KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:55:42 2014 Check: 00 .. Name: ENSP00000236147/1-385 Len: 440 Check: 4539 Weight: 1.00 Name: ENSBTAP00000044113/1-371 Len: 440 Check: 1895 Weight: 1.00 Name: bmy_03694T0/1-368 Len: 440 Check: 5970 Weight: 1.00 Name: ENSTTRP00000003829/1-384 Len: 440 Check: 4522 Weight: 1.00 // 1 50 ENSP00000236147/1-385 MGCRRTREGP SKAMIFPWKC QSTQRDLWNI FKLWGWTMLC CDFLAHHGTD ENSBTAP00000044113/1-371 ---------- ---MLCPWKC QNAQRGLWNV FKLWVWIMLC CDFFAHHGTD bmy_03694T0/1-368 ---------- ---MFLS--C GPA------- --------LC SVV------- ENSTTRP00000003829/1-384 -CYRRTTEGR SKAMIFPWKC QSAQRGLWNV FELWVWTVLC CDFFAHHGTD 51 100 ENSP00000236147/1-385 CWTYHYSEKP MNWQRARRFC RDNYTDLVAI QNKAEIEYLE KTLPFSRSYY ENSBTAP00000044113/1-371 CWTYHYSKRP MPWEKARAFC RENYTDLVAI QNKGEIEYLN KTLPFSRTYY bmy_03694T0/1-368 --------RP MTWEKARMFC RKNYTDLVAI QNKGEIEYLN KTLPFSPKYY ENSTTRP00000003829/1-384 CWTYHYSKRP MTWEKARMFC RKNYTDLVAI QNKGEIEYLN KTLPFSPKYY 101 150 ENSP00000236147/1-385 WIGIRKIGGI WTWVGTNKSL TEEAENWGDG EPNNKKNKED CVEIYIKRNK ENSBTAP00000044113/1-371 WIGIRKVEGV WTWVGTNKSL TEEAKNWGAG EPNNRKSKED CVEIYIKRNK bmy_03694T0/1-368 WIGIRKVGGA WTWVGTNKSL TEEAENWGDG EPNNKKSKED CVEIYIKREK ENSTTRP00000003829/1-384 WIGIRKVEGA WTWVGTNKSL TEEAENWGHG EPNNKKSKED CVEIYIKRAK 151 200 ENSP00000236147/1-385 DAGKWNDDAC HKLKAALCYT ASCQPWSCSG HGECVEIINN YTCNCDVGYY ENSBTAP00000044113/1-371 DSGKWNDDAC HKAKTALCYT ASCKPWSCSG HGQCVEVINN YTCNCDLGYY bmy_03694T0/1-368 DAGKWNDDAC HKAKTALCYT ASCQPWSCSG HGQCMEIINN YTCNCDLGYY ENSTTRP00000003829/1-384 DAGKWNDDAC HKAKTALCYT ASCQPLSCSG HGQCMEIINN YTCNCDLGHY 201 250 ENSP00000236147/1-385 GPQCQF-VIQ CEPLEAPELG TMDCTHPLGN FSFSSQCAFS CSEGTNLTGI ENSBTAP00000044113/1-371 GPECQFEVTQ CVPLEAPKLG TMACTHPLGN FSFMSQCAFN CSKGTDMIGV bmy_03694T0/1-368 GPQCH----- ---------- ---------- --FTSQCAFN CFEGTDIVGI ENSTTRP00000003829/1-384 GPQCQF-VTQ CEPLEAPELG TMACIHPLGN FSFTSQCAFN CFEGTDIVGI 251 300 ENSP00000236147/1-385 EETTCGPFGN WSSPEPTCQV IQCEPLSAPD LGIMNCSHPL ASFSFTSACT ENSBTAP00000044113/1-371 EETTCAPFGN WSSPEPTCRV IQCEPLTEPD LGTMDCNHPL VDFGFSSTCT bmy_03694T0/1-368 EETTCGPFGN WSSPKPTCRV IQCEPLTAPD FGTMDCSHPL VDFGFTSMCT ENSTTRP00000003829/1-384 EETTCGPFGN WSSPKPTCRV IQCEPLTAPD FGTMDCSHPL VDFGFTSTCT 301 350 ENSP00000236147/1-385 FICSEGTELI GKKKTICESS GIWSNPSPIC QKLDKSFSMI KEGDYNPLFI ENSBTAP00000044113/1-371 FSCSEEAELT GEKKTICGLS GNWSSPSPRC QKINRTISIN EESDYNPLFI bmy_03694T0/1-368 FSCSEGAELI GEKKTICGSS GNWSSPSPIC QKVDRNFSII KESDYNPLFI ENSTTRP00000003829/1-384 FSCSEGAELI GAKKTICGSS GNWSSPSPIC QKVDRNFSKI KEGDYNPLFI 351 400 ENSP00000236147/1-385 PVAVMVTAFS GLAFIIWLAR RLKKGKKSKR SMND------ ---------- ENSBTAP00000044113/1-371 PVAVMVTAFS GLAFIIWLAR RLKRKSTKLR KSHG------ ---------- bmy_03694T0/1-368 PVAVMVTTFS GLAFIIWLAR RLKKAWMSRI KRPAVKENSW ETEVSLGPSH ENSTTRP00000003829/1-384 PVAVMVTTFS GLAFIIWLAR RLKKGKKSRR SMDE------ ---------- 401 450 ENSP00000236147/1-385 -------PY- ---------- ---------- ---------- ENSBTAP00000044113/1-371 ---------- ---------- ---------- ---------- bmy_03694T0/1-368 PPPRKVLPGG IFYTEDELQQ SNGDLLQLGK VLFALQSQLL ENSTTRP00000003829/1-384 -------PY- ---------- ---------- ----------