KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:55:52 2014 Check: 00 .. Name: ENSP00000323280/1-668 Len: 673 Check: 5348 Weight: 1.00 Name: ENSBTAP00000044264/1-672 Len: 673 Check: 2815 Weight: 1.00 Name: ENSTTRP00000011862/1-660 Len: 673 Check: 9810 Weight: 1.00 Name: bmy_16546T0/1-498 Len: 673 Check: 2306 Weight: 1.00 Name: BACU005409/1-601 Len: 673 Check: 3180 Weight: 1.00 // 1 50 ENSP00000323280/1-668 MWLFFGITGL LTAALSGHPS PAPPDQLNTS SAESELWEPG ERLPVRLTNG ENSBTAP00000044264/1-672 MALFFVVAGL LTAALSGHPS PTPSDQPSTT SAESQTLEPG ERLQVRLVNG ENSTTRP00000011862/1-660 IMLLFVVAGL LTAALSGHPS PAPSRQPNTT SEESQLLQPG ERLQVRLMNG bmy_16546T0/1-498 ---------- ---------- ---------- ---------- -------MNG BACU005409/1-601 ---------- ---------- ---------- ---------- -------MNG 51 100 ENSP00000323280/1-668 SSSCSGTVEV RLEASWEPAC GALWDSRAAE AVCRALGCGG AEAASQLAPP ENSBTAP00000044264/1-672 STRCEGTVEV WFQQSWQPVC GALWELDASH ALCSSLDCGR AHPLELPVLQ ENSTTRP00000011862/1-660 SSRCNGTAEV WFRQSWEPAC GALWDLRASE AVCRSLGCGR A--AAQPVPP bmy_16546T0/1-498 SSRCNGTVEV WFRQSWEPAC GALWDLRASE AVCRSLGCGR AEPREQPVLP BACU005409/1-601 SSRCNGTVEV WFRQSWEPAC GALWDLRASE AVCRSLGCGR AEPREQPVLA 101 150 ENSP00000323280/1-668 TPELPPPPAA GNTSVAANAT LAGAPALLCS GAEWRLCEVV EHACRSDGRR ENSBTAP00000044264/1-672 TPEPPAWAAA GNASWAPNTT SVLAPAVQCS GPEWLSCKVV ERDCRSDEWP ENSTTRP00000011862/1-660 TPALPTGAAA GNASWAPNTT WALAPTVQCS GPEWQLCKVV EHACSSDERP bmy_16546T0/1-498 TPALPPGAAA GNASWAPNTT WALAPTVQCS GPEWQLCKVV EHACSSDERL BACU005409/1-601 TPALPPGAAA GNASWAPNTT WALAPTVQCS GPEWQLCKVV EHACSSDERP 151 200 ENSP00000323280/1-668 ARVTCAENRA LRLVDGGGAC AGRVEMLEHG EWGSVCDDTW DLEDAHVVCR ENSBTAP00000044264/1-672 AQVNCTDKRD LKLVGGGSPC EGRVEMLEHG QWGSVCDDTW DLEDAHVVCR ENSTTRP00000011862/1-660 VQVTCAXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXDDAH-VCR bmy_16546T0/1-498 VQVTCAENLD LKLVGGGSPC EGRVEMLEHG QWGSVCDDTW DLDDAHVVCR BACU005409/1-601 VQVTCAENLD LKLVGGGSPC EGRVEMLEHG QWGSVCDDTW DLDDAHVVCR 201 250 ENSP00000323280/1-668 QLGCGWAVQA LPGLHFTPGR GPIHRDQVNC SGAEAYLWDC PGLPGQHYCG ENSBTAP00000044264/1-672 QLGCGWAVQA LPGLHFAPGQ GRIHWDQVNC TGLETYLWHC PGLPGNGYCG ENSTTRP00000011862/1-660 -LSCGWAV-V LPGLHFAPGQ GRIHRDQVNC SGSETYLWDC LGLPGNGYCG bmy_16546T0/1-498 QLSCGWAVQA LPGLHFAPGH GRIHRDQ--- ---------- ---------- BACU005409/1-601 QLSCGWAVQA LPGLHFAPGR GRIHRDQVNC SGSETYLWDC LGLPGNGYCG 251 300 ENSP00000323280/1-668 HKEDAGAVCS EHQSWRLTGG ADRCEGQVEV HFRGVWNTVC DSEWYPSEAK ENSBTAP00000044264/1-672 HKEDAGVVCS EHQSWRLTGG TDPCEGQVEV YFRGVWNTVC DSEWYDSEAN ENSTTRP00000011862/1-660 HKEDAGVVCS EHQSWRLTGG ADPCEGQVEV YFRGVWNTVC DSTWYEPEAN bmy_16546T0/1-498 ---------- -HQSWRLTGG ADPCEGQVEV YFRGVWNTVC DSTWYEPEAK BACU005409/1-601 HKEDAGVVCS EHQSWRLTGG ADPCEGQVEV YFRGVWSTVC DSTWYEPEAK 301 350 ENSP00000323280/1-668 VLCQSLGCGT AVERPKGLPH SLSGRMYYSC NGEELTLSNC SWRFNNSNLC ENSBTAP00000044264/1-672 VLCQDLGCGT VARVPKGLPH SLSGKMFYSC KGKESTLSKC FWRFNNSNLC ENSTTRP00000011862/1-660 VLCRDLGCGT LARVPKGLPH SLSGKMYYSC EGGEPTLSEC FWRFNNSNLC bmy_16546T0/1-498 VLCRDLGCGT LARVPKGLPH SLSGKMYYSC EGGEPTLSEC FWRFNNSNLC BACU005409/1-601 VLCRDLGCGT LARVPKGLPH SLSGKMYYSC EGGEPTLSEC FWRFNNSNLC 351 400 ENSP00000323280/1-668 SQSLAARVLC SASRSLHNLS TPEVPASVQT VTIESSVTVK IENKESRELM ENSBTAP00000044264/1-672 RQSQAARVLC SGARSLLNLS ITEVPASGQP VTVDSSVIVK TKDWESRELM ENSTTRP00000011862/1-660 RQSQAARVLC SGARSLLNLS TSEIPATGQP VTVESSVTVK MKDWESRELM bmy_16546T0/1-498 SQSQAARVLC S--------- ---------- ---ESSVMVK MKDWESRELM BACU005409/1-601 SQSQAARVLC S--------- ---------- ---ESSVTVK MKDWESRELM 401 450 ENSP00000323280/1-668 LLIPSIVLGI LLLGSLIFIA FILLRIKGKY ALPVMVNHQH LPTTIPAGSN ENSBTAP00000044264/1-672 LLIPCIVLGI LLLISLVFIA IILLRMKGKY ALPAVVNHQH SPTTTPAGME ENSTTRP00000011862/1-660 LLIPCIVLGI LLLVSLSFIA IILLRIKGKY ALPAMVNHQH LPTTTPAGTT bmy_16546T0/1-498 LLIPCIVLGI LLLVSLSFIA IILLRIKGKY ALPAMVNHQH LPTTTPAGTT BACU005409/1-601 LLIPCIVLGI LLLVSLSFIA IILLRIKGKY ALPAMVNHQH LPTTTPAGTT 451 500 ENSP00000323280/1-668 SYQPVPITIP K-EVFMLPIQ VQAPPPEDSD SGSDSDYEHY DFSAQPPVAL ENSBTAP00000044264/1-672 NYQEVPITIA K-EVPKLPIQ VQAPPPEDSN SSSDSDYEHY DFRTQPPVAL ENSTTRP00000011862/1-660 SYQEVPITIA K-EVPKLPIQ VQAPPPEDSN SSSDSDYEHY DFSSQPPVAL bmy_16546T0/1-498 SYQEVPITIA KEEIPKLPIQ VQAPPPEDSN SSSDSDYEHY DFSSQPPVAL BACU005409/1-601 SYQEVPITIA KEEIPKLPIQ VQAPPPEDTN SSSDSDYEHY DFSSQPPVAL 501 550 ENSP00000323280/1-668 TTFYNSQRHR VTDEEVQQSR FQMPPLEE-- GLEELHASHI PTANPGHCIT ENSBTAP00000044264/1-672 TTFYNSQRHR FTEEEAQQNR FQMPPLEEGP GLEEVHASEV PPANLEHCIA ENSTTRP00000011862/1-660 TTFYNSQRHR FTDEEVRQNR FQMPPLEE-- GLEEVHASRV PPANPEHCIA bmy_16546T0/1-498 TTFYNSQRHR FTDEEVQQNR FQMPPLEE-- ---------- ---------- BACU005409/1-601 TTFYNSQRHR FTDEEVQQNR FQMPPLEEGP GLEEVHASQV PPANREHCIA 551 600 ENSP00000323280/1-668 DPPSLG--PQ YHPRSNSESS TSSGEDYCNS PKSKLPPWNP QVFSSERSSF ENSBTAP00000044264/1-672 NPPSLDPPPP HPPRSKSSSS TSSGEMYCNS PSSKRPLWSS QVFSSERNPL ENSTTRP00000011862/1-660 DPRSTG--PQ RHPRSKGGSS TSSGEGCCNS PGSRLPPWNS QVFSSERKPL bmy_16546T0/1-498 DPHSTG--PQ HHPRSKSGSS TSSGEEYCNS PSSRLPPWNS QVFSSERNPP BACU005409/1-601 DPRSTG--PP HHPRSKSGCS TSSGEEYCNS PSSRLPPCNS QVFSSERNPL 601 650 ENSP00000323280/1-668 LEQPPNLELA GTQPAFSAGP PADDSSSTSS GEWYQNFQPP PQPPSEEQFG ENSBTAP00000044264/1-672 LEQPPNLELA GSQATIPAGP SADDSSSTSS GEWYQNYQRP PQPLSAEQFG ENSTTRP00000011862/1-660 LGQPLNLELA GSQATFPAGP SADDSSSTSS GEWYQNFQPP PQLPSAEQFG bmy_16546T0/1-498 LGQPLNLELA GSQAAFP--- ---------- ---------- ---------- BACU005409/1-601 LGQPLNLELA GSQAAFP-GP SADDSSSTSS GEWYQNFQPP PQLPSAEQFG 651 700 ENSP00000323280/1-668 CPGSPSPQPD STDNDDYDDI SAA ENSBTAP00000044264/1-672 CPGSHAPQPD SSSDEEYDDI GAA ENSTTRP00000011862/1-660 CPGSSQLD-- -SFNEDYNDI GAA bmy_16546T0/1-498 ---------- -----DYDDI GAA BACU005409/1-601 CPGSLTPQPD FSSNEDYDDI GAA