KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:55:54 2014 Check: 00 .. Name: ENSP00000301039/1-336 Len: 381 Check: 7769 Weight: 1.00 Name: ENSTTRP00000003862/1-333 Len: 381 Check: 6863 Weight: 1.00 Name: ENSBTAP00000044327/1-376 Len: 381 Check: 6174 Weight: 1.00 Name: bmy_00117T0/1-344 Len: 381 Check: 3212 Weight: 1.00 Name: BACU010503/1-375 Len: 381 Check: 645 Weight: 1.00 // 1 50 ENSP00000301039/1-336 MWVRTTLTIE RWTKEKTEPK ARSWDESRC- ---------- ---------- ENSTTRP00000003862/1-333 MSVRTTLRTE RWTKEKTEDD AT-WDDSST- ---------- ---------- ENSBTAP00000044327/1-376 MWVRTTLRIE RWTKEKTEDD TSSWDESSTD INRLPSWGRG HLLASVESST bmy_00117T0/1-344 MWVRTTLRIE RWTKEKTEDD ASWWDESST- ---------- ---------- BACU010503/1-375 MWVRTTLRIE RWTKEKTEDD ASWWDESSTD INRLPSWERG HLLAGVASST 51 100 ENSP00000301039/1-336 -------RGD CKEPDKCCWR HKQCTGHIIY PFASDCVRHS LHLHSVNHCN ENSTTRP00000003862/1-333 --------XX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000044327/1-376 DASTLSSEGE FKNTDRCCWK HK-CAGHIVR PFSPDCVHHD VHLHSLSHCD bmy_00117T0/1-344 --------GE FKDTDRCCWK HRKCTGHIIH PFTSDYGHHD VHLHSISHCD BACU010503/1-375 DASTF-SEGE FKDTDRCCWK HRKCTGHIIH PFTSDYGHHD VHLHSISHCD 101 150 ENSP00000301039/1-336 CNSRLKDSSE DSSSSRG-AG PTCSH----- ---VIESPCF ELTPEEEHVE ENSTTRP00000003862/1-333 XXXXLKDCSE KTYSSSGDVD LTCSQ----- ---VIQCPCF ELIPEGECVE ENSBTAP00000044327/1-376 CDSRLKDCSE KTNSSSGDVG PTCSRDVDST CFDIIQSPCF ELIPEEECVE bmy_00117T0/1-344 CDSRLKDCSE KTYSSSGDVG PTCSQDVDSA CFNIIQCPCF ELIPKEECVE BACU010503/1-375 CDSRLKDCSE KTYSSSGDVG PTCSQDVDSA CFNIIQCPCF ELIPEEECVE 151 200 ENSP00000301039/1-336 RFRYGWCKSY RPVSVAVIHH PLYHECGADD LNE----EEE EEEEESKPPI ENSTTRP00000003862/1-333 RFWCGWCKSY RPVSVAVIHH PIHRECGADD LNQ----EEE EKEEESKPPI ENSBTAP00000044327/1-376 RFWYGWCKSY RPVSVAVIHH PIHHECGADD LNQ---EEEE EEEEESKPPI bmy_00117T0/1-344 R-----CKSY RPVSVAVIHH PIHHECGADD LNQEEEEEEE EEEEESKPPI BACU010503/1-375 RFWCGWCKSY RPVSVAVIHH PIHHECRADD LNQ--EEEEE EEEEESKPPI 201 250 ENSP00000301039/1-336 PTQVGPATA- -SPDLGTSMA TGTPDSTAPI TIWRSESPTG KGQGSKVIKK ENSTTRP00000003862/1-333 PTQVGPPAL- -LTNTGMGMV TGTPDLATPI TIWRSESPTG KSQGNKMIKK ENSBTAP00000044327/1-376 PTQVGPTPTD SPTDTGMSMI TGAPDSAAPI TIWRSESPTG KSQGNRVIKK bmy_00117T0/1-344 PTQVGPPAL- -PTNTGMGMV TGTPDLAAPI TIWRSESPTG KSQGSKVIKK BACU010503/1-375 PTQVGPPAL- -PTNTGMGMV TGTPDLAAPI TIWRSESPTG KSQGSKVIKK 251 300 ENSP00000301039/1-336 VKKKKEKEKD KE-EMDEKAK LKKKAKKGQL TKKKSPVKLE PSPPDVSRSL ENSTTRP00000003862/1-333 IKKKKGKEKD KEEETDEKAK VKKKVKKGKL TKKKSPVKSE -SPSDLSQSL ENSBTAP00000044327/1-376 IKKKKEKDKE EETDEKEKAK VKKKVKKGKL MKKKSPVKSE -SPPDLSRSL bmy_00117T0/1-344 IKKKKEKEKD KEEETDEKAK VKKKVKKGKL TKKKSPVKSE -SPPDLNRSL BACU010503/1-375 IKKKKEKEKE KEEETDEKAK VKKKVKKGKL TKKKSPVKSE -SPPDLNRSF 301 350 ENSP00000301039/1-336 SARQLARMSE SSPESREELE SEDSYNGRGQ GELSSEDIVE SSSPRKRE-N ENSTTRP00000003862/1-333 SPRELARMSE SSPDSWRDL- --DSYNDPGR EEPSSKDIVE SLSPRKREKN ENSBTAP00000044327/1-376 SPRELARMSE SSPDSRQDLE SEDSYNDPGR EEPSSEDIVE SSSPRKREKN bmy_00117T0/1-344 SPRELARMSE SSPDSWQDLE SEDSYNDPGR EEPSNGDIVE SSSARKREKN BACU010503/1-375 SPRELARMSE SSPDSWQDLE SEDSYNDPGR EEPSNGDIVE SSSPRKREKN 351 400 ENSP00000301039/1-336 TVQAKKTGAK PSQARKVNKR KSPPGSNPNL S ENSTTRP00000003862/1-333 GVQAMKPRMK TSPVKKVNMR KYPPASNPNL S ENSBTAP00000044327/1-376 GVQVKKPGLK TSPVKKINKR RSPPASNPNL S bmy_00117T0/1-344 RVQAKKPGMK TSPVKKVNKR KSPPASNPNL S BACU010503/1-375 GVQAKKPGMK TSPVKKVNKR KSPPASNPNL S