KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:55:56 2014 Check: 00 ..
Name: BACU009479/1-410 Len: 570 Check: 285 Weight: 1.00
Name: ENSTTRP00000009106/1-480 Len: 570 Check: 6850 Weight: 1.00
Name: ENSP00000379678/1-567 Len: 570 Check: 3896 Weight: 1.00
Name: bmy_03773T0/1-348 Len: 570 Check: 3485 Weight: 1.00
Name: ENSBTAP00000044376/1-567 Len: 570 Check: 5593 Weight: 1.00
//
1 50
BACU009479/1-410 ----MDPIVL ILVSGWVDHL I--------- ------KWQQ IEPFLLSLSR
ENSTTRP00000009106/1-480 ---------- ---------- ---------- ---------- ----------
ENSP00000379678/1-567 MEGSPIPVLT VPTAPYEDQR PAGGGGLRRP TGLFEGQRNY LPNFIQSVLS
bmy_03773T0/1-348 MEGSPIPVLT VPTAPYEDQR PAGGGGLRRP TGLFEGQRNY LPNFIQSVLS
ENSBTAP00000044376/1-567 MEGSPIPVLT VPTAPYEDQR PAGGGGLRRP TGLFEGQRNY LPNFIQSVLS
51 100
BACU009479/1-410 VLYLK----- ---------- ---------- -------IGR LIIGQNGILS
ENSTTRP00000009106/1-480 ---------- ---------- ---------- -------IGR LIIGQNGILS
ENSP00000379678/1-567 SIDLRDRQGC TMVVGSDGRY FSRTAIEIVV QMAAANGIGR LIIGQNGILS
bmy_03773T0/1-348 SIDLRDRQGC TMVVGSDGRY FSRTATEIVV QMAAANGIGR LIIGQNGILS
ENSBTAP00000044376/1-567 SIDLRDRQGC TMVVGSDGRY FSRTATEIVV QMAAANGIGR LIIGQNGILS
101 150
BACU009479/1-410 TPAVSCIIRK IKAAGGIILT ASHCPGGPGG EFGVKFNVAN GGPAPDVVSD
ENSTTRP00000009106/1-480 TPAVSCIIRK IKAAGGIILT ASHCPGGPGG EFGVKFNVAN GGPAPDVVSD
ENSP00000379678/1-567 TPAVSCIIRK IKAAGGIILT ASHCPGGPGG EFGVKFNVAN GGPAPDVVSD
bmy_03773T0/1-348 TPAVSCIIRK IKAAGGIILT ASHCPGGPGG EFGVKFNVAN GGPAPDVVSD
ENSBTAP00000044376/1-567 TPAVSCIIRK IKAAGGIILT ASHCPGGPGG EFGVKFNVAN GGPAPDVVSD
151 200
BACU009479/1-410 KIYQISKTIE EYAICPDLRI DLSRLGRQEF DLENKFKPFR VEIVDPVDIY
ENSTTRP00000009106/1-480 KIYQISKTIE EYAICPDLRI DLSRLGRQEF DLENKFKPFR VEIVDPVDIY
ENSP00000379678/1-567 KIYQISKTIE EYAICPDLRI DLSRLGRQEF DLENKFKPFR VEIVDPVDIY
bmy_03773T0/1-348 KIYQISKTIE EYAICPDLRI DLSRLGRQEF DLENKFKPFR VEIVDPVDIY
ENSBTAP00000044376/1-567 KIYQISKTIE EYTICPDLRI DLSRLGRQEF DLENKFKPFR VEIVDPVDIY
201 250
BACU009479/1-410 LNLLRTIFDF NAIKSLLTGP SQLKIRIDAM HGVMGPYVRK VLCDELGAPA
ENSTTRP00000009106/1-480 LNLLRTIFDF NAIKSLLTGP SQLKIRIDAM HGVMGPYVRK VLCDELGAPA
ENSP00000379678/1-567 LNLLRTIFDF HAIKGLLTGP SQLKIRIDAM HGVMGPYVRK VLCDELGAPA
bmy_03773T0/1-348 LNLLRTIFDF NAIKSLLTGP SQLKIRIDAM HGVMGPYVRK VLCDELGAPA
ENSBTAP00000044376/1-567 LNLLRTIFDF NAIKSLLTGP GQLKIRVDAM HGVMGPYVRK VLCDELGAPA
251 300
BACU009479/1-410 NSAINCVPLE DFGGQHPDPN LTYATTLLEA MKGGEYGFGA AFDADGDRYM
ENSTTRP00000009106/1-480 NSAINCVPLE DFGGQHPDPN LTYATTLLEA MKGGEYGFGA AFDADGDRYM
ENSP00000379678/1-567 NSAINCVPLE DFGGQHPDPN LTYATTLLEA MKGGEYGFGA AFDADGDRYM
bmy_03773T0/1-348 NSAINCVPLE DFGGQHPDPN LTYATTLLEA MKGGEYGFGA AFDADGDRYM
ENSBTAP00000044376/1-567 NSAINCVPLE DFGGQHPDPN LTYATTLLEA MKGGEYGFGA AFDADGDRYM
301 350
BACU009479/1-410 ILGQNGFFVS PSDSLAIIAA NLSCIPYFRQ MGVRGFGRSM PTSTALDR--
ENSTTRP00000009106/1-480 ILGQNGFFVS PSDSLAIIAA NXXXXXXXXX XXXXXXXXXX XXXXXXXXVA
ENSP00000379678/1-567 ILGQNGFFVS PSDSLAIIAA NLSCIPYFRQ MGVRGFGRSM PTSMALDRVA
bmy_03773T0/1-348 ILGQNGFFVS PSDSLAIIAA NLSCIPYFRQ MGVRGFGRSM PTSTALDR--
ENSBTAP00000044376/1-567 ILGQNGFFVS PSDSLAIIAA NLSCIPYFRQ MGVRGFGRSM PTSTALDRVA
351 400
BACU009479/1-410 SSYLCLAYEK QAG------V LIPVSPEPGS HLVFRLQANN L---SGVW--
ENSTTRP00000009106/1-480 KSMKVPVYET PAGWRFFSNL MDSGRCSLCG EESFGTGSDH LREKDGLWAV
ENSP00000379678/1-567 KSMKVPVYET PAGWRFFSNL MDSGRCNLCG EESFGTGSDH LREKDGLWAV
bmy_03773T0/1-348 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000044376/1-567 KSMKVPVYET PAGWRFFSNL MDSGRCSLCG EESFGTGSDH LREKDGLWAV
401 450
BACU009479/1-410 ---------- -KYRSGVCDS AWNQ------ ---DFQ---- ----------
ENSTTRP00000009106/1-480 LVWLSIIAAR KQSVEEIVRD HWAKFGRHYY CRFDYEALEP KTTYYIMRDL
ENSP00000379678/1-567 LVWLSIIAAR KQSVEEIVRD HWAKFGRHYY CRFDYEGLDP KTTYYIMRDL
bmy_03773T0/1-348 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000044376/1-567 LVWLSIIAAR KQSVEEIVRD HWAKFGRHYY CRFDYEGLEP KTTYYIMRDL
451 500
BACU009479/1-410 ECLLEETLLC ASHF------ ---------- ---------- ----------
ENSTTRP00000009106/1-480 EALVTDKSFI GQQFAVGSHV YSVAKTDSFE YVDPVYGTVT KKQGLRIIFS
ENSP00000379678/1-567 EALVTDKSFI GQQFAVGSHV YSVAKTDSFE YVDPVDGTVT KKQGLRIIFS
bmy_03773T0/1-348 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000044376/1-567 EALLTDKSFI GQQFAVGSHV YSVAKTDSFE YVDPVDGTVT KKQGLRIIFS
501 550
BACU009479/1-410 ----LMLALN VNS------- ---------- ---KQLPETQ F--LLEVAVS
ENSTTRP00000009106/1-480 DASRLIFRLS SSSGVRATIR LYAESYERDP SGHDQEPQAV LSPLIAIALK
ENSP00000379678/1-567 DASRLIFRLS SSSGVRATLR LYAESYERDP SGHDQEPQAV LSPLIAIALK
bmy_03773T0/1-348 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000044376/1-567 DASRLIFRLS SSSGVRATIR LYAESYERDP SGHDQEPQAV LSPLIAIALK
551 600
BACU009479/1-410 VFHILQPYMH RNPMQLVEFL
ENSTTRP00000009106/1-480 ISQIHERTGR RGPTVIT---
ENSP00000379678/1-567 ISQIHERTGR RGPTVIT---
bmy_03773T0/1-348 ---------- ----------
ENSBTAP00000044376/1-567 ISQIHERTGR RGPTVIT---