ERAGQHGKXX XXXXXXXXXX ENSP00000313953/1-843 ASLLFELGCT SSALQIFEKL EMWEDVVICY ERAGQHGKAE EILRQELEKK bmy_05239T0/1-621 PSML------ ---LDTVEEI KVNLQVVVIF ---------- ---------- ENSBTAP00000044110/1-847 AGLLFELGCT NSALQIFEKL EMWEDVVICY ERAGQHGKAE EILRQELEKK BACU014592/1-847 ASLLFELGCT SSALQIFEKL EMWEDVVICY ERAGQHGKAE EILRQELEKK 501 550 ENSTTRP00000001645/1-837 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXS ARAQRSKGLL HLRSKEFKEC ENSP00000313953/1-843 ETPSLYCLLG DVLGDHSCYD KAWELSRYRS ARAQRSKALL HLRNKEFQEC bmy_05239T0/1-621 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000044110/1-847 ETPSLYCLLG DVLRDHSYYD QAWELSRHRS ARAQRSKGLL HLRSREFKEC BACU014592/1-847 ETPSLYCLLG DVLREHSYYD QAWELSQHRS ARAQRSKGLL HLRSKEFKEC 551 600 ENSTTRP00000001645/1-837 VECFERSVKI NPMQLGVWFS LGCAYLALED YGGSARAFQR CVTLEPDNAE ENSP00000313953/1-843 VECFERSVKI NPMQLGVWFS LGCAYLALED YQGSAKAFQR CVTLEPDNAE bmy_05239T0/1-621 ---------- ---KLGVWFS LGCAYLALED YGGSARAFQR CVTLEPDNAE ENSBTAP00000044110/1-847 VECFERSLKI NPMQLGVWFS LGCAYLALED YGGSARAFQR CVTLEPDNAE BACU014592/1-847 VECFERSVKI NPMQLGVWFS LGCAYLALED YGGSARAFQR CVTLEPDNAE 601 650 ENSTTRP00000001645/1-837 AWNNLSTSYI RLKQKVKAFR TLQEALKCNY EHWQIWENYI LTSTDIGEFS ENSP00000313953/1-843 AWNNLSTSYI RLKQKVKAFR TLQEALKCNY EHWQIWENYI LTSTDVGEFS bmy_05239T0/1-621 AWNNLSTSYI RLKQKVKAFR TLQEALKCNY EHWQIWENYI LTSTDIGEFS ENSBTAP00000044110/1-847 AWNNLSTSYI RLKQKVKAFR TLQEALKCNY EHWQIWENYI LTSTDVGEFS BACU014592/1-847 AWNNLSTSYI RLKQKVKAFR TLQEALKCNY EHWQIWENYI LTSTDIGEFS 651 700 ENSTTRP00000001645/1-837 EAINAYHRLL DLRDKYKDTQ GLTILVRAVM DGMADRSGDV ASG-RGKLQE ENSP00000313953/1-843 EAIKAYHRLL DLRDKYKDVQ VLKILVRAVI DGMTDRSGDV ATGLKGKLQE bmy_05239T0/1-621 EAIKAYHRLL DLRDKYKDTQ VLTILVRAVM DGMADRSGDV APGLRGKLQE ENSBTAP00000044110/1-847 EAIKAYHRLL DLRDKYKDTQ VLKILVRAVM DGMADRSGDV ATGLRGKLQE BACU014592/1-847 EAIKAYHRLL DLRDKYKDTQ VLTILVRAVM DSTTDRSGNV APGLRGKLQE 701 750 ENSTTRP00000001645/1-837 LFGRVTSRVT NDGEIWRLYA QVCGNGQSDK PDENEKAFQY LSKAYKCDTQ ENSP00000313953/1-843 LFGRVTSRVT NDGEIWRLYA HVYGNGQSEK PDENEKAFQC LSKAYKCDTQ bmy_05239T0/1-621 LFGRVTSRVT NDGEIWRLYA QVCGNGQSDK PDENEKAFQY LSKAYKCDTQ ENSBTAP00000044110/1-847 LFGRVTSRVT NDGEIWRLYA QVYGNGQSDK PDENEKAFQY LSKAYKCDTQ BACU014592/1-847 LFGRVTSRVT NDGEIWRLYA QVCGNGQSDK PDENEKAFQY LSKAYKCDTQ 751 800 ENSTTRP00000001645/1-837 SSCWEKDITS FKEVVQRALG LAHXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000313953/1-843 SNCWEKDITS FKEVVQRALG LAHVAIKCSK NKSSSQEAVQ MLSSVRLNLR bmy_05239T0/1-621 SSCWEKDITS FKEVVQRALE LAHVAIKCSK NKSSPQEAVQ VLSSVRLNLR ENSBTAP00000044110/1-847 SSCWEKNITS FKEVVQRALG LAHVAIKCSK NKSSPQEAIQ VLSSVRLNLR BACU014592/1-847 SSCWEKDITS FKEVVQRALG LAHVAIKCSK NKSSPQEAVQ VLSSVRLNLR 801 850 ENSTTRP00000001645/1-837 XXXXXXXQLF TDVVSGEISR ELADETAAMD TLVTELQDLS NQFRNQY ENSP00000313953/1-843 GLLSKAKQLF TDVATGEMSR ELADDITAMD TLVTELQDLS NQFRNQY bmy_05239T0/1-621 GLLSKAKQLF TDVVSGEISR ELADETAAMD TLVTELQDLS NQFRNQY ENSBTAP00000044110/1-847 GLLSKAKQLF TDAASGEIAR ELADEIAAMD TLVTELQDLS NQFRNQY BACU014592/1-847 GLLSKAKQLF TDVVSGEISR ELADETAAMD TLVTELQDLS NQFRNQY