KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:55:55 2014 Check: 00 .. Name: bmy_02090T0/1-770 Len: 798 Check: 2512 Weight: 1.00 Name: ENSP00000196371/1-520 Len: 798 Check: 7571 Weight: 1.00 Name: ENSBTAP00000044368/1-520 Len: 798 Check: 2193 Weight: 1.00 Name: BACU016703/1-410 Len: 798 Check: 9110 Weight: 1.00 Name: ENSTTRP00000004074/1-520 Len: 798 Check: 1306 Weight: 1.00 // 1 50 bmy_02090T0/1-770 MDTALVAPPC ARCRARRLTT QLPEPSRHPG DRAGTSLFSR RERSHPDCPG ENSP00000196371/1-520 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000044368/1-520 ---------- ---------- ---------- ---------- ---------- BACU016703/1-410 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004074/1-520 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_02090T0/1-770 PKIPPGPAHP GTRAGTTMEW DRTLGHQELQ WKEFRFDLTQ IPAGEAVTAA ENSP00000196371/1-520 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000044368/1-520 ---------- ---------- ---------- ---------- ---------- BACU016703/1-410 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004074/1-520 ---------- ---------- ---------- ---------- ---------- 101 150 bmy_02090T0/1-770 EFRIYKLPST HLLNWTLHVS MFEVVLEQSN RESDLFFLDL QTLRSGDEGW ENSP00000196371/1-520 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000044368/1-520 ---------- ---------- ---------- ---------- ---------- BACU016703/1-410 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004074/1-520 ---------- ---------- ---------- ---------- ---------- 151 200 bmy_02090T0/1-770 LVLDVTAASD RWLLNRNKDL GLRLYVETDD ALRLLESAFG RRVPAGRSVP ENSP00000196371/1-520 ---------- ---------- --------MA ALKLLSSGLR LCASARGSGA ENSBTAP00000044368/1-520 ---------- ---------- --------MA ALARLSSRLR FCASALSSAG BACU016703/1-410 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004074/1-520 ---------- ---------- --------MA ALTRLSSRLR FCPSARRPGG 201 250 bmy_02090T0/1-770 ALATGGVCGF ASSARARAKS YADPVEAVRD IPDAARIMVR GFGLCAIPEN ENSP00000196371/1-520 TWYKGCVCSF STSAHRHTKF YTDPVEAVKD IPDGATVLVG GFGLCGIPEN ENSBTAP00000044368/1-520 VWSKGCICYF STSTRHHTKF YTDPVEAVKD IPDGATILVG GFGLCGIPEN BACU016703/1-410 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004074/1-520 AWSKECVCYF STSTRRHTKF YMDPVEAVKD IPDGATVLVG GFGLCGIPEN 251 300 bmy_02090T0/1-770 LIGALLKTRV KDLTVVSSNV GEENFGLGLF LGTKQITRIV CSYLGENSLC ENSP00000196371/1-520 LIDALLKTGV KGLTAVSNNA GVDNFGLGLL LRSKQIKRMV SSYVGENAEF ENSBTAP00000044368/1-520 LIGALLKTGV KGLTAVSNNA GVDNFGLGLL LRSKQIKRMV SSYVGENAEF BACU016703/1-410 ---------- ---------- ---------- --------MI SSYVGENAEF ENSTTRP00000004074/1-520 LIGALLKTGV KGLTAVSNNA GVDNFGLGLL LRSKQIKRMV SSYVGENAEF 301 350 bmy_02090T0/1-770 EHQYLAGELE LEITPQGTLA ERIRAGGAGV PAFHTPTAYG TLAQEGGAPS ENSP00000196371/1-520 ERQYLSGELE VELTPQGTLA ERIRAGGAGV PAFYTPTGYG TLVQEGGSPI ENSBTAP00000044368/1-520 ERQYLSGELE VELTPQGTLA ERIRAGGAGV PAFYTSTGYG TLVQEGGSPI BACU016703/1-410 ERQYLSGELE VELTPQGTLA ERIRAGGAGV PAFYTSTGYG TLVQEGGSPI ENSTTRP00000004074/1-520 ERQYLSGELE VELTPQGTLA ERIRAGGAGV PAFYTSTGYG TLVQEGGSPI 351 400 bmy_02090T0/1-770 KYLEDGHIAI LSQPREVREF HGQHHLLKHA VTAEFALVKG WKABRAGNAI ENSP00000196371/1-520 KYNKDGSVAI ASKPREVREF NGQHFILEEA ITGDFALVKA WKADRAGNVI ENSBTAP00000044368/1-520 KYNKDGSIAI ASKPREVREF KGQHFILEEA ITGDFALVKA WKADRAGNVI BACU016703/1-410 KYSKDGSIAI ASKPREVREF NGQHFILEEA ITGDFALVKA WKADRAGNVI ENSTTRP00000004074/1-520 KYNKDGSIAI ASKPREVREF NGQHFILEEA ITGDFALVKA WKADRAGNVI 401 450 bmy_02090T0/1-770 FRASARNFNV PMCKAARSSV VEXEEIVDLG SFAPEDIHVP NTYLDRGIQG ENSP00000196371/1-520 FRKSARNFNL PMCKAAETTV VEVEEIVDIG AFAPEDIHIP QIYVHRLIKG ENSBTAP00000044368/1-520 FRKSARNFNL PMCKAAETTV VEVEEIVDIG SFAPEDIHIP KIYVHRLIKG BACU016703/1-410 FRKSARNFNL PMCKAAETTV VEVEEIVDIG SFAPEDIHIP KIYVHRLIKG ENSTTRP00000004074/1-520 FRKSARNFNL PMCKAAETTV VEVEEIVDIG SFAPEDIHIP KIYVHRLIKG 451 500 bmy_02090T0/1-770 EKYEKNMS-- ---------- ---------- --IIKGAALE FEDGLYANLG ENSP00000196371/1-520 EKYEKRIERL SIRKEGDGEA KSAKPGDDVR ERIIKRAALE FEDGMYANLG ENSBTAP00000044368/1-520 EKYEKRIERL SIRKEEDIKT TSGKPGDNVR ERIIKRAALE FEDGMYANLG BACU016703/1-410 EKYEKRIERL SIRKEEDVKT TSGKPGDNVR ERIIKRAALE FEDGMYANLG ENSTTRP00000004074/1-520 EKYEKRIERL SIRKEEDVKT TSGKPGDNVR ERIIKRAALE FEDGMYANLG 501 550 bmy_02090T0/1-770 IGIPLLATNY ISPSITVHLH SENGILGLGL FPLKEEVDAD LNNVGKQTVT ENSP00000196371/1-520 IGIPLLASNF ISPNITVHLQ SENGVLGLGP YPRQHEADAD LINAGKETVT ENSBTAP00000044368/1-520 IGIPLLASNY ISPDMTVHLQ SENGVLGLGP YPLKNEVDAD LINAGKETVT BACU016703/1-410 IGIPLLASNF ISPSMTVHLQ SENGVLGLGP YPLENEVDAD LINAGKETVT ENSTTRP00000004074/1-520 IGIPLLASNF ISPSMTVHLQ SENGVLGLGP YPLKNEVDAD LINAGKETVT 551 600 bmy_02090T0/1-770 LLPGGCFFSS DESFAMIRGR HIDLTLLGAM QVSKYGDLAN WMIPGKKVKG ENSP00000196371/1-520 ILPGASFFSS DESFAMIRGG HVDLTMLGAM QVSKYGDLAN WMIPGKMVKG ENSBTAP00000044368/1-520 VLPGASYFSS DESFAMIRGG HVNLTMLGAM QVSKYGDLAN WMIPGKMVKG BACU016703/1-410 VLPGASYFSS DESFAMIRGG HVNLTMLGAM QVSKYGDLAN WMIPGKMVKG ENSTTRP00000004074/1-520 VLPGASYFSS DESFAMIRGG HVNLTMLGAM QVSKYGDLAN WMIPGKMVKG 601 650 bmy_02090T0/1-770 MGGAMDLGSS TKSRVVVTME HCTKAKEPKI LEICTMPLNG KRAQRGSWPG ENSP00000196371/1-520 MGGAMDLVSS AKTKVVVTME HSAKGNAHKI MEKCTLPLTG KQCVNRIITE ENSBTAP00000044368/1-520 MGGAMDLVSS ARTKVVVTME HSAKGNAHKI MEKCTLPLTG KQCVNRIITE BACU016703/1-410 MGGAMDLVSS AKTKVVVTME HSAKGNAHKI MEKCTLPLTG KQCVNRIITE ENSTTRP00000004074/1-520 MGGAMDLVSS AKTKVVVTME HSAKGNAHKI MEKCTLPLTG KQCVNRIITE 651 700 bmy_02090T0/1-770 RSA----GAT GTALQTAFRG HLFQGEPRPC PSPSGDDVHG SHSRQVCRRH ENSP00000196371/1-520 KAVFDVDKKK GLTLIELWEG LTV------- -----DDVQK STG------- ENSBTAP00000044368/1-520 KAVFDVDSKK GLTLIELWEG LTV------- -----DDIKK STG------- BACU016703/1-410 KAVFDVDNKK GLTLIELWEG LTV------- -----DDIKK STG------- ENSTTRP00000004074/1-520 KAVFDVDNKK GLTLIELWEG LTV------- -----DDINK STG------- 701 750 bmy_02090T0/1-770 ELYVSFQDLG WLDWVIAPQG YSAYYCEGEC SFPLDSCMNA TNHAILQSLV ENSP00000196371/1-520 ---------- ---------- ---------C DFAVS----- ---------- ENSBTAP00000044368/1-520 ---------- ---------- ---------C DFTVS----- ---------- BACU016703/1-410 ---------- ---------- ---------C DFAVS----- ---------- ENSTTRP00000004074/1-520 ---------- ---------- ---------C DFAVS----- ---------- 751 800 bmy_02090T0/1-770 HLMKPDAVPK ACCAPTKLSA TSVLYYDSSN NVILRKHRNM VVRACGCH ENSP00000196371/1-520 ----PKLMPM QQIAN----- ---------- ---------- -------- ENSBTAP00000044368/1-520 ----PKLIPM RQIST----- ---------- ---------- -------- BACU016703/1-410 ----PKLIPM QQIAA----- ---------- ---------- -------- ENSTTRP00000004074/1-520 ----PKLIPM QQIAT----- ---------- ---------- --------