KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:55:43 2014 Check: 00 .. Name: ENSP00000263686/1-830 Len: 859 Check: 3052 Weight: 1.00 Name: ENSBTAP00000044117/1-830 Len: 859 Check: 4037 Weight: 1.00 Name: bmy_03695T0/1-791 Len: 859 Check: 2967 Weight: 1.00 Name: ENSTTRP00000003824/1-810 Len: 859 Check: 8660 Weight: 1.00 Name: BACU004257/1-768 Len: 859 Check: 7610 Weight: 1.00 // 1 50 ENSP00000263686/1-830 MANCQIAILY QRF------- ---------- ------QRVV FGISQL---- ENSBTAP00000044117/1-830 QASCPKAIWN WRF------- ---------- ------QRAV FRTVQL---- bmy_03695T0/1-791 MDTKRK---- FSFLITGQLP KSHLELEISE SGLQNHPTLL LQCPDLWGAN ENSTTRP00000003824/1-810 MASCLKAIRN WRF------- ---------- ------QRVV FRITQL---- BACU004257/1-768 MASCLKAIWN WRF------- ---------- ------QRVV FRTTQL---- 51 100 ENSP00000263686/1-830 LCFSALISEL TNQKEVAAWT YHYSTKAYSW NISRKYCQNR YTDLVAIQNK ENSBTAP00000044117/1-830 LCFSVLIFEV INQKEVSAWT YHYSNKTYSW NYSRAFCQKY YTDLVAIQNK bmy_03695T0/1-791 LTHTFLYLEL INQKEVAAWT YHYSNKSYSW NYSRAFCQKY YTDLVAIQNK ENSTTRP00000003824/1-810 FCFSALIAEL INQKEVAAWT YHYSNKSYSW NYSRAFCQKY YTDLVAIQNK BACU004257/1-768 FCFSALISEL INQKEVAAWT YHYSNKSYSW NYSRAFCQKY YTDLVAIQNK 101 150 ENSP00000263686/1-830 NEIDYLNKVL PYYSSYYWIG IRKNNKTWTW VGTKKALTNE AENWADNEPN ENSBTAP00000044117/1-830 NEIAYLNETI PYYNSYYWIG IRKINNKWTW VGTNKTLTEE AENWADNEPN bmy_03695T0/1-791 NEIAYLNEAI PYYSSYYWIG IRKINNQWTW VGTRKTLTEE AENWADNEPN ENSTTRP00000003824/1-810 NEIAYLNEAI PYYSSYYWIG IRKINNQWTW VGTKKTLTEE AENWADNEPN BACU004257/1-768 NEIAYLNEAI PYYSSYYWIG IRKINNQWTW VGTRKTLTEE AENWADNEPN 151 200 ENSP00000263686/1-830 NKRNNEDCVE IYIKSPSAPG KWNDEHCLKK KHALCYTASC QDMSCSKQGE ENSBTAP00000044117/1-830 NKRNNQDCVE IYIKSLSAPG KWNDEPCWKR KRALCYRASC QDMSCSKQGE bmy_03695T0/1-791 NKKNNQDCVE IYIKSLSAPG KWNDEPCGKK KRALCYTASC QDMSCSKQGE ENSTTRP00000003824/1-810 NKKNNQDCVE IYIKSLSAPG KWNDEPCGKK KRALCYTASC QDMSCSKQGE BACU004257/1-768 NKKNNQDCVE IYIKSSSAPG KWNDEPCGKK KRALCYTASC QDMSCSKQGE 201 250 ENSP00000263686/1-830 CLETIGNYTC SCYPGFYGPE CEYVRECGEL ELPQHVLMNC SHPLGNFSFN ENSBTAP00000044117/1-830 CIETIGNYTC SCYPGFYGPE CEYVRECGEF DLPQHVHMNC SHPLGNFSFN bmy_03695T0/1-791 CIETIGNYTC SCYPGFYGPE CEYVTECSEF DLPQHVLMNC SHPLGNFPFN ENSTTRP00000003824/1-810 CIETIGNYTC SCYPGFYGPE CEYVTECSEF DLPQHMLMNC SHPLGNFPFN BACU004257/1-768 CIETIGNYTC SCYPGFYGPE CEYVTACSEF DLPQHVLMNC SHPLGNFPFN 251 300 ENSP00000263686/1-830 SQCSFHCTDG YQVNGPSKLE CLASGIWTNK PPQCLAAQCP PLKIPERGNM ENSBTAP00000044117/1-830 SHCSFHCAEG YALNGPSELE CLASGIWTNS PPQCVAVQCP ALKSPEQGSM bmy_03695T0/1-791 TECSFHCAEG YTLNGPSKLE CLASGIWTNT PPQCVAVQCP PLRSPEQGSM ENSTTRP00000003824/1-810 TQCSFHCAEG YTLNGPSELE CLASGIWTNT PPQCVAVQCP PLKSPEQGSM BACU004257/1-768 TECSFHCAEG YTLNGPSKLE CLASGIWTNT PPQCVAVQCP PLRSPEQGSM 301 350 ENSP00000263686/1-830 TCLHSAKAFQ HQSSCSFSCE EGFALVGPEV VQCTASGVWT APAPVCKAVQ ENSBTAP00000044117/1-830 SCVQSAEAFQ HQSSCSFSCE EGFELVGPEV VHCTALGVWT APTPVCKAMQ bmy_03695T0/1-791 TCFHSAKAFQ HQSSCSFSCE EGFALVGPEV VQCTASGVWT APAPVCK--- ENSTTRP00000003824/1-810 TCLHSAKAFQ HRSSCSFSCE EGFALVGPEV VQCTASGVWT APAPVCQATQ BACU004257/1-768 TCFHSAKAFQ HQSSCSFRCE EGFTLVGPEV VQCTASGVWT APAPVCK--- 351 400 ENSP00000263686/1-830 CQHLEAPSEG TMDCVHPLTA FAYGSSCKFE CQPGYRVRGL DMLRCIDSGH ENSBTAP00000044117/1-830 CEFLEAPTKG ILDCVHPLVS LA-GSSCKFE CKPCHRVRGK ANC-CLGPGW bmy_03695T0/1-791 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003824/1-810 RQLPEAPSKG TLDCVHPLTA FA-GSSYKFE CEPDHRVRGW DTL-CSTGPG BACU004257/1-768 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000263686/1-830 WSAPLPTCEA ISCEPLESPV HGSMDCSPSL RAFQYDTNCS FRCAEGFMLR ENSBTAP00000044117/1-830 GTPPLPAFKA IACEPLESPV HGSMDCSPSL RAFQYNTSCS FHCAEGFTLR bmy_03695T0/1-791 ---------A IACEPLESPV HGSMDCSLSS RAFQYNTNCS FHCAEGFTLR ENSTTRP00000003824/1-810 GTAPLPTFEA IACEPLESPV HGSMDCSLSS RAFQYNSNCS FHCAKGFTLR BACU004257/1-768 ---------A IACEPLESPV HGSMDCSLSS RAFQYNTNCS FRCAEGFTLR 451 500 ENSP00000263686/1-830 GADIVRCDNL GQWTAPAPVC QALQCQDLPV PNEARVNCSH PFGAFRYQSV ENSBTAP00000044117/1-830 GADTVRCADM EEWTAPAPVC QTLQCQDLPT STKARVNCSH PFGDFRYQST bmy_03695T0/1-791 GAGTVRCADL GQWTAPAPVC QALQCQYLPA SNKAQVNCSH PFGAFRYQST ENSTTRP00000003824/1-810 GADTVRCADL GQWTAPAPVC QALQCQYLPA SNKAQVNCSH PFGAFRYQST BACU004257/1-768 GAGTVRCADL GQWTAPAPVC QALQCQYLPA SNKAQVNCSH PFGAFRYQST 501 550 ENSP00000263686/1-830 CSFTCNEGLL LVGASVLQCL ATGNWNSVPP ECQAIPCTPL LSPQNGTMTC ENSBTAP00000044117/1-830 CSFTCDEGSF LVGASVLQCL DTGNWDAPFP ECQAVTCAAL PNPQNGEKTC bmy_03695T0/1-791 CSFTCDEGXL LVGASVLQCL DTGNWNAPFP ECQAVTCAPL PNPKNGTKTC ENSTTRP00000003824/1-810 CSFTCDEGFL LVGASVLQCL DTGNWNAPFP ECQAVTCAPL PNPQNGTKTC BACU004257/1-768 CSFTCDEGLL LVGASVLQCL DTGNWNASFP ECQAVTCAPL PNPQNGTKTC 551 600 ENSP00000263686/1-830 VQPLGSSSYK STCQFICDEG YSLSGPERLD CTRSGRWTDS PPMC-EAIKC ENSBTAP00000044117/1-830 VQPLGGSSYE STCWFTCHEG FSLSGPERLD CTPSGHWTGS PPTCEEAIKC bmy_03695T0/1-791 VQPLGGSSYK AICQFTCDEG FSLSGPERLD CTPSGHWTDS PPTC-DAIKC ENSTTRP00000003824/1-810 VQPLGDSSYK TTCQFTCDEG FSLSGPERLD CTPSGRWTDS PPTC-DAIKC BACU004257/1-768 VQPLGDSSYK ATCQFTCDEG FSLSGPERLD CTPSGHWTDS PPTC-DAIKC 601 650 ENSP00000263686/1-830 PELFAPEQGS LDCSDTRGEF NVGSTCHFSC DNGFKLEGPN NVECTTSGRW ENSBTAP00000044117/1-830 PELSAPEQGS LDCPDTHGEF IVGSICHFSC NKGLKLEGSN HVECTPSGRW bmy_03695T0/1-791 PELSAPEQGS LDCPDTHGEF TAGSTCHFSC NEGFKLEGSN HVECTASGRW ENSTTRP00000003824/1-810 PELSAPERGS LDCPDSHGEF TAGSTCHFSC NEGFKLEGSS HVECTASGRW BACU004257/1-768 PELSAPEQGS LDCPDTHGEF TAGSTCHFSC NEGFKLEGSN HIECTASGRW 651 700 ENSP00000263686/1-830 SATPPTCK-G IASLPTPGVQ CPALTTPGQG TMYCRHHPGT FGFNTTCYFG ENSBTAP00000044117/1-830 IAPPPTCKLD TVSAPAPGVQ CPTLIAPKQG TMSCQHHVRN FGLNTTCHFG bmy_03695T0/1-791 TAPRPTCD-D IVSAPTVEVQ CPSLXTPKQG TMSCQHHLGT FGLNTTCHFG ENSTTRP00000003824/1-810 TAPRPTCD-D IVSAPTVEVQ CPSLVTPKQG TMSCQHRLGN FGLNTTCHFA BACU004257/1-768 TAPQPTCD-D TVSAPTVEVQ CPSLVTPEQG TMSCQHHVGT FGLNTTCHFG 701 750 ENSP00000263686/1-830 CNAGFTLIGD STLSCRPSGQ WTAVTPACRA VKCSELHVNK PIAMNCSNLW ENSBTAP00000044117/1-830 CKAGFTLLGD SALQCRPSRQ WTAAAPTCRA VKCAKLPVTE PIVMNCSNPW bmy_03695T0/1-791 CKAGFTLMGD SALRCRPSGQ WTAVAPACRA VTCSKLHVTE PIVMNCSNPW ENSTTRP00000003824/1-810 CKAGFTLMGD SALRCRPSGQ WTAGAPACRA VKCSKLHVTE PIVMNCSNPW BACU004257/1-768 CKAGFTLMGD SALRCTPSGQ WTAVAPACRA VKCSKLHVTE PIVMNCSNPR 751 800 ENSP00000263686/1-830 GNFSYGSICS FHCLEGQLLN GSAQTACQEN GHWSTTVPTC QAGPLTIQEA ENSBTAP00000044117/1-830 GNFSYGSTCS FHCPEGQLLN GSERTVCQEN GQWSTTMPTC QAGPLTIQET bmy_03695T0/1-791 GNFSYGSTCS FHCPEGRLLS GSARTVCQEN GQWSAVMPAC QAGPLTIQEA ENSTTRP00000003824/1-810 GNFSYGSTCS FHCPEGRLLS GSARTVCQEN GQWSAIVPAC QAGPLTIQEA BACU004257/1-768 GNFSYGSTCS FHCPEGRLLS GSARTVCQEN GQWSAIMPAC QAGPLTIQEA 801 850 ENSP00000263686/1-830 LTYFGGAVAS TIGLIMGGTL LALLRKRFRQ KDDGKCPLNP HSHLGTYGVF ENSBTAP00000044117/1-830 LTYVGGAAAG TTGLVTGSIL LALLRRRCRQ KDDGKSPLNP QSHLGTYGVF bmy_03695T0/1-791 LTYFGGAVAS TTGLVTGGLL LALLRKRCRQ KDEGKSPLNP QSHLGTYGVF ENSTTRP00000003824/1-810 LTYFGGAVAS TTGLVTGGLL LALLRKRCRQ KDEGKSPLNP Q--------- BACU004257/1-768 LTYFGGAVAS TTGLVTGGIL LALLRKRCRQ KDEGKSPLNP QSHLGTYGVF 851 900 ENSP00000263686/1-830 TNAAFDPSP ENSBTAP00000044117/1-830 TNAAFDPSP bmy_03695T0/1-791 TNAAFDPSP ENSTTRP00000003824/1-810 --------- BACU004257/1-768 TNAAFDPSP