KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:55:45 2014 Check: 00 .. Name: bmy_14656T0/1-823 Len: 865 Check: 1898 Weight: 1.00 Name: ENSTTRP00000005220/1-747 Len: 865 Check: 9037 Weight: 1.00 Name: ENSP00000251170/1-696 Len: 865 Check: 7910 Weight: 1.00 Name: ENSBTAP00000044178/1-695 Len: 865 Check: 4139 Weight: 1.00 Name: BACU009145/1-667 Len: 865 Check: 7199 Weight: 1.00 // 1 50 bmy_14656T0/1-823 ---------- -----MEPGL WGPLSAWGGT IVETAVPSLT QSGKAGSKSP ENSTTRP00000005220/1-747 GSWSAPPSRR PLPDPPGRRV CWSGRPALGI RGCAPPQALC PFLPGGFRWW ENSP00000251170/1-696 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000044178/1-695 ---------- ---------- ---------- ---------- ---------- BACU009145/1-667 ---------- ---------- ---------- --MPSPRLCA HSCLAGFRWW 51 100 bmy_14656T0/1-823 SAADQLCRYL GVPDGVLPTR GSGHCSFHRP GRSSLLWIPP LGIETTAQGG ENSTTRP00000005220/1-747 SCENMVQKY- ---------- ---------- ---------- ---------- ENSP00000251170/1-696 ----MVQRY- ---------- ---------- ---------- ---------- ENSBTAP00000044178/1-695 ----MVQKY- ---------- ---------- ---------- ---------- BACU009145/1-667 SCENMVQKY- ---------- ---------- ---------- ---------- 101 150 bmy_14656T0/1-823 LQGEGLCSGC PQSPWRSPPP LCPQAYEKRF PTCPQIPVFL GSEVLRESRS ENSTTRP00000005220/1-747 --------QS PVCVYKYPFE LVMAAYEKRF PTCPQIPVFL GSEVLRESRS ENSP00000251170/1-696 --------QS PVRVYKYPFE LVMAAYEKRF PTCPQIPVFL GSEVLRESRS ENSBTAP00000044178/1-695 --------QS PIRVYKHPFE LVMVAYEKRF PTCPQIPVFL GSEVLRESRS BACU009145/1-667 --------QS PVCVYKYPFE LVMA------ ---------- ---------- 151 200 bmy_14656T0/1-823 ADGAVHLVER SCRLRVEAPR LLRKIAGVEH VVFVQRNVLN WKERTLLIEA ENSTTRP00000005220/1-747 ADGAVHLVER SCRLRVEAPR LLRKIAGVEH VVFVQRNVLN WKERTLLIEA ENSP00000251170/1-696 PDGAVHVVER SCRLRVDAPR LLRKIAGVEH VVFVQTNILN WKERTLLIEA ENSBTAP00000044178/1-695 ADGAVHVVER SCRLRVEAPR LLCKIAGVEH VVFVQRNVLN WKERTLFIEA BACU009145/1-667 ---------- ---------- ----IAGVEH VVFVQRNVLN WKERTLLIEA 201 250 bmy_14656T0/1-823 HNETFASRVV VKENCSYTVH PENEDWTCFE QSASLDIRSF FGFESALEKI ENSTTRP00000005220/1-747 HNETFASRVV VKENCSYTVH PENEDWTCFE QSASLDIRSF FGFESALEKI ENSP00000251170/1-696 HNETFANRVV VNEHCSYTVH PENEDWTCFE QSASLDIRSF FGFENALEKI ENSBTAP00000044178/1-695 HNETFASRVV VKENCSYRVH PENEDWTCFE QSASLDIRSF FGFESALEKI BACU009145/1-667 HNETFASRVV VKENCSYTVH PENEDWTCFE QSASLDIRSF FGFESALEKI 251 300 bmy_14656T0/1-823 AMKQYTANVK RGKEVIEHYL NELISQGTSH IPRWTPAPVP EEDTHSQAGL ENSTTRP00000005220/1-747 AMKQYTANVK RGKEVIEHYL NELISQGTSH IPRWTPAPVP EEDTHSQAGL ENSP00000251170/1-696 AMKQYTANVK RGKEVIEHYL NELISQGTSH IPRWTPAPVR EEDARNQAGP ENSBTAP00000044178/1-695 AMRQYTANVK RGKEVIEHYL NELISQGTSH IPRWTPALAR EEDAPSQAGQ BACU009145/1-667 AMKQYTANVK RGKEVIEHYL NELISQGTSH IPRWTPVPGP EEDTHSQAGL 301 350 bmy_14656T0/1-823 RDPGSLEVCG PGSAQGPAPE MVSTDGDKLD ADYIERCLGH LTPMQESCLI ENSTTRP00000005220/1-747 RDPGSLEVCG PGSAQGPAPE MVSTDGDKLD ADYIERCLGH LTPMQESCLI ENSP00000251170/1-696 RDPSSLEAHG PRSTLGPALE AVSMDGDKLD ADYIERCLGH LTPMQESCLI ENSBTAP00000044178/1-695 REPDSLEVCG PSSAQDLAPE SVSTDGDKLD ADYIERCLGH LTPRQESCLV BACU009145/1-667 RDPGSLEVCG PGSAQGPAPE MVSTDGNKLD ADYIERCLGH LTPMQESCLI 351 400 bmy_14656T0/1-823 QLRHWLQETH KGKVPKDEHI LRFLRARDFH LDRAREMLCQ SLSWRKQHQV ENSTTRP00000005220/1-747 QLRHWLQETH KGKIPKDEHI LRFLRARDFH LDRAREMLCQ SLSWRKQHQV ENSP00000251170/1-696 QLRHWLQETH KGKIPKDEHI LRFLRAHDFH LDKAREMLRQ SLSWRKQHQV ENSBTAP00000044178/1-695 QLRRWLQETH KGKIPKDEHI LRFLRARDFH LDRAREMLCQ SLSWRKQHQV BACU009145/1-667 QLRHWLQETH KGKIPKDEHI LRFLRARDFH LDRAREMLCQ SLSWRKRHQV 401 450 bmy_14656T0/1-823 DLLLRTWRPP ALLEEFYAGG WHYQDIDGRP LYILRLGHMD TKGLMKATGE ENSTTRP00000005220/1-747 DLLLQTWRPP ALLEEFYAGG WHYQDIDGRP LYILRLGHMD TKGLMKAVGE ENSP00000251170/1-696 DLLLQTWQPP ALLEEFYAGG WHYQDIDGRP LYILRLGQMD TKGLMKAVGE ENSBTAP00000044178/1-695 DLLLETWRPP ALLEEFYAGG WHYQDIDGRP LYILRLGHMD TKGLMKAVGE BACU009145/1-667 DLLLQTWRPP ALLEEFYAGG WHYQDIDGRP LYILRLGHMD TKGLMKAAGE 451 500 bmy_14656T0/1-823 EVLLQHVAER GGVRGRLCR- ---------S SWTCLVDLEG LSLRHLWRPG ENSTTRP00000005220/1-747 EVLLQHVLCV NEEGQKRCEG NTKQFGRPIS SWTCLVDLEG LSLRHLWRPG ENSP00000251170/1-696 EALLRHVLSV NEEGQKRCEG STRQLGRPIS SWTCLLDLEG LNMRHLWRPG ENSBTAP00000044178/1-695 EVLLRHILSV NEEGQKRCEG NTKQFGRPIS SWTCLVDLEG LSLRHLWRPG BACU009145/1-667 EVLLQHVLCV NEEGQKRCEG NTKQFGRPIS SWTCLVDLEG LSLRHLWRPG 501 550 bmy_14656T0/1-823 IKALLRMIEV VEDNYPETLG RLLIVRAPRV FPVLWTLRQQ LSGPRRPCRL ENSTTRP00000005220/1-747 IKALLRMIEV VEDNYPETLG RLLIVRAPRI FPVLWTLISP FINENTRQKF ENSP00000251170/1-696 VKALLRMIEV VEDNYPETLG RLLIVRAPRV FPVLWTLISP FINENTRRKF ENSBTAP00000044178/1-695 VKALLRMIEV VEGNYPETLG RLLIVRAPRV FPVLWTLISP FINENTRQKF BACU009145/1-667 IKALLRMIEV VEDNYPETLG RLLIVRAPRV FPVLWTLISP FINENSRQKF 551 600 bmy_14656T0/1-823 PGQRSDPRLP RGRVPSKAPA GPALTARGGS VAWEKQGC-- ----GWKKCN ENSTTRP00000005220/1-747 L--------- -------IYS GSNYQGPGGL VDYLDKEVIP DFLGGECLCN ENSP00000251170/1-696 L--------- -------IYS GSNYQGPGGL VDYLDREVIP DFLGGESVCN ENSBTAP00000044178/1-695 L--------- -------IYS GSNYQGPGGL VDYLDKDVIP DFLGGECLCN BACU009145/1-667 L--------- -------IYS GSNYQGPGGL VDYLDKEVIP DFLGGECLCN 601 650 bmy_14656T0/1-823 VPEGGLVPKS LYLTEEDQEH RDQLRQWRET YQAASV---- ----AVEILE ENSTTRP00000005220/1-747 VPEGGLVPKS LYLTEEDQEH KDQLQQ--RE YQSASVLRGA PHEXXXXXXX ENSP00000251170/1-696 VPEGGLVPKS LYMTEEEQEH TDQLWQWSET YHSASVLRGA PHEVAVEILE ENSBTAP00000044178/1-695 VPEGGLVPKS LYLTEEDQEN EDQLWQWRET YHSASVLRGA PHEVTVEILE BACU009145/1-667 VPEGGLVPKS LYLTEEDQEH RDQLRQWRET YQAASVLRAA PHEVAVEILE 651 700 bmy_14656T0/1-823 RESVITWDFD ILQGDVMFSL YHTKQAPKLG PREPRARAGG QLTDKGWALA ENSTTRP00000005220/1-747 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000251170/1-696 GESVITWDFD ILRGDVVFSL YHTKQAPRLG AREPGTRASG QLIDKGWVLG ENSBTAP00000044178/1-695 RVSVITWDFD ILRGDVVFSL YHAKQASMPG PREPGARASG QLMDRGWALG BACU009145/1-667 RESVITWDFD ILQGDVMFSL YYTKQAPKPG PREPGARAGG QLTDKGWALG 701 750 bmy_14656T0/1-823 APPRPQPPPP IPIKRKALSC QGYGVTAEGK QRWLWDTPKG RICWWTGLER ENSTTRP00000005220/1-747 XXXXXXXXX- -------XXX X------XXX X--------- ---------- ENSP00000251170/1-696 RDYSRVEAP- -------LVC R------EGE S--------- ---------- ENSBTAP00000044178/1-695 ANFSCVEAP- -------LIC R------EGE S--------- ---------- BACU009145/1-667 ADYSRVEAP- -------LIC R------EGE S--------- ---------- 751 800 bmy_14656T0/1-823 GSCHLVDQGL RHVAAVFQGS HVTQWPGVYL LQWQMHSAPG HMACSLPGVE ENSTTRP00000005220/1-747 ---------- ------XXGS HVTQWPGVYL LQWQMHSAPG HMACSLPGVE ENSP00000251170/1-696 ---------- ------IQGS HVTRWPGVYL LQWQMHSPPS SVACSLPGVD ENSBTAP00000044178/1-695 ---------- ------IQGS HVTQWPGIYL LQWQMHSPPA HMACSLPGVE BACU009145/1-667 ---------- ------IQGS HVTQWPGVYL LQWQMHSAPG HMACSLPGVE 801 850 bmy_14656T0/1-823 DVLMALHSPG PRCKLLYYYE VLASEDFRGS MSSLESCSSR FSQLSSTTSS ENSTTRP00000005220/1-747 DVLMALHSPG PRCKLLYYYE VLASEDFRGS MSSLESCTSR FSQLNATTSS ENSP00000251170/1-696 DVLTALHSPG PKCKLLYYCE VLASEDFRGS MSSLESCTSG FSQLSAATSS ENSBTAP00000044178/1-695 DVLTALHSPG PRCKLLYYYE VLASEDFRGS MSSLESCTSR FSQLSAATSS BACU009145/1-667 DVLMALHSPG PRCKLLYYYE VLASEDFRGS MSSLESCSSR FSQLSSTTSS 851 900 bmy_14656T0/1-823 SS--QSHSSS LVSR- ENSTTRP00000005220/1-747 SG--QSHSIS LVSPY ENSP00000251170/1-696 SSSGQSHSSS LVSR- ENSBTAP00000044178/1-695 SSA-PSHSSS LVSR- BACU009145/1-667 SSS-QSHSSS LVSR-